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Conserved domains on  [gi|1849264159|emb|CAB4883324|]
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unannotated protein [freshwater metagenome]

Protein Classification

phytoene desaturase family protein( domain architecture ID 1001200)

phytoene desaturase family protein from the CrtI family, whose members catalyze multiple desaturation reactions on phytoene, generating a large diversity of molecules that can then be cyclized and produce many different carotenoids

Gene Ontology:  GO:0016491|GO:0016117

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
crtI_fam super family cl37159
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 12-492 0e+00

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


The actual alignment was detected with superfamily member TIGR02734:

Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 542.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPSLIQDAFSAVGEDMKDWLELMPV 91
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  92 SPLYRAFYADGSQIDVHADTKAMEQEIrEKVSATEAAGYRNYVDFVTKLYKYEMNDFIDRNIDSPLNLLTPNLARLIALG 171
Cdd:TIGR02734  81 DPFYRLCWEDGSQLDVDNDQEELEAQI-ARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADAPQLLALL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 172 GFRHLQPKVNQFLKDPRLQKVYSFQAMYAGVSPQQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAAAQKHGVKFIYN 251
Cdd:TIGR02734 160 AWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 252 SSVTSLEKSGSRVTAAITDKGERFECDAIVMNPDLPVVWKDLLGKEPL------SIKRLKYSPSCVTL---LVGSSKHYD 322
Cdd:TIGR02734 240 AEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRrrypaaRLSRKRPSPSLFVLyfgLLGVDGHWP 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 323 HIAHHNIHFGESWDGVFDELIKKKILMTDPSVLVTVPSHDDKSLAPAGKESYYVLFPTPNL-SADIDWTKEKSRYRDEMI 401
Cdd:TIGR02734 320 QLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCESLYVLAPVPHLgTADVDWSVEGPRYRDRIL 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 402 RVLEARGYHGFGDAIETEHMTTPLDWQA-QGMEQGAPFASAHTFFQTGPFRPRNIAAGFDNVVFAGSGTQPGVGVPMVLI 480
Cdd:TIGR02734 400 AYLEERAIPGLRDRIVVERTFTPADFRDrYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLG 479

                         490
                  ....*....|..
gi 1849264159 481 SGRLAAERIVGP 492
Cdd:TIGR02734 480 SAKATAKLMLGD 491
 
Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 12-492 0e+00

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 542.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPSLIQDAFSAVGEDMKDWLELMPV 91
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  92 SPLYRAFYADGSQIDVHADTKAMEQEIrEKVSATEAAGYRNYVDFVTKLYKYEMNDFIDRNIDSPLNLLTPNLARLIALG 171
Cdd:TIGR02734  81 DPFYRLCWEDGSQLDVDNDQEELEAQI-ARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADAPQLLALL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 172 GFRHLQPKVNQFLKDPRLQKVYSFQAMYAGVSPQQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAAAQKHGVKFIYN 251
Cdd:TIGR02734 160 AWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 252 SSVTSLEKSGSRVTAAITDKGERFECDAIVMNPDLPVVWKDLLGKEPL------SIKRLKYSPSCVTL---LVGSSKHYD 322
Cdd:TIGR02734 240 AEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRrrypaaRLSRKRPSPSLFVLyfgLLGVDGHWP 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 323 HIAHHNIHFGESWDGVFDELIKKKILMTDPSVLVTVPSHDDKSLAPAGKESYYVLFPTPNL-SADIDWTKEKSRYRDEMI 401
Cdd:TIGR02734 320 QLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCESLYVLAPVPHLgTADVDWSVEGPRYRDRIL 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 402 RVLEARGYHGFGDAIETEHMTTPLDWQA-QGMEQGAPFASAHTFFQTGPFRPRNIAAGFDNVVFAGSGTQPGVGVPMVLI 480
Cdd:TIGR02734 400 AYLEERAIPGLRDRIVVERTFTPADFRDrYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLG 479

                         490
                  ....*....|..
gi 1849264159 481 SGRLAAERIVGP 492
Cdd:TIGR02734 480 SAKATAKLMLGD 491
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 9-494 3.57e-167

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 480.89  E-value: 3.57e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPSLIQDAFSAVGEDmkDWLEL 88
Cdd:COG1233     3 MYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERPGFRFDVGPSVLTMPGVLERLFRELGLE--DYLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  89 MPVSPLYRAFYADGSQIDVHADTKAMEQEIrEKVSATEAAGYRNYVDFVTKLYKYEMNDFIDRNIDSPLNLLTPNLARLI 168
Cdd:COG1233    81 VPLDPAYRVPFPDGRALDLPRDLERTAAEL-ERLFPGDAEAYRRFLAELRRLYDALLEDLLYRPLLSLRDLLRPLALARL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 169 ALGGFRHLQPKVNQFLKDPRLQKVYSFQAMYAGVSPQQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAAAQKHGVKF 248
Cdd:COG1233   160 LRLLLRSLRDLLRRYFKDPRLRALLAGQALYLGLSPDRTPALYALIAYLEYAGGVWYPKGGMGALADALARLAEELGGEI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 249 IYNSSVTSLEKSGSRVTAAITDKGERFECDAIVMNPDLPVVWKDLLGKEPLS------IKRLKYSPSCVTLLVGSSKHYD 322
Cdd:COG1233   240 RTGAEVERILVEGGRATGVRLADGEEIRADAVVSNADPAHTYLRLLGEEALParyrrrLERFRYSPSAFKLYLGLDGPLP 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 323 HIAHHNIHFGESWDGVFDElIKKKILMTDPSVLVTVPSHDDKSLAPAGKESYYVLFPTPNLSADiDWTKEKSRYRDEMIR 402
Cdd:COG1233   320 GLAHHTIHLSEDYEAAFDD-IFRGRLPEDPSLYVSIPSLTDPSLAPEGKHTLWVLVPVPYGLED-AWDELKEEYAERILA 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 403 VLEARgYHGFGDAIETEHMTTPLDWQAQ-GMEQGAPFASAHTFFQTGPFRPRNIAAGFDNVVFAGSGTQPGVGVPMVLIS 481
Cdd:COG1233   398 RLERY-APGLRDRIVAREVLTPLDFERYlNLVGGAIYGGAHTLDQSAFFRPSNYRTPIPGLYLVGASTHPGGGVPGVLIS 476

                         490
                  ....*....|...
gi 1849264159 482 GRLAAERIVGPVK 494
Cdd:COG1233   477 GRLAARRILKDLK 489
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 19-489 2.51e-39

