|
Name |
Accession |
Description |
Interval |
E-value |
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
10-250 |
1.11e-100 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 293.48 E-value: 1.11e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:COG0411 9 GLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGIARTFQNP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAER-----RRWWNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:COG0411 89 RLFPELTVLENVLVAAHARLGRGllaalLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRA 242
Cdd:COG0411 169 TEPKLLLLDEPAAGLNPEETEELAELIRrlRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVRADPRVIE 248
|
....*...
gi 1900544068 243 AYLGEGAT 250
Cdd:COG0411 249 AYLGEEAA 256
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
10-240 |
1.69e-94 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 277.01 E-value: 1.69e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:cd03219 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAERRRWWNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGART 169
Cdd:cd03219 85 RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 170 LLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRV 240
Cdd:cd03219 165 LLLDEPAAGLNPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-247 |
5.43e-72 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 220.37 E-value: 5.43e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRL 80
Cdd:COG4674 6 MHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 GIGRSFQQTSAFARLTVFDNLRCAAlhapAERRRWWNRL--RESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALD 158
Cdd:COG4674 86 GIGRKFQKPTVFEELTVFENLELAL----KGDRGVFASLfaRLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 159 LGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADS 238
Cdd:COG4674 162 IGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQADP 241
|
....*....
gi 1900544068 239 RVRAAYLGE 247
Cdd:COG4674 242 RVIEVYLGR 250
|
|
| urea_trans_UrtD |
TIGR03411 |
urea ABC transporter, ATP-binding protein UrtD; Members of this protein family are ABC ... |
10-247 |
8.79e-66 |
|
urea ABC transporter, ATP-binding protein UrtD; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274568 [Multi-domain] Cd Length: 242 Bit Score: 204.33 E-value: 8.79e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:TIGR03411 7 GLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAAlhapAERRRWWNRL--RESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:TIGR03411 87 TVFENLTVFENLELAL----PRDKSVFASLffRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYLGE 247
Cdd:TIGR03411 163 KLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADPRVIEVYLGR 242
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-236 |
6.00e-51 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 166.01 E-value: 6.00e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIgrS 85
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGY--V 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRCAALHAPAERRRWWNRlresasidlaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALAS 165
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYGLPRKEARER----------IDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLH 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:COG1131 149 DPELLILDEPTSGLDPEARRELWELLRElAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
10-246 |
3.24e-49 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 161.69 E-value: 3.24e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:COG0410 8 NLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGYVPEGR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAERRRWWN---------RLREsasidlaaarvlhdvgldtRRDTPAGELSYAEQRALDLG 160
Cdd:COG0410 88 RIFPSLTVEENLLLGAYARRDRAEVRADlervyelfpRLKE-------------------RRRQRAGTLSGGEQQMLAIG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 161 IALASGARTLLLDEPTAGMS---RAQAARMIALIRAttQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:COG0410 149 RALMSRPKLLLLDEPSLGLApliVEEIFEIIRRLNR--EGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLAD 226
|
....*....
gi 1900544068 238 SRVRAAYLG 246
Cdd:COG0410 227 PEVREAYLG 235
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
10-247 |
1.34e-48 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 160.54 E-value: 1.34e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:PRK11300 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAA------------LHAPAERRrwwnrlRESASIDLAAARvLHDVGLDTRRDTPAGELSYAEQRAL 157
Cdd:PRK11300 90 RLFREMTVIENLLVAQhqqlktglfsglLKTPAFRR------AESEALDRAATW-LERVGLLEHANRQAGNLAYGQQRRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIR 235
Cdd:PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNehNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242
|
250
....*....|..
