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Conserved domains on  [gi|1849058306|emb|CAB4586722|]
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unannotated protein [freshwater metagenome]

Protein Classification

YggT family protein( domain architecture ID 10002377)

YggT family protein similar to integral membrane protein YlmG that might be related to chloroplast and cyanobacterial division processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-94 2.07e-05

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 38.95  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849058306  1 MSIKGIVLQLLTLFEVALFIRLVIDYIRIFARNWrpnslvmaLFEVIYSVTEPAMSFVRRFIPPlrIGGvaLDLSFIVLI 80
Cdd:COG0762    2 LALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNP--------IGRFLYQLTEPLLRPIRRIIPP--LGG--IDLSPIVAI 69

                         90
                 ....*....|....
gi 1849058306 81 FAINTLQKLIGVLL 94
Cdd:COG0762   70 LILQLLQRLLLGLL 83
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-94 2.07e-05

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 38.95  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849058306  1 MSIKGIVLQLLTLFEVALFIRLVIDYIRIFARNWrpnslvmaLFEVIYSVTEPAMSFVRRFIPPlrIGGvaLDLSFIVLI 80
Cdd:COG0762    2 LALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNP--------IGRFLYQLTEPLLRPIRRIIPP--LGG--IDLSPIVAI 69

                         90
                 ....*....|....
gi 1849058306 81 FAINTLQKLIGVLL 94
Cdd:COG0762   70 LILQLLQRLLLGLL 83
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 10-89 7.46e-05

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 37.47  E-value: 7.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849058306 10 LLTLFEVALFIRLVIDYIRifarnwrPNSLVMALFEVIYSVTEPAMSFVRRFIPPlrigGVALDLSFIVLIFAINTLQKL 89
Cdd:pfam02325  3 LLSLYILLLIIRALLSWVP-------PNPFVNPIAQFLYRLTEPLLRPLRRIIPP----PGGLDLSPLVALLLLQLLRIL 71
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-94 2.07e-05

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 38.95  E-value: 2.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849058306  1 MSIKGIVLQLLTLFEVALFIRLVIDYIRIFARNWrpnslvmaLFEVIYSVTEPAMSFVRRFIPPlrIGGvaLDLSFIVLI 80
Cdd:COG0762    2 LALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNP--------IGRFLYQLTEPLLRPIRRIIPP--LGG--IDLSPIVAI 69

                         90
                 ....*....|....
gi 1849058306 81 FAINTLQKLIGVLL 94
Cdd:COG0762   70 LILQLLQRLLLGLL 83
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 10-89 7.46e-05

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 37.47  E-value: 7.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849058306 10 LLTLFEVALFIRLVIDYIRifarnwrPNSLVMALFEVIYSVTEPAMSFVRRFIPPlrigGVALDLSFIVLIFAINTLQKL 89
Cdd:pfam02325  3 LLSLYILLLIIRALLSWVP-------PNPFVNPIAQFLYRLTEPLLRPLRRIIPP----PGGLDLSPLVALLLLQLLRIL 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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