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 148.02  E-value: 2.51e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  19 LAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLT-----MPSLIQDAfsavgeDMKDWLELMPVSP 93
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHgaqppLLALLKEL------GLEDRLVLPDPAP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  94 LYRAFYADGSQidVHADTKAMEQEIREkvsateAAGYRNYVDFVTKLyKYEMNDFIDRNIDSPLNLLTPNLARLIALGGF 173
Cdd:pfam01593  75 FYTVLFAGGRR--YPGDFRRVPAGWEG------LLEFGRLLSIPEKL-RLGLAALASDALDEFDLDDFSLAESLLFLGRR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 174 RHLQPKVNQFLKDPRLQKVYSF-QAMYAGVSP--QQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAaaQKHGVKFIY 250
Cdd:pfam01593 146 GPGDVEVWDRLIDPELFAALPFaSGAFAGDPSelSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAA--QLLGGDVRL 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 251 NSSVTSLEKSGSRVTAAITDkGERFECDAIVMNPDLPVVwKDLLGKEPLS------IKRLKYSPSCvtllvgsskhydhi 324
Cdd:pfam01593 224 NTRVRSIDREGDGVTVTLTD-GEVIEADAVIVTVPLGVL-KRILFTPPLPpekaraIRNLGYGPVN-------------- 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 325 ahhNIHFgeSWDGVFDELIKKKILMTD-PSVLVT-VPSHDDKSLAPAGKESYYVLFptpnLSADiDWTKEKSRYRDEMI- 401
Cdd:pfam01593 288 ---KVHL--EFDRKFWPDLGLLGLLSElLTGLGTaFSWLTFPNRAPPGKGLLLLVY----VGPG-DRARELEGLSDEELl 357

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 402 -RVLEA-RGYhgFGDAIETEHMTTPLDWQAQGMEQGApFASAHTFFQTGPFRPRNiAAGFDNVVFAGSGTQPGV--GVPM 477
Cdd:pfam01593 358 qAVLRDlRKL--FGEEAPEPLRVLVSDWHTDPWPRGS-YSLPQYGPGHDDYRPLA-RTPDPGLFFAGEHTSTGYpgTVEG 433

                         490
                  ....*....|..
gi 1849264159 478 VLISGRLAAERI 489
Cdd:pfam01593 434 AIESGRRAARAV 445
PRK07208 PRK07208
hypothetical protein; Provisional
 8-90 6.60e-11

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 64.14  E-value: 6.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPtvltmpsliQDAFSAVGEDMKDWLE 87
Cdd:PRK07208    3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGG---------HRFFSKSPEVMDLWNE 73


                  ...
gi 1849264159  88 LMP 90
Cdd:PRK07208   74 ILP 76
 
Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 12-492 0e+00

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 542.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPSLIQDAFSAVGEDMKDWLELMPV 91
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  92 SPLYRAFYADGSQIDVHADTKAMEQEIrEKVSATEAAGYRNYVDFVTKLYKYEMNDFIDRNIDSPLNLLTPNLARLIALG 171
Cdd:TIGR02734  81 DPFYRLCWEDGSQLDVDNDQEELEAQI-ARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADAPQLLALL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 172 GFRHLQPKVNQFLKDPRLQKVYSFQAMYAGVSPQQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAAAQKHGVKFIYN 251
Cdd:TIGR02734 160 AWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTGALVAAMAKLAEDLGGELRLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 252 SSVTSLEKSGSRVTAAITDKGERFECDAIVMNPDLPVVWKDLLGKEPL------SIKRLKYSPSCVTL---LVGSSKHYD 322
Cdd:TIGR02734 240 AEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRrrypaaRLSRKRPSPSLFVLyfgLLGVDGHWP 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 323 HIAHHNIHFGESWDGVFDELIKKKILMTDPSVLVTVPSHDDKSLAPAGKESYYVLFPTPNL-SADIDWTKEKSRYRDEMI 401
Cdd:TIGR02734 320 QLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCESLYVLAPVPHLgTADVDWSVEGPRYRDRIL 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 402 RVLEARGYHGFGDAIETEHMTTPLDWQA-QGMEQGAPFASAHTFFQTGPFRPRNIAAGFDNVVFAGSGTQPGVGVPMVLI 480
Cdd:TIGR02734 400 AYLEERAIPGLRDRIVVERTFTPADFRDrYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLG 479

                         490
                  ....*....|..
gi 1849264159 481 SGRLAAERIVGP 492
Cdd:TIGR02734 480 SAKATAKLMLGD 491
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 9-494 3.57e-167

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 480.89  E-value: 3.57e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPSLIQDAFSAVGEDmkDWLEL 88
Cdd:COG1233     3 MYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERPGFRFDVGPSVLTMPGVLERLFRELGLE--DYLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  89 MPVSPLYRAFYADGSQIDVHADTKAMEQEIrEKVSATEAAGYRNYVDFVTKLYKYEMNDFIDRNIDSPLNLLTPNLARLI 168
Cdd:COG1233    81 VPLDPAYRVPFPDGRALDLPRDLERTAAEL-ERLFPGDAEAYRRFLAELRRLYDALLEDLLYRPLLSLRDLLRPLALARL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 169 ALGGFRHLQPKVNQFLKDPRLQKVYSFQAMYAGVSPQQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAAAQKHGVKF 248
Cdd:COG1233   160 LRLLLRSLRDLLRRYFKDPRLRALLAGQALYLGLSPDRTPALYALIAYLEYAGGVWYPKGGMGALADALARLAEELGGEI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 249 IYNSSVTSLEKSGSRVTAAITDKGERFECDAIVMNPDLPVVWKDLLGKEPLS------IKRLKYSPSCVTLLVGSSKHYD 322
Cdd:COG1233   240 RTGAEVERILVEGGRATGVRLADGEEIRADAVVSNADPAHTYLRLLGEEALParyrrrLERFRYSPSAFKLYLGLDGPLP 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 323 HIAHHNIHFGESWDGVFDElIKKKILMTDPSVLVTVPSHDDKSLAPAGKESYYVLFPTPNLSADiDWTKEKSRYRDEMIR 402
Cdd:COG1233   320 GLAHHTIHLSEDYEAAFDD-IFRGRLPEDPSLYVSIPSLTDPSLAPEGKHTLWVLVPVPYGLED-AWDELKEEYAERILA 397

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 403 VLEARgYHGFGDAIETEHMTTPLDWQAQ-GMEQGAPFASAHTFFQTGPFRPRNIAAGFDNVVFAGSGTQPGVGVPMVLIS 481
Cdd:COG1233   398 RLERY-APGLRDRIVAREVLTPLDFERYlNLVGGAIYGGAHTLDQSAFFRPSNYRTPIPGLYLVGASTHPGGGVPGVLIS 476

                         490
                  ....*....|...
gi 1849264159 482 GRLAAERIVGPVK 494
Cdd:COG1233   477 GRLAARRILKDLK 489
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 19-489 2.51e-39