gi 1900544068 236 ADSRVRAAYLGE 247
Cdd:PRK11300 243 NNPDVIKAYLGE 254
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
10-242 |
5.40e-48 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 165.19 E-value: 5.40e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:COG1129 9 GISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGIAIIHQEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLrcaALHAPAERRRW--WNRLREsasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:COG1129 89 NLVPNLSVAENI---FLGREPRRGGLidWRAMRR------RARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRA 242
Cdd:COG1129 160 RVLILDEPTASLTEREVERLFRIIRRlKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDELVRL 235
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
10-237 |
6.00e-47 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 155.28 E-value: 6.00e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:cd03224 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAERRRWwnrlresasiDLAAARVLHDVgLDTRRDTPAGELSYAEQRALDLGIALASGART 169
Cdd:cd03224 85 RIFPELTVEENLLLGAYARRRAKRKA----------RLERVYELFPR-LKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 170 LLLDEPTAGMS---RAQAARMIALIRAttQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:cd03224 154 LLLDEPSEGLApkiVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-244 |
6.15e-46 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 153.32 E-value: 6.15e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVA--- 77
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRIGyvp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 78 SRLGIGRSFQqtsafarLTVFDNLRCAALHapaeRRRWWNRLreSASIDLAAARVLHDVGLDTRRDTPAGELSYAE-QRA 156
Cdd:COG1121 82 QRAEVDWDFP-------ITVRDVVLMGRYG----RRGLFRRP--SRADREAVDEALERVGLEDLADRPIGELSGGQqQRV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 157 LdLGIALASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGaVVATGAPDAIR 235
Cdd:COG1121 149 L-LARALAQDPDLLLLDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEEVL 226
|
....*....
gi 1900544068 236 ADSRVRAAY 244
Cdd:COG1121 227 TPENLSRAY 235
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-232 |
5.15e-44 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 154.80 E-value: 5.15e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRL 80
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 GIGRSFQQTSAFARLTVFDNLrcaALHAPAERRRWWNRLRESASIdlaaARVLHDVGLDTRRDTPAGELSYAEQRALDLG 160
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENI---VLGLEPTKGGRLDRKAARARI----RELSERYGLDVDPDAKVEDLSVGEQQRVEIL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 161 IALASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPD 232
Cdd:COG3845 154 KALYRGARILILDEPTAVLTPQEADELFEILRRlAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTA 226
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
6-236 |
6.63e-44 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 148.08 E-value: 6.63e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIgrS 85
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGV--L 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLR-CAALHAPAERRrwwnrlresasIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:COG4555 80 PDERGLYDRLTVRENIRyFAELYGLFDEE-----------LKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 165 SGARTLLLDEPTAG---MSRAQaarMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:COG4555 149 HDPKVLLLDEPTNGldvMARRL---LREILRAlKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELRE 221
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
16-237 |
1.06e-42 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 144.78 E-value: 1.06e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPV-VASRLGIGrsFQQTSA--F 92
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLReLRRKVGLV--FQNPDDqlF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARlTVFD-------NLRCaalhAPAERRRwwnrlresasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALAS 165
Cdd:COG1122 90 AP-TVEEdvafgpeNLGL----PREEIRE-------------RVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAM 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:COG1122 152 EPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSD 224
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
10-246 |
7.01e-42 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 142.68 E-value: 7.01e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGART 169
Cdd:cd03218 85 SIFRKLTVEENILAVLEIRGLSKKEREEKLEE----------LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 170 LLLDEPTAG---MSRAQAARMIALIRAttQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYLG 246
Cdd:cd03218 155 LLLDEPFAGvdpIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-228 |
1.05e-41 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 139.87 E-value: 1.05e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRS 85
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQqtsafarltvfdnlrcaalhapaerrrwwnrlresasidlaaarvlhdvgldtrrdtpageLSYAEQRALDLGIALAS 165
Cdd:cd03216 81 YQ-------------------------------------------------------------LSVGERQMVEIARALAR 99
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRlRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
16-223 |
2.18e-41 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 140.68 E-value: 2.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLgIGRSFQQTSA-FAR 94
Cdd:cd03225 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK-VGLVFQNPDDqFFG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFD----NLRcaalhapaerrrwwNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTL 170
Cdd:cd03225 91 PTVEEevafGLE--------------NLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 171 LLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:cd03225 157 LLDEPTAGLDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
6-241 |
3.27e-41 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 141.10 E-value: 3.27e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPV--VASRLGIG 83
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAelYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQQTSAFARLTVFDNLrcaALhapaerrrwwnRLRE-----SASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALD 158
Cdd:cd03261 81 MLFQSGALFDSLTVFENV---AF-----------PLREhtrlsEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 159 LGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
....*..
