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Conserved domains on  [gi|1204163|emb|CAA93541|]
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F-box protein Pof14 [Schizosaccharomyces pombe]

Protein Classification

F-box protein( domain architecture ID 10585883)

F-box protein functions as the substrate-recognition component of an SCF (Skp1-cullin-F-box) E3 ubiquitin ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
F-box-like_2 pfam13013
F-box-like domain; The F-box domain has a role in mediating protein-protein interactions in a ...
 149-251 2.95e-40

F-box-like domain; The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 404037  Cd Length: 107  Bit Score: 139.20  E-value: 2.95e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1204163    149 ASPKSN-LYYRYSSESPKYAKILDCPDEILQLIFSYCYDASYIE-KLPFAFSYRKQRHTLIHDL--PNTCLRFKKILSPR 224
Cdd:pfam13013   1 ASPKTCvLWYLLPKPEPRYQLILDLPDELLRLIFKYCKDPEYTPlMPQFRFYYRRARHLIWFLLpkPQTCRALRKLFSPR 80

                          90       100
                  ....*....|....*....|....*..
gi 1204163    225 NVSFWKRLLKVHKKNPNSAVTCSESIN 251
Cdd:pfam13013  81 NVSLWIDVLRVHDIPEDCRKFIPSFAE 107
 
Name Accession Description Interval E-value
F-box-like_2 pfam13013
F-box-like domain; The F-box domain has a role in mediating protein-protein interactions in a ...
 149-251 2.95e-40

F-box-like domain; The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 404037  Cd Length: 107  Bit Score: 139.20  E-value: 2.95e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1204163    149 ASPKSN-LYYRYSSESPKYAKILDCPDEILQLIFSYCYDASYIE-KLPFAFSYRKQRHTLIHDL--PNTCLRFKKILSPR 224
Cdd:pfam13013   1 ASPKTCvLWYLLPKPEPRYQLILDLPDELLRLIFKYCKDPEYTPlMPQFRFYYRRARHLIWFLLpkPQTCRALRKLFSPR 80

                          90       100
                  ....*....|....*....|....*..
gi 1204163    225 NVSFWKRLLKVHKKNPNSAVTCSESIN 251
Cdd:pfam13013  81 NVSLWIDVLRVHDIPEDCRKFIPSFAE 107
 
Name Accession Description Interval E-value
F-box-like_2 pfam13013
F-box-like domain; The F-box domain has a role in mediating protein-protein interactions in a ...
 149-251 2.95e-40

F-box-like domain; The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 404037  Cd Length: 107  Bit Score: 139.20  E-value: 2.95e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1204163    149 ASPKSN-LYYRYSSESPKYAKILDCPDEILQLIFSYCYDASYIE-KLPFAFSYRKQRHTLIHDL--PNTCLRFKKILSPR 224
Cdd:pfam13013   1 ASPKTCvLWYLLPKPEPRYQLILDLPDELLRLIFKYCKDPEYTPlMPQFRFYYRRARHLIWFLLpkPQTCRALRKLFSPR 80

                          90       100
                  ....*....|....*....|....*..
gi 1204163    225 NVSFWKRLLKVHKKNPNSAVTCSESIN 251
Cdd:pfam13013  81 NVSLWIDVLRVHDIPEDCRKFIPSFAE 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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