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 148.02  E-value: 2.51e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  19 LAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLT-----MPSLIQDAfsavgeDMKDWLELMPVSP 93
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHgaqppLLALLKEL------GLEDRLVLPDPAP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  94 LYRAFYADGSQidVHADTKAMEQEIREkvsateAAGYRNYVDFVTKLyKYEMNDFIDRNIDSPLNLLTPNLARLIALGGF 173
Cdd:pfam01593  75 FYTVLFAGGRR--YPGDFRRVPAGWEG------LLEFGRLLSIPEKL-RLGLAALASDALDEFDLDDFSLAESLLFLGRR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 174 RHLQPKVNQFLKDPRLQKVYSF-QAMYAGVSP--QQALAIYAVIAYMDSVNGVFFPKGGMHAVPRALAAaaQKHGVKFIY 250
Cdd:pfam01593 146 GPGDVEVWDRLIDPELFAALPFaSGAFAGDPSelSAGLALPLLWALLGEGGSLLLPRGGLGALPDALAA--QLLGGDVRL 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 251 NSSVTSLEKSGSRVTAAITDkGERFECDAIVMNPDLPVVwKDLLGKEPLS------IKRLKYSPSCvtllvgsskhydhi 324
Cdd:pfam01593 224 NTRVRSIDREGDGVTVTLTD-GEVIEADAVIVTVPLGVL-KRILFTPPLPpekaraIRNLGYGPVN-------------- 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 325 ahhNIHFgeSWDGVFDELIKKKILMTD-PSVLVT-VPSHDDKSLAPAGKESYYVLFptpnLSADiDWTKEKSRYRDEMI- 401
Cdd:pfam01593 288 ---KVHL--EFDRKFWPDLGLLGLLSElLTGLGTaFSWLTFPNRAPPGKGLLLLVY----VGPG-DRARELEGLSDEELl 357

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 402 -RVLEA-RGYhgFGDAIETEHMTTPLDWQAQGMEQGApFASAHTFFQTGPFRPRNiAAGFDNVVFAGSGTQPGV--GVPM 477
Cdd:pfam01593 358 qAVLRDlRKL--FGEEAPEPLRVLVSDWHTDPWPRGS-YSLPQYGPGHDDYRPLA-RTPDPGLFFAGEHTSTGYpgTVEG 433

                         490
                  ....*....|..
gi 1849264159 478 VLISGRLAAERI 489
Cdd:pfam01593 434 AIESGRRAARAV 445
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 9-491 4.18e-20

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 92.59  E-value: 4.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPtvltmpsliqDAFSAVGEDMKDWL-- 86
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEVDGFRIDRGP----------HSFLTRDPEVLELLre 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  87 -----ELMPVSPLYRAFYADGsqidvhadtkameqeirekvsateaagyrnyvdfvtKLYKYEMN--DFIDRNIDSP--- 156
Cdd:COG1232    71 lglgdELVWPNTRKSYIYYGG------------------------------------KLHPLPQGplALLRSPLLSLagk 114

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 157 ----LNLLTPNLARL--IALGGF--RHLQPKVNQFLKDPRLQKVYS-----------FQAMYAgVSPQQALAIYAVIAYM 217
Cdd:COG1232   115 lralLELLAPRRPPGedESLAEFvrRRFGREVYERLVEPLLEGVYAgdpdelsadwaFPRLKR-LELEHGSLIKGALALR 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 218 --DSVNGVFF-PKGGMHAVPRALAAAAQKhgVKFIYNSSVTSLEKSGSRVTaAITDKGERFECDAIVMNPDLPVVwKDLL 294
Cdd:COG1232   194 kgAKAGEVFGyLRGGLGTLVEALAEALEA--GEIRLGTRVTAIEREGGGWR-VTTSDGETIEADAVVSATPAPAL-ARLL 269

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 295 GKEPLSI----KRLKYSPS-CVTLLVGSskhyDHIAHHNiHFGesWdgvfdelikkkILMTDPSVL---VTVPSHddKS- 365
Cdd:COG1232   270 APLPPEVaaalAGIPYASVaVVALGFDR----PDLPPPD-GFG--W-----------LVPRDEGVPilaVTFSSN--KWp 329

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 366 -LAPAGKESYYVLFPTPNLSADIDWTKE--KSRYRDEMIRVLEARGyhgfgdaietehmtTPLDWQAQGMEQGAPfasah 442
Cdd:COG1232   330 hRAPDGKVLLRLEVGGAGDPELWQLSDEelVALALADLRKLLGIDA--------------EPVDTRVVRWPKAYP----- 390

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1849264159 443 tffQTGPFRPRNIA------AGFDNVVFAGSGTQpGVGVPMVLISGRLAAERIVG 491
Cdd:COG1232   391 ---QYTVGHLERVAairealAALPGLYLAGRAYD-GVGLPDCIRSGREAAERILA 441
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
1-309 1.60e-15

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 78.42  E-value: 1.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   1 MVKRIKGPSqkVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRN--GLLNKDGYAFDTGPTVltmpsliqdafsaV 78
Cdd:COG1231     1 MSRRARGKD--VVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRVwtLRFGDDGLYAELGAMR-------------I 65

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  79 GEDMKDWLEL-----MPVSPLYRA-----FYADG---SQIDVHADTKAMEqEIREKVSATEAAGYRNYVDFVTKLYKYEM 145
Cdd:COG1231    66 PPSHTNLLALarelgLPLEPFPNEngnalLYLGGkrvRAGEIAADLRGVA-ELLAKLLRALAAALDPWAHPAAELDRESL 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 146 NDFIDRNIDSplnlltPNLARLIALGGFrhlqpkvNQFLKDPrlqkvysfqamyagvSPQQALAIYAVIAYMDSVNGVFF 225
Cdd:COG1231   145 AEWLRRNGAS------PSARRLLGLLGA-------GEYGADP---------------DELSLLDLLRYAASAGGGAQQFR 196

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 226 PKGGMHAVPRalaAAAQKHGVKFIYNSSVTSLEKSGSRVTaAITDKGERFECDAIVM------------NPDLPVVWKDL 293
Cdd:COG1231   197 IVGGMDQLPR---ALAAELGDRIRLGAPVTRIRQDGDGVT-VTTDDGGTVRADAVIVtvppsvlrriefDPPLPAAKRAA 272

                         330
                  ....*....|....*.
gi 1849264159 294 lgkeplsIKRLKYSPS 309
Cdd:COG1231   273 -------IQRLPYGAA 281
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
11-282 2.69e-15