gi 1900544068 237 --DSRVR 241
Cdd:cd03261 227 sdDPLVR 233
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
14-232 |
1.48e-40 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 138.79 E-value: 1.48e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIgrSFQQTSAFA 93
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY--CPQFDALFD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLRcaaLHApaerrrwwnRLR--ESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLL 171
Cdd:cd03263 89 ELTVREHLR---FYA---------RLKglPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 172 LDEPTAGMSrAQAARMI-ALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPD 232
Cdd:cd03263 157 LDEPTSGLD-PASRRAIwDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
14-244 |
4.96e-40 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 138.64 E-value: 4.96e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPV-VASRLGIgrSFQQTSAF 92
Cdd:COG1120 10 GYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRReLARRIAY--VPQEPPAP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARLTVFDnlrcAALHAPAERRRWWNRLRESasiDLAAA-RVLHDVGLDTRRDTPAGELSYAE-QRALdLGIALASGARTL 170
Cdd:COG1120 88 FGLTVRE----LVALGRYPHLGLFGRPSAE---DREAVeEALERTGLEHLADRPVDELSGGErQRVL-IARALAQEPPLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 171 LLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAY 244
Cdd:COG1120 160 LLDEPTSHLDLAHQLEVLELLRrlARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVY 235
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-242 |
1.75e-38 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 133.95 E-value: 1.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-----RGRGPV 75
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDItglseKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 76 vasRLGIGRSFQQtSA-FARLTVFDNLrcaALhapaerrrwwnRLRE-----SASIDLAAARVLHDVGLDTRRDTPAGEL 149
Cdd:COG1127 81 ---RRRIGMLFQG-GAlFDSLTVFENV---AF-----------PLREhtdlsEAEIRELVLEKLELVGLPGAADKMPSEL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 150 SYAEQ-RAldlGIA--LASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGA 224
Cdd:COG1127 143 SGGMRkRV---ALAraLALDPEILLYDEPTAGLDPITSAVIDELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGK 219
|
250 260
....*....|....*....|
gi 1900544068 225 VVATGAPDAIRA--DSRVRA 242
Cdd:COG1127 220 IIAEGTPEELLAsdDPWVRQ 239
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
10-248 |
8.79e-37 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 129.76 E-value: 8.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-------RgrgpvvaSRLGI 82
Cdd:COG1137 8 NLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIthlpmhkR-------ARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 83 GRSFQQTSAFARLTVFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGLDTRRDTPAGELSYAEQRALDLGIA 162
Cdd:COG1137 81 GYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEE----------LLEEFGITHLRKSKAYSLSGGERRRVEIARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 163 LASGARTLLLDEPTAG---MSRAQAARMIAliRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSR 239
Cdd:COG1137 151 LATNPKFILLDEPFAGvdpIAVADIQKIIR--HLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPL 228
|
....*....
gi 1900544068 240 VRAAYLGEG 248
Cdd:COG1137 229 VRKVYLGED 237
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-223 |
5.52e-36 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 125.59 E-value: 5.52e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIgrS 85
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY--L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRcaalhapaerrrwwnrlresasidlaaarvlhdvgldtrrdtpageLSYAEQRALDLGIALAS 165
Cdd:cd03230 79 PEEPSLYENLTVRENLK----------------------------------------------LSGGMKQRLALAQALLH 112
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:cd03230 113 DPELLILDEPTSGLDPESRREFWELLRElKKEGKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
14-219 |
2.05e-35 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 125.28 E-value: 2.05e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIgrSFQQTSAFA 93
Cdd:COG4133 11 RRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY--LGHADGLKP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLrcaalhapaerrRWWNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLD 173
Cdd:COG4133 89 ELTVRENL------------RFWAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1900544068 174 EPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDmDAVFGFAERITV 219
Cdd:COG4133 157 EPFTALDAAGVALLAELIAAhLARGGAVLLTTHQ-PLELAAARVLDL 202
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
14-229 |
1.76e-34 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 123.03 E-value: 1.76e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVA---SRLGIGRSFqqts 90
Cdd:cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGyvpQRRSIDRDF---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 91 afaRLTVFDNLRCAALHapaeRRRWWNRLRESasiDLAAARVLHD-VGLDTRRDTPAGELSYAE-QRALdLGIALASGAR 168
Cdd:cd03235 84 ---PISVRDVVLMGLYG----HKGLFRRLSKA---DKAKVDEALErVGLSELADRQIGELSGGQqQRVL-LARALVQDPD 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 169 TLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGaVVATG 229
Cdd:cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRReGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
8-229 |
2.04e-34 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 122.63 E-value: 2.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 8 LLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLGIGRSFQ 87
Cdd:cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP---ERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 QTSAFARLTVFDNLrcaalhAPAERRRWWNRLRESASIDLAAARvlhdVGLDTRRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:cd03259 80 DYALFPHLTVAENI------AFGLKLRGVPKAEIRARVRELLEL----VGLEGLLNRYPHELSGGQQQRVALARALAREP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRAT--TQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03259 150 SLLLLDEPLSALDAKLREELREELKELqrELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
6-241 |
3.59e-34 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 128.36 E-value: 3.59e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRS 85
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRCAALhapAERRRW------WNRLRESASIdlaaarVLHDVGLDTRRDTPAGELSYAEQRALDL 159
Cdd:PRK09700 86 YQELSVIDELTVLENLYIGRH---LTKKVCgvniidWREMRVRAAM------MLLRVGLKVDLDEKVANLSISHKQMLEI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 160 GIALASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADS 238
Cdd:PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQlRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD 236
|
...
