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Conserved domains on  [gi|3873639|emb|CAA88085|]
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Serpentine receptor class alpha-8 [Caenorhabditis elegans]

Protein Classification

class alpha serpentine receptor( domain architecture ID 10489313)

class alpha serpentine receptor (Sra) belongs to a family of seven-transmembrane (7TM) G protein-coupled receptors involved in chemoreception, a central sense of soil nematodes like Caenorhabditis elegans

CATH:  1.20.1070.10
Gene Ontology:  GO:0004888|GO:0007606

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7TM_GPCR_Sra pfam02117
Serpentine type 7TM GPCR chemoreceptor Sra; Chemoreception is mediated in Caenorhabditis ...
1-328 1.23e-166

Serpentine type 7TM GPCR chemoreceptor Sra; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sra is part of the Sra superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


:

Pssm-ID: 111054  Cd Length: 328  Bit Score: 466.82  E-value: 1.23e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639      1 MENLTCASSVEQDRFASLNFIISQSVDLITSFFTYMLSIIAIKMVLKQSIFETSTKILLFLNIFYANLYQIVYSIDVVVI 80
Cdd:pfam02117   1 MSNPKCASEDEIDRLSSLNFRIAQFIDLIAIIITFILTYFAIKIVFKKSIFQLSTKILLFQNLFYANLHQIFYGIEAIRM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639     81 LYKHFFMQEEVCSLLILESSCAPFLETLIGTSSGMMYCQTGLLIERFCATFLKTYNGKKTIFVGSFIAIVVMISTTSTGK 160
Cdd:pfam02117  81 LYKSFFMLSEPCNILITEIDCAPYLEVLVAGISGMIYGQTGLLIERACATFIKKYKKKKSALPGVIISILVLICSIATGK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639    161 LVIWDDPLDDAVLACFIFPKKSKARSTIHFYISTVVSLFNLAASVALNKYNKTLEYQVRFKICARFHKRQVIESTETICF 240
Cdd:pfam02117 161 IIIWDDPLDGYVLACFIFPSKSVPRSNTFLSICTVLSLFNLVISVLILYYNKKLEYSTRFKVGARFQKREVIDSTSTICF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639    241 LNFTQFVFMFIYSSGNSTLKSIRDYIQPETYNFWVVWCYTVPFIALTFPLLLIYKVKSTRGIRAQKIVQISNTKQTQDEH 320
Cdd:pfam02117 241 LTFSQFIFMFIYSFGVLTLRSIRENISPEQYYLWVVWLYTVPFIALSFPLLLIYRIRSTRSNRTRKIKEITSTKQTQEEH 320

                  ....*...
gi 3873639    321 INQMKVMW 328
Cdd:pfam02117 321 IKQMKNMW 328
 
Name Accession Description Interval E-value
7TM_GPCR_Sra pfam02117
Serpentine type 7TM GPCR chemoreceptor Sra; Chemoreception is mediated in Caenorhabditis ...
1-328 1.23e-166

Serpentine type 7TM GPCR chemoreceptor Sra; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sra is part of the Sra superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 111054  Cd Length: 328  Bit Score: 466.82  E-value: 1.23e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639      1 MENLTCASSVEQDRFASLNFIISQSVDLITSFFTYMLSIIAIKMVLKQSIFETSTKILLFLNIFYANLYQIVYSIDVVVI 80
Cdd:pfam02117   1 MSNPKCASEDEIDRLSSLNFRIAQFIDLIAIIITFILTYFAIKIVFKKSIFQLSTKILLFQNLFYANLHQIFYGIEAIRM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639     81 LYKHFFMQEEVCSLLILESSCAPFLETLIGTSSGMMYCQTGLLIERFCATFLKTYNGKKTIFVGSFIAIVVMISTTSTGK 160
Cdd:pfam02117  81 LYKSFFMLSEPCNILITEIDCAPYLEVLVAGISGMIYGQTGLLIERACATFIKKYKKKKSALPGVIISILVLICSIATGK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639    161 LVIWDDPLDDAVLACFIFPKKSKARSTIHFYISTVVSLFNLAASVALNKYNKTLEYQVRFKICARFHKRQVIESTETICF 240
Cdd:pfam02117 161 IIIWDDPLDGYVLACFIFPSKSVPRSNTFLSICTVLSLFNLVISVLILYYNKKLEYSTRFKVGARFQKREVIDSTSTICF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639    241 LNFTQFVFMFIYSSGNSTLKSIRDYIQPETYNFWVVWCYTVPFIALTFPLLLIYKVKSTRGIRAQKIVQISNTKQTQDEH 320
Cdd:pfam02117 241 LTFSQFIFMFIYSFGVLTLRSIRENISPEQYYLWVVWLYTVPFIALSFPLLLIYRIRSTRSNRTRKIKEITSTKQTQEEH 320

                  ....*...
gi 3873639    321 INQMKVMW 328
Cdd:pfam02117 321 IKQMKNMW 328
 
Name Accession Description Interval E-value
7TM_GPCR_Sra pfam02117
Serpentine type 7TM GPCR chemoreceptor Sra; Chemoreception is mediated in Caenorhabditis ...
1-328 1.23e-166

Serpentine type 7TM GPCR chemoreceptor Sra; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Sra is part of the Sra superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 111054  Cd Length: 328  Bit Score: 466.82  E-value: 1.23e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639      1 MENLTCASSVEQDRFASLNFIISQSVDLITSFFTYMLSIIAIKMVLKQSIFETSTKILLFLNIFYANLYQIVYSIDVVVI 80
Cdd:pfam02117   1 MSNPKCASEDEIDRLSSLNFRIAQFIDLIAIIITFILTYFAIKIVFKKSIFQLSTKILLFQNLFYANLHQIFYGIEAIRM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639     81 LYKHFFMQEEVCSLLILESSCAPFLETLIGTSSGMMYCQTGLLIERFCATFLKTYNGKKTIFVGSFIAIVVMISTTSTGK 160
Cdd:pfam02117  81 LYKSFFMLSEPCNILITEIDCAPYLEVLVAGISGMIYGQTGLLIERACATFIKKYKKKKSALPGVIISILVLICSIATGK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639    161 LVIWDDPLDDAVLACFIFPKKSKARSTIHFYISTVVSLFNLAASVALNKYNKTLEYQVRFKICARFHKRQVIESTETICF 240
Cdd:pfam02117 161 IIIWDDPLDGYVLACFIFPSKSVPRSNTFLSICTVLSLFNLVISVLILYYNKKLEYSTRFKVGARFQKREVIDSTSTICF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3873639    241 LNFTQFVFMFIYSSGNSTLKSIRDYIQPETYNFWVVWCYTVPFIALTFPLLLIYKVKSTRGIRAQKIVQISNTKQTQDEH 320
Cdd:pfam02117 241 LTFSQFIFMFIYSFGVLTLRSIRENISPEQYYLWVVWLYTVPFIALSFPLLLIYRIRSTRSNRTRKIKEITSTKQTQEEH 320

                  ....*...
gi 3873639    321 INQMKVMW 328
Cdd:pfam02117 321 IKQMKNMW 328
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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