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 77.25  E-value: 2.69e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG---RN-GLLNkdgyafdTGPTVLTMPSLIQDAFSAVgEDMKDWL 86
Cdd:COG0665     4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGasgRNaGQLR-------PGLAALADRALVRLAREAL-DLWRELA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  87 ELMPVSPLYRAfyaDGSqidVH-ADTKAMEQEIREKVSATEAAGYRnyvdfvtklykYEMndfidrnidsplnlltpnla 165
Cdd:COG0665    76 AELGIDCDFRR---TGV---LYlARTEAELAALRAEAEALRALGLP-----------VEL-------------------- 118

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 166 rlialggfrhlqpkvnqflkdprlqkvysfqamyagVSPQQALAIYAVIAYMDSVNGVFFPKGGmHAVPRAL----AAAA 241
Cdd:COG0665   119 ------------------------------------LDAAELREREPGLGSPDYAGGLYDPDDG-HVDPAKLvralARAA 161

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1849264159 242 QKHGVKFIYNSSVTSLEKSGSRVTAAITDKGeRFECDAIVM 282
Cdd:COG0665   162 RAAGVRIREGTPVTGLEREGGRVTGVRTERG-TVRADAVVL 201
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 8-282 9.43e-14

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 72.96  E-value: 9.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNG--LLNKDGYAFDTGPTVLtmPSLIQDAFsavgedmkDW 85
Cdd:COG3349     2 MPPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARsfPDPDTGLPIDNGQHVL--LGCYRNTL--------DL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  86 LELMPVSPLYRAfyadgsqidvhadtkameqeiREKVSATEAAGyrnyvdfvtklykyEMNDFIDRNIDSPLNLLTPN-- 163
Cdd:COG3349    72 LRRIGAADNLVG---------------------PEPLQFPLPGG--------------RRWTLRAPRLPAPLHLLRALlr 116

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 164 -----------LARLIALGGFRHLQPK----VNQFLKD----PRLQKvYSFQAM-YAGV--SPQQALAIYAVIAYMDSVN 221
Cdd:COG3349   117 apglsladrlaLLRLLTACRERRWRELddisVADWLRRhgqsPRLIR-RLWEPLlLAALntPPEQASARLALTVLRETLL 195

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1849264159 222 G------VFFPKGGMHAV-PRALAAAAQKHGVKFIYNSSVTSLEKSGSRVTAAITDKGERFECDAIVM 282
Cdd:COG3349   196 AgpaasdLLVPRGPLSELfVDPALAYLEARGGEVRLGTRVRALEFDGGRVTGLVLADGETVPADAVVL 263
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
14-69 4.26e-11

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 58.31  E-value: 4.26e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1849264159  14 VVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPS 69
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIFHGSD 56
PRK07208 PRK07208
hypothetical protein; Provisional
 8-90 6.60e-11

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 64.14  E-value: 6.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPtvltmpsliQDAFSAVGEDMKDWLE 87
Cdd:PRK07208    3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGG---------HRFFSKSPEVMDLWNE 73


                  ...
gi 1849264159  88 LMP 90
Cdd:PRK07208   74 ILP 76
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
9-53 2.68e-10

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 62.57  E-value: 2.68e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNK 53
Cdd:COG1148   140 NKRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRAAQLHK 184
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
8-87 2.71e-10

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 61.82  E-value: 2.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVLTMPSliqDAFSAVgedMKDWLE 87
Cdd:COG3380     2 SMPDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGGRMATRRLDGGRFDHGAQYFTARD---PRFQAL---VEEWLA 75
PRK07233 PRK07233
hypothetical protein; Provisional
 11-56 1.14e-09

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 60.29  E-value: 1.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGY 56
Cdd:PRK07233    1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGL 46
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 11-49 1.40e-09

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 59.72  E-value: 1.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPG----GRNG 49
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGsgasGRNA 43
SdhA COG1053
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ...
 12-46 6.06e-09

Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440673 [Multi-domain]  Cd Length: 443  Bit Score: 57.92  E-value: 6.06e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:COG1053     6 VVVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGG 40
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 11-47 1.33e-08

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 56.48  E-value: 1.33e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR 47
Cdd:COG0654     5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPD 41
FAD_binding_2 pfam00890
FAD binding domain; This family includes members that bind FAD. This family includes the ...
 12-46 1.93e-08

FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.


Pssm-ID: 395718 [Multi-domain]  Cd Length: 398  Bit Score: 56.14  E-value: 1.93e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:pfam00890   2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGG 36
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 10-46 2.71e-08

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 55.91  E-value: 2.71e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:COG0493   122 KKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 12-46 7.51e-08

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 54.48  E-value: 7.51e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:COG2072     9 VVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG 43
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 1-46 1.62e-07

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 53.64  E-value: 1.62e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1849264159   1 MVKRIKGPS--QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK11749  130 WVLFKRAPKtgKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 10-46 2.14e-07

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 53.24  E-value: 2.14e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12810  144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
17-48 2.16e-07

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 52.28  E-value: 2.16e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1849264159  17 AGLAGLSAALRLAGAGRDVTVIERESVPGGRN 48
Cdd:COG0644     1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKI 32
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 8-55 2.24e-07

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 53.31  E-value: 2.24e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVP-----GGRNG----LLNKDG 55
Cdd:PRK01747  259 KARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPaqgasGNRQGalypLLSKDD 315
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 11-82 2.31e-07

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 52.93  E-value: 2.31e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1849264159  11 KVVVVGAGLAGLSAALRL--AGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPtvltmpsliqDAFSAVGEDM 82
Cdd:PRK11883    2 KVAIIGGGITGLSAAYRLhkKGPDADITLLEASDRLGGKIQTVRKDGFPIELGP----------ESFLARKPSA 65
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 11-282 2.41e-07

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 52.32  E-value: 2.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIEREsvpggrngllnkdgyafDTGPTVLTMPSLIQDAFSAVGEDMKDWLELMp 90
Cdd:pfam07992   2 DVVVIGGGPAGLAAALTLAQLGGKVTLIEDE-----------------GTCPYGGCVLSKALLGAAEAPEIASLWADLY- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  91 vsplyrafyadgSQIDVHADTKAMEQEIREKVSATEaagyrnyVDFVTKLYKYEmndfiDRNIDSPLNLLTPNLarLIAL 170
Cdd:pfam07992  64 ------------KRKEEVVKKLNNGIEVLLGTEVVS-------IDPGAKKVVLE-----ELVDGDGETITYDRL--VIAT 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 171 GG--FRHLQPKVNQFLKdpRLQKVY-SFQAMYAGVSPQQA-----------LAIYA--------VIAYMDSVNGVFFPKG 228
Cdd:pfam07992 118 GArpRLPPIPGVELNVG--FLVRTLdSAEALRLKLLPKRVvvvgggyigveLAAALaklgkevtLIEALDRLLRAFDEEI 195