gi 1900544068 239 RVR 241
Cdd:PRK09700 237 IVR 239
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-237 |
5.14e-34 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 122.68 E-value: 5.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQT-VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVV--ASRLGI 82
Cdd:cd03256 1 IEVENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 83 GRSFQQTSAFARLTVFDNLRCAALhapAERRRWWNRLRESASIDLAAAR-VLHDVGLDTRRDTPAGELSYAEQRALDLGI 161
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRL---GRRSTWRSLFGLFPKEEKQRALaALERVGLLDKAYQRADQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 162 ALASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKriNREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
10-237 |
1.39e-33 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 126.56 E-value: 1.39e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRF-----GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvASRLGIGR 84
Cdd:COG1123 265 NLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSR--RSLRELRR 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQ------QTSAFARLTVFDN----LRCAALHAPAERRRwwnrlresasidlAAARVLHDVGLDTR-RDTPAGELSYAE 153
Cdd:COG1123 343 RVQmvfqdpYSSLNPRMTVGDIiaepLRLHGLLSRAERRE-------------RVAELLERVGLPPDlADRYPHELSGGQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 154 -QRaldLGIA--LASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:COG1123 410 rQR---VAIAraLALEPKLLILDEPTSALDVSVQAQILNLLRdlQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVED 486
|
....*....
gi 1900544068 229 GAPDAIRAD 237
Cdd:COG1123 487 GPTEEVFAN 495
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-229 |
1.34e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 118.06 E-value: 1.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGeRHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGigrs 85
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 F--QQTSAFARLTVFDNLR-CAALHAPAERRrwwnrlresasIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIA 162
Cdd:cd03264 76 YlpQEFGVYPNFTVREFLDyIAWLKGIPSKE-----------VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 163 LASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-225 |
5.34e-32 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 116.82 E-value: 5.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQ----TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-----RGRGPVV 76
Cdd:cd03255 1 IELKNLSKTYGGGgekvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIsklseKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 77 ASRLGIgrSFQQTSAFARLTVFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGLDTRRDTPAGELSYAE-QR 155
Cdd:cd03255 81 RRHIGF--VFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEE----------LLERVGLGDRLNHYPSELSGGQqQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 156 AldlGIA--LASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFgFAERITVLVRGAV 225
Cdd:cd03255 149 V---AIAraLANDPKIILADEPTGNLDSETGKEVMELLRELNKeaGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-177 |
1.10e-31 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 113.90 E-value: 1.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRgPVVASRLGIGRSFQQTSAFARLTVFDN 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDD-ERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LR----CAALHAPAERRRwwnrlresasidlaAARVLHDVGLDTRRDTPAG----ELSYAEQRALDLGIALASGARTLLL 172
Cdd:pfam00005 80 LRlgllLKGLSKREKDAR--------------AEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLL 145
|
....*
gi 1900544068 173 DEPTA 177
Cdd:pfam00005 146 DEPTA 150
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
9-243 |
1.74e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 120.78 E-value: 1.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 9 LGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPT---RGRVVLHGVELRGRGPVVASRLgIGRS 85
Cdd:COG1123 10 LSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRGRR-IGMV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQ-TSAFARLTVFDNLRCAALhapaerrrwwNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAE-QRALdLGIAL 163
Cdd:COG1123 89 FQDpMTQLNPVTVGDQIAEALE----------NLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQrQRVA-IAMAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVR 241
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRELQRerGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQAL 237
|
..