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1849264159 229 GMHAvpralAAAAQKHGVKFIYNSSVTSLEKSGSRVTaAITDKGERFECDAIVM 282
Cdd:pfam07992 196 SAAL-----EKALEKNGVEVRLGTSVKEIIGDGDGVE-VILKDGTEIDADLVVV 243
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
12-42 2.77e-07

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 52.87  E-value: 2.77e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERES 42
Cdd:COG3573     8 VIVVGAGLAGLVAAAELADAGRRVLLLDQEP 38
PLN03000 PLN03000
amine oxidase
 10-112 4.47e-07

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 52.71  E-value: 4.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR----NGLLNKDGYAFDTGPTVLTmpSLIQDAFSAVGEDMKDW 85
Cdd:PLN03000  185 SSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRvytkKMEANRVGAAADLGGSVLT--GTLGNPLGIIARQLGSS 262

                          90       100
                  ....*....|....*....|....*...
gi 1849264159  86 L-ELMPVSPLYRafyADGSQIDVHADTK 112
Cdd:PLN03000  263 LyKVRDKCPLYR---VDGKPVDPDVDLK 287
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 12-306 5.60e-07

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 52.30  E-value: 5.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR--NGLLNKDGY--AFDTGPTVLTmpSLIQDAFSAVGEDMKDWL- 86
Cdd:PLN02328  241 VVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRvkTMKMKGDGVvaAADLGGSVLT--GINGNPLGVLARQLGLPLh 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  87 ELMPVSPLYRafyadgsqidvhADTKAMEQEIREKVSATeaagYRNYVDFVTKLYKYEMNDfiDRNIDSPLNlltpnlar 166
Cdd:PLN02328  319 KVRDICPLYL------------PDGKAVDAEIDSKIEAS----FNKLLDRVCKLRQAMIEE--VKSVDVNLG-------- 372

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159 167 lIALGGFRHlqpkVNQFLKDPRLQKVYSFQAM---YAGVSPQQALAiyavIAYMDSVNGvfFPKGGMHA-VPRALAAAAQ 242
Cdd:PLN02328  373 -TALEAFRH----VYKVAEDPQERMLLNWHLAnleYANASLMSNLS----MAYWDQDDP--YEMGGDHCfIPGGNDTFVR 441

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1849264159 243 K--HGVKFIYNSSVTSLEKSGSRVTaaITDKGERFECDAIVMNPDLPVVWK-------DLLGKEPLSIKRLKY 306
Cdd:PLN02328  442 ElaKDLPIFYERTVESIRYGVDGVI--VYAGGQEFHGDMVLCTVPLGVLKKgsiefypELPQRKKDAIQRLGY 512
PLN02576 PLN02576
protoporphyrinogen oxidase
 7-103 9.65e-07

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 51.17  E-value: 9.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   7 GPSQKVVVVGAGLAGLSAALRLAGA-GRDVTVIERESVPGGRNGLLNKDGYAFDTGP-TVLTMPSLIQdafSAVGEDMKD 84
Cdd:PLN02576   10 ASSKDVAVVGAGVSGLAAAYALASKhGVNVLVTEARDRVGGNITSVSEDGFIWEEGPnSFQPSDPELT---SAVDSGLRD 86

                          90
                  ....*....|....*....
gi 1849264159  85 WLELmPVSPLYRAFYADGS 103
Cdd:PLN02576   87 DLVF-PDPQAPRYVVWNGK 104
GG-red-SF TIGR02032
geranylgeranyl reductase family; This model represents a subfamily which includes ...
 12-45 1.93e-06

geranylgeranyl reductase family; This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]


Pssm-ID: 273936 [Multi-domain]  Cd Length: 295  Bit Score: 49.62  E-value: 1.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPG 45
Cdd:TIGR02032   3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36
PLN02487 PLN02487
zeta-carotene desaturase
 6-55 2.69e-06

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 49.80  E-value: 2.69e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1849264159   6 KGPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNG-LLNKDG 55
Cdd:PLN02487   72 KGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGsFVDKNG 122
PRK00711 PRK00711
D-amino acid dehydrogenase;
11-45 5.44e-06

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 48.64  E-value: 5.44e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPG 45
Cdd:PRK00711    2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA 36
PRK05329 PRK05329
glycerol-3-phosphate dehydrogenase subunit GlpB;
12-38 7.87e-06

glycerol-3-phosphate dehydrogenase subunit GlpB;


Pssm-ID: 235412  Cd Length: 422  Bit Score: 48.31  E-value: 7.87e-06
                          10        20
                  ....*....|....*....|....*..
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVI 38
Cdd:PRK05329    5 VLVIGGGLAGLTAALAAAEAGKRVALV 31
NadB COG0029
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ...
 12-46 9.24e-06

Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 439800 [Multi-domain]  Cd Length: 521  Bit Score: 48.18  E-value: 9.24e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRdVTVIERESVPGG 46
Cdd:COG0029     7 VLVIGSGIAGLSAALKLAERGR-VTLLTKGELGES 40
PRK09126 PRK09126
FAD-dependent hydroxylase;
12-42 9.48e-06

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 47.63  E-value: 9.48e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERES 42
Cdd:PRK09126    6 IVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 12-46 1.21e-05

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 47.77  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVpGG 46
Cdd:COG1249     6 LVVIGAGPGGYVAAIRAAQLGLKVALVEKGRL-GG 39
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 8-74 1.31e-05

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 47.52  E-value: 1.31e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLA----GAGRDVTVIERESVPGGRNGLLNKDGYAFDTGPTVL-----TMPSLIQDA 74
Cdd:TIGR00562   1 GKKHVVIIGGGISGLCAAYYLEkeipELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFlerkkSAPDLVKDL 76
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
8-61 1.37e-05

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 47.42  E-value: 1.37e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAgRDVTVIERESVPGG--RNGLLNKDG--YAFDTG 61
Cdd:COG2907     2 ARMRIAVIGSGISGLTAAWLLSRR-HDVTLFEANDRLGGhtHTVDVDLDGrtVPVDTG 58
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
7-47 1.54e-05

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 47.06  E-value: 1.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1849264159   7 GPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR 47
Cdd:COG1251   140 APGKRVVVIGGGLIGLEAAAALRKRGLEVTVVERAPRLLPR 180
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 12-41 1.64e-05

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 47.20  E-value: 1.64e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERE 41
Cdd:PRK12834    7 VIVVGAGLAGLVAAAELADAGKRVLLLDQE 36
PLN02529 PLN02529
lysine-specific histone demethylase 1
 12-66 1.96e-05

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 47.19  E-value: 1.96e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR---NGLLNKDGY-AFDTGPTVLT 66
Cdd:PLN02529  163 VIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRvytQKMGRKGQFaAVDLGGSVIT 221
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 11-46 1.97e-05

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 47.18  E-value: 1.97e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12771  139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
PRK13984 PRK13984
putative oxidoreductase; Provisional
 10-46 1.97e-05

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 47.07  E-value: 1.97e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK13984  284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
PTZ00306 PTZ00306
NADH-dependent fumarate reductase; Provisional
 3-46 2.55e-05

NADH-dependent fumarate reductase; Provisional


Pssm-ID: 140327 [Multi-domain]  Cd Length: 1167  Bit Score: 47.08  E-value: 2.55e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1849264159    3 KRIKG--PSqKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PTZ00306   402 KRIAGslPA-RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446
PRK06370 PRK06370
FAD-containing oxidoreductase;
13-40 2.71e-05

FAD-containing oxidoreductase;


Pssm-ID: 235787 [Multi-domain]  Cd Length: 463  Bit Score: 46.35  E-value: 2.71e-05
                          10        20
                  ....*....|....*....|....*...
gi 1849264159  13 VVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK06370    9 IVIGAGQAGPPLAARAAGLGMKVALIER 36
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
11-47 2.93e-05

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 45.88  E-value: 2.93e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESvPGGR 47
Cdd:COG0492     2 DVVIIGAGPAGLTAAIYAARAGLKTLVIEGGE-PGGQ 37
FAD_oxidored pfam12831
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ...
 12-46 4.63e-05

FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.


Pssm-ID: 432816 [Multi-domain]  Cd Length: 420  Bit Score: 45.68  E-value: 4.63e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:pfam12831   2 VVVVGGGPAGVAAAIAAARAGAKVLLVERRGFLGG 36
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 11-52 4.76e-05

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 45.39  E-value: 4.76e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIER--ESVPGGRNGLLN 52
Cdd:pfam01494   3 DVLIVGGGPAGLMLALLLARAGVRVVLVERhaTTSVLPRAHGLN 46
PLN02612 PLN02612
phytoene desaturase
 11-93 5.53e-05

phytoene desaturase


Pssm-ID: 215330 [Multi-domain]  Cd Length: 567  Bit Score: 45.60  E-value: 5.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR-NGLLNKDGYAFDTGPTVL--TMPSlIQDAFSAVG-EDMKDWL 86
Cdd:PLN02612   95 KVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKvAAWKDEDGDWYETGLHIFfgAYPN-VQNLFGELGiNDRLQWK 173

                          90
                  ....*....|..
gi 1849264159  87 E-----LMPVSP 93
Cdd:PLN02612  174 EhsmifAMPNKP 185
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 11-44 7.87e-05

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 41.04  E-value: 7.87e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVP 44
Cdd:pfam00070   1 RVVVVGGGYIGLELAGALARLGSKVTVVERRDRL 34
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
9-44 7.98e-05

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 44.75  E-value: 7.98e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1849264159   9 SQKVVVVGAGLAGLSAA--LRLAGAGRDVTVIERESVP 44
Cdd:COG1251     1 KMRIVIIGAGMAGVRAAeeLRKLDPDGEITVIGAEPHP 38
PRK12831 PRK12831
putative oxidoreductase; Provisional
 3-46 8.01e-05

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 45.01  E-value: 8.01e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1849264159   3 KRIKGPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12831  134 ETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177
YhiN COG2081
Predicted flavoprotein YhiN [General function prediction only];
13-40 8.20e-05

Predicted flavoprotein YhiN [General function prediction only];


Pssm-ID: 441684 [Multi-domain]  Cd Length: 402  Bit Score: 45.04  E-value: 8.20e-05
                          10        20
                  ....*....|....*....|....*...
gi 1849264159  13 VVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:COG2081     1 IVIGAGAAGLMAAITAAERGARVLLLEK 28
PRK05249 PRK05249
Si-specific NAD(P)(+) transhydrogenase;
12-46 9.38e-05

Si-specific NAD(P)(+) transhydrogenase;


Pssm-ID: 235373 [Multi-domain]  Cd Length: 461  Bit Score: 44.76  E-value: 9.38e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK05249    8 LVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 10-46 1.01e-04

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 45.10  E-value: 1.01e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12814  194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
PRK07121 PRK07121
FAD-binding protein;
12-46 1.12e-04

FAD-binding protein;


Pssm-ID: 180854 [Multi-domain]  Cd Length: 492  Bit Score: 44.49  E-value: 1.12e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK07121   23 VVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57
PRK06134 PRK06134
putative FAD-binding dehydrogenase; Reviewed
 12-46 1.14e-04

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 180419 [Multi-domain]  Cd Length: 581  Bit Score: 44.71  E-value: 1.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK06134   15 VLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49
HI0933_like pfam03486
HI0933-like protein;
11-45 1.23e-04

HI0933-like protein;


Pssm-ID: 427330 [Multi-domain]  Cd Length: 406  Bit Score: 44.49  E-value: 1.23e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPG 45
Cdd:pfam03486   2 DVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLG 36
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
 10-62 2.09e-04

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 43.53  E-value: 2.09e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNGLLNKDGYAFDTGP 62
Cdd:COG0771     5 KKVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPAPELAAAELEAPGVEVVLGE 57
PLN02976 PLN02976
amine oxidase
 10-47 2.10e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 44.09  E-value: 2.10e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1849264159   10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR 47
Cdd:PLN02976   694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731
sdhA PRK08641
succinate dehydrogenase flavoprotein subunit; Reviewed
 10-55 2.61e-04

succinate dehydrogenase flavoprotein subunit; Reviewed


Pssm-ID: 236319 [Multi-domain]  Cd Length: 589  Bit Score: 43.42  E-value: 2.61e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDV-----TVIER-ESV--PGGRNGLLNKDG 55
Cdd:PRK08641    4 GKVIVVGGGLAGLMATIKAAEAGVHVdlfslVPVKRsHSVcaQGGINGAVNTKG 57
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
11-40 3.03e-04

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 43.20  E-value: 3.03e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1849264159  11 KVVVVGAGLAGLSAALRLA---GAGRDVTVIER 40
Cdd:COG1252     3 RIVIVGGGFAGLEAARRLRkklGGDAEVTLIDP 35
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
12-44 4.19e-04

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 42.63  E-value: 4.19e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVP 44
Cdd:PRK07608    8 VVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40
PRK00711 PRK00711
D-amino acid dehydrogenase;
242-282 4.31e-04

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 42.48  E-value: 4.31e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1849264159 242 QKHGVKFIYNSSVTSLEKSGSRVTAAITDkGERFECDAIVM 282
Cdd:PRK00711  212 EQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVV 251
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 1-40 4.40e-04

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 42.36  E-value: 4.40e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1849264159   1 MVKRIKGPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:COG0569    87 MERGIKKLKMHVIIIGAGRVGRSLARELEEEGHDVVVIDK 126
PRK10157 PRK10157
putative oxidoreductase FixC; Provisional
 13-48 5.38e-04

putative oxidoreductase FixC; Provisional


Pssm-ID: 182273 [Multi-domain]  Cd Length: 428  Bit Score: 42.21  E-value: 5.38e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1849264159  13 VVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRN 48
Cdd:PRK10157    9 IIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN 44
PRK07804 PRK07804
L-aspartate oxidase; Provisional
 12-38 6.00e-04

L-aspartate oxidase; Provisional


Pssm-ID: 236102 [Multi-domain]  Cd Length: 541  Bit Score: 42.27  E-value: 6.00e-04
                          10        20
                  ....*....|....*....|....*..
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVI 38
Cdd:PRK07804   19 VVVVGSGVAGLTAALAARRAGRRVLVV 45
PRK12842 PRK12842
putative succinate dehydrogenase; Reviewed
 12-46 6.33e-04

putative succinate dehydrogenase; Reviewed


Pssm-ID: 237224 [Multi-domain]  Cd Length: 574  Bit Score: 42.37  E-value: 6.33e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12842   12 VLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 6-49 6.45e-04

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 41.72  E-value: 6.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1849264159   6 KGPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRNG 49
Cdd:COG0446   121 EFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVERAPRLLGVLD 164
PRK10015 PRK10015
oxidoreductase; Provisional
 13-48 6.99e-04

oxidoreductase; Provisional


Pssm-ID: 182194 [Multi-domain]  Cd Length: 429  Bit Score: 41.89  E-value: 6.99e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1849264159  13 VVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGRN 48
Cdd:PRK10015    9 IVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN 44
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 12-46 7.86e-04

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 41.70  E-value: 7.86e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIEREsVPGG 46
Cdd:PRK06292    6 VIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGG 39
TrmFO COG1206
Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and ...
 9-39 8.89e-04

Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and biogenesis]; Folate-dependent tRNA-U54 methylase TrmFO/GidA is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440819  Cd Length: 436  Bit Score: 41.58  E-value: 8.89e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIE 39
Cdd:COG1206     1 MKPVTVIGGGLAGSEAAWQLAERGVPVRLYE 31
PLN02676 PLN02676
polyamine oxidase
 8-47 8.99e-04

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 41.62  E-value: 8.99e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1849264159   8 PSQKVVVVGAGLAGLSAALRLAGAG-RDVTVIERESVPGGR 47
Cdd:PLN02676   25 PSPSVIIVGAGMSGISAAKTLSEAGiEDILILEATDRIGGR 65
PRK12844 PRK12844
3-ketosteroid-delta-1-dehydrogenase; Reviewed
 12-101 9.82e-04

3-ketosteroid-delta-1-dehydrogenase; Reviewed


Pssm-ID: 183787 [Multi-domain]  Cd Length: 557  Bit Score: 41.66  E-value: 9.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR------------NGLLNKDGYA---------FDT--GPTVLTMP 68
Cdd:PRK12844    9 VVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGStamsggvlwlpnNPLMKAAGVPdshedalayLDAvvGDQGPASS 88

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1849264159  69 SLIQDAFSAVGEDMKDWLELMPVSPLYRAFYAD 101
Cdd:PRK12844   89 PERREAYLRAGPAMVSFLEHQGMRFARCEGWSD 121
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
12-41 1.02e-03

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 41.43  E-value: 1.02e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERE 41
Cdd:PRK06183   13 VVIVGAGPVGLTLANLLGQYGVRVLVLERW 42
PRK12839 PRK12839
FAD-dependent oxidoreductase;
12-55 1.04e-03

FAD-dependent oxidoreductase;


Pssm-ID: 237223 [Multi-domain]  Cd Length: 572  Bit Score: 41.74  E-value: 1.04e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG------------RNGLLNKDG 55
Cdd:PRK12839   11 VVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGatawsggwmwtpGNSLARADG 66
PRK07494 PRK07494
UbiH/UbiF family hydroxylase;
12-41 1.07e-03

UbiH/UbiF family hydroxylase;


Pssm-ID: 181001 [Multi-domain]  Cd Length: 388  Bit Score: 41.43  E-value: 1.07e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERE 41
Cdd:PRK07494   10 IAVIGGGPAGLAAAIALARAGASVALVAPE 39
PLN02568 PLN02568
polyamine oxidase
 11-47 1.09e-03

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 41.35  E-value: 1.09e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGR-----DVTVIERESVPGGR 47
Cdd:PLN02568    7 RIVIIGAGMAGLTAANKLYTSSAandmfELTVVEGGDRIGGR 48
PRK06475 PRK06475
FAD-binding protein;
10-40 1.36e-03

FAD-binding protein;


Pssm-ID: 180582 [Multi-domain]  Cd Length: 400  Bit Score: 40.96  E-value: 1.36e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK06475    3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33
PRK13977 PRK13977
myosin-cross-reactive antigen; Provisional
 9-56 1.42e-03

myosin-cross-reactive antigen; Provisional


Pssm-ID: 237575  Cd Length: 576  Bit Score: 41.35  E-value: 1.42e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1849264159   9 SQKVVVVGAGLAGLSAA---LRLAG-AGRDVTVIERESVPGGRN-GLLNKD-GY 56
Cdd:PRK13977   22 NKKAYIIGSGLASLAAAvflIRDGQmPGENITILEELDVPGGSLdGAGNPEkGY 75
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 4-64 1.45e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 40.76  E-value: 1.45e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1849264159   4 RIKGPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR---------NGLLNKDGYAFDTGPTV 64
Cdd:pfam07992 147 RLKLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEALDRLLRAfdeeisaalEKALEKNGVEVRLGTSV 216
PRK07236 PRK07236
hypothetical protein; Provisional
 11-40 1.78e-03

hypothetical protein; Provisional


Pssm-ID: 235980 [Multi-domain]  Cd Length: 386  Bit Score: 40.68  E-value: 1.78e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK07236    8 RAVVIGGSLGGLFAALLLRRAGWDVDVFER 37
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
 11-46 2.02e-03

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 40.88  E-value: 2.02e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12778  433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
9-42 2.02e-03

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 40.29  E-value: 2.02e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIERES 42
Cdd:PRK04965  141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174
PRK07538 PRK07538
hypothetical protein; Provisional
 11-39 2.16e-03

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 40.26  E-value: 2.16e-03
                          10        20
                  ....*....|....*....|....*....
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIE 39
Cdd:PRK07538    2 KVLIAGGGIGGLTLALTLHQRGIEVVVFE 30
PRK06847 PRK06847
hypothetical protein; Provisional
 10-40 2.39e-03

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 40.24  E-value: 2.39e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK06847    5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
10-40 2.55e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 39.72  E-value: 2.55e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:COG0492   142 KDVVVVGGGDSALEEALYLTKFASKVTLIHR 172
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 12-46 2.60e-03

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 40.13  E-value: 2.60e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVpGG 46
Cdd:PRK06416    7 VIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKL-GG 40
PLN02172 PLN02172
flavin-containing monooxygenase FMO GS-OX
 9-46 2.72e-03

flavin-containing monooxygenase FMO GS-OX


Pssm-ID: 215116 [Multi-domain]  Cd Length: 461  Bit Score: 40.23  E-value: 2.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PLN02172   10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 1-46 2.85e-03

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 39.97  E-value: 2.85e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1849264159   1 MVKRIKGPSQ-KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12770    9 MCKEKPPPTGkKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55
PRK07845 PRK07845
flavoprotein disulfide reductase; Reviewed
 10-45 2.90e-03

flavoprotein disulfide reductase; Reviewed


Pssm-ID: 236112 [Multi-domain]  Cd Length: 466  Bit Score: 40.23  E-value: 2.90e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPG 45
Cdd:PRK07845    2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGG 37
PRK07512 PRK07512
L-aspartate oxidase; Provisional
 12-42 2.94e-03

L-aspartate oxidase; Provisional


Pssm-ID: 236036 [Multi-domain]  Cd Length: 513  Bit Score: 40.28  E-value: 2.94e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  12 VVVVGAGLAGLSAALRLagAGRDVTVIERES 42
Cdd:PRK07512   12 PVIVGGGLAGLMAALKL--APRPVVVLSPAP 40
PRK06753 PRK06753
hypothetical protein; Provisional
 11-44 2.97e-03

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 40.06  E-value: 2.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIERESVP 44
Cdd:PRK06753    2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35
PRK06185 PRK06185
FAD-dependent oxidoreductase;
12-40 3.09e-03

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 39.84  E-value: 3.09e-03
                          10        20
                  ....*....|....*....|....*....
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK06185    9 CCIVGGGPAGMMLGLLLARAGVDVTVLEK 37
PRK12843 PRK12843
FAD-dependent oxidoreductase;
12-46 3.23e-03

FAD-dependent oxidoreductase;


Pssm-ID: 237225 [Multi-domain]  Cd Length: 578  Bit Score: 40.10  E-value: 3.23e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK12843   19 VIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53
PRK05335 PRK05335
tRNA (uracil-5-)-methyltransferase Gid; Reviewed
 9-39 3.52e-03

tRNA (uracil-5-)-methyltransferase Gid; Reviewed


Pssm-ID: 235416  Cd Length: 436  Bit Score: 39.74  E-value: 3.52e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159   9 SQKVVVVGAGLAGLSAALRLAGAGRDVTVIE 39
Cdd:PRK05335    2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYE 32
PLN02268 PLN02268
probable polyamine oxidase
 8-47 3.65e-03

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 39.67  E-value: 3.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1849264159   8 PSqkVVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGGR 47
Cdd:PLN02268    1 PS--VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38
glycerol3P_GlpB TIGR03378
glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Members of this protein family are ...
 12-38 3.88e-03

glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic]


Pssm-ID: 213807  Cd Length: 419  Bit Score: 39.62  E-value: 3.88e-03
                          10        20
                  ....*....|....*....|....*..
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVI 38
Cdd:TIGR03378   3 VIIIGGGLAGLSCALRLAEAGKKCAII 29
PRK08401 PRK08401
L-aspartate oxidase; Provisional
 11-58 4.10e-03

L-aspartate oxidase; Provisional


Pssm-ID: 236259 [Multi-domain]  Cd Length: 466  Bit Score: 39.78  E-value: 4.10e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVIEresvPGGR--NGLLNKDGYAF 58
Cdd:PRK08401    3 KVGIVGGGLAGLTAAISLAKKGFDVTIIG----PGIKksNSYLAQAGIAF 48
PRK13748 PRK13748
putative mercuric reductase; Provisional
 7-46 4.67e-03

putative mercuric reductase; Provisional


Pssm-ID: 184298 [Multi-domain]  Cd Length: 561  Bit Score: 39.36  E-value: 4.67e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1849264159   7 GPSQKVVVVGAGLAGLSAALRLAGAGRDVTVIEReSVPGG 46
Cdd:PRK13748   96 ERPLHVAVIGSGGAAMAAALKAVEQGARVTLIER-GTIGG 134
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
12-48 4.76e-03

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 39.36  E-value: 4.76e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1849264159  12 VVVVGAGLAGLSAALRLAGA-GRDVTVIERESVPG----GRN 48
Cdd:COG0579     7 VVIIGAGIVGLALARELSRYeDLKVLVLEKEDDVAqessGNN 48
ubiF PRK08020
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
 12-44 4.77e-03

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed


Pssm-ID: 181199 [Multi-domain]  Cd Length: 391  Bit Score: 39.20  E-value: 4.77e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVP 44
Cdd:PRK08020    8 IAIVGGGMVGAALALGLAQHGFSVAVLEHAAPA 40
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
10-40 5.96e-03

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 38.86  E-value: 5.96e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK08163    5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35
GIDA pfam01134
Glucose inhibited division protein A;
11-38 6.36e-03

Glucose inhibited division protein A;


Pssm-ID: 250388 [Multi-domain]  Cd Length: 391  Bit Score: 38.69  E-value: 6.36e-03
                          10        20
                  ....*....|....*....|....*...
gi 1849264159  11 KVVVVGAGLAGLSAALRLAGAGRDVTVI 38
Cdd:pfam01134   1 DVIVIGGGHAGCEAALAAARMGAKVLLI 28
PRK07843 PRK07843
3-oxosteroid 1-dehydrogenase;
12-46 6.77e-03

3-oxosteroid 1-dehydrogenase;


Pssm-ID: 236111 [Multi-domain]  Cd Length: 557  Bit Score: 38.86  E-value: 6.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1849264159  12 VVVVGAGLAGLSAALRLAGAGRDVTVIERESVPGG 46
Cdd:PRK07843   10 VVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44
Thi4 pfam01946
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
 12-46 8.69e-03

Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.


Pssm-ID: 460393  Cd Length: 232  Bit Score: 37.84  E-value: 8.69e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1849264159  12 VVVVGAGLAGLSAALRLAGA-GRDVTVIERESVPGG 46
Cdd:pfam01946  20 VVIVGAGSSGLTAAYYLAKNrGLKVAIIERSVSPGG 55
PRK12409 PRK12409
D-amino acid dehydrogenase small subunit; Provisional
 10-40 8.84e-03

D-amino acid dehydrogenase small subunit; Provisional


Pssm-ID: 237093 [Multi-domain]  Cd Length: 410  Bit Score: 38.47  E-value: 8.84e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1849264159  10 QKVVVVGAGLAGLSAALRLAGAGRDVTVIER 40
Cdd:PRK12409    2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDR 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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