gi 1900544068 242 AA 243
Cdd:COG1123 238 AA 239
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-223 |
1.83e-31 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 114.21 E-value: 1.83e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-RGRGPVVASRLGIGR 84
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtDLEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDNLRCAalhapaerrrwwnrlresasidlaaarvlhdvgldtrrdtpageLSYAEQRALDLGIALA 164
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG--------------------------------------------LSGGQQQRVALARALA 116
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSlqAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
10-232 |
2.48e-31 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 115.16 E-value: 2.48e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIgrSFQQT 89
Cdd:cd03265 5 NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI--VFQDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGART 169
Cdd:cd03265 83 SVDDELTGWENLYIHARLYGVPGAERRERIDE----------LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 170 LLLDEPTAGM---SRAQAARMIALIRAtTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPD 232
Cdd:cd03265 153 LFLDEPTIGLdpqTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPE 217
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
13-229 |
2.13e-30 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 113.06 E-value: 2.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 13 QRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP--VVASRLGIGRSFQQTS 90
Cdd:cd03258 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGkeLRKARRRIGMIFQHFN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 91 AFARLTVFDNLrcaALhaPAERRRWwnrlrESASIDLAAARVLHDVGLDTRRDTPAGELSYAE-QRaldLGIA--LASGA 167
Cdd:cd03258 93 LLSSRTVFENV---AL--PLEIAGV-----PKAEIEERVLELLELVGLEDKADAYPAQLSGGQkQR---VGIAraLANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRelGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-220 |
3.24e-30 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 113.26 E-value: 3.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRF----GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP-- 74
Cdd:COG1116 3 AAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPdr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 75 -VVasrlgigrsFQQTSAFARLTVFDN----LRCAALhAPAERRRWwnrlresasidlaAARVLHDVGLDTRRDTPAGEL 149
Cdd:COG1116 83 gVV---------FQEPALLPWLTVLDNvalgLELRGV-PKAERRER-------------ARELLELVGLAGFEDAYPHQL 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 150 SYAE-QRAldlGIA--LASGARTLLLDEPTAG---MSRAQAARMIALIRATTqGRTVLMIEHDMD-AVFgFAERITVL 220
Cdd:COG1116 140 SGGMrQRV---AIAraLANDPEVLLMDEPFGAldaLTRERLQDELLRLWQET-GKTVLFVTHDVDeAVF-LADRVVVL 212
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
14-244 |
3.68e-30 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 112.90 E-value: 3.68e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG-RGPVVASRLGIGRsfQQTS-A 91
Cdd:COG4559 10 RLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwSPWELARRRAVLP--QHSSlA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 92 FArLTVFDNLRCAALHAPAERRRwwnrlresasIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA------- 164
Cdd:COG4559 88 FP-FTVEEVVALGRAPHGSSAAQ----------DRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepvd 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAA 243
Cdd:COG4559 157 GGPRWLFLDEPTSALDLAHQHAVLRLARQlARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERV 236
|
.
gi 1900544068 244 Y 244
Cdd:COG4559 237 Y 237
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-228 |
6.51e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 111.41 E-value: 6.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFG----AQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvasrlG 81
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP------D 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 82 IGRSFQQTSAFARLTVFDN----LRcAALHAPAERRRwwnrlresasidlAAARVLHDVGLDTRRDTPAGELSYAEQRAL 157
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNvalgLE-LQGVPKAEARE-------------RAEELLELVGLSGFENAYPHQLSGGMRQRV 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 158 DLGIALASGARTLLLDEPTAG---MSRAQAARMIALIRATTqGRTVLMIEHDMD-AVFgFAERITVL--VRGAVVAT 228
Cdd:cd03293 141 ALARALAVDPDVLLLDEPFSAldaLTREQLQEELLDIWRET-GKTVLLVTHDIDeAVF-LADRVVVLsaRPGRIVAE 215
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-234 |
3.58e-29 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 112.50 E-value: 3.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGrgpVVASRL 80
Cdd:COG3842 1 MAMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTG---LPPEKR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 GIGRSFQQTSAFARLTVFDN----LRCAALhAPAERRRwwnrlresasidlAAARVLHDVGLDTRRDTPAGELSyAEQR- 155
Cdd:COG3842 78 NVGMVFQDYALFPHLTVAENvafgLRMRGV-PKAEIRA-------------RVAELLELVGLEGLADRYPHQLS-GGQQq 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 156 --AldLGIALASGARTLLLDEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:COG3842 143 rvA--LARALAPEPRVLLLDEPLSALDAKLREEMREELRRlqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTP 220
|
...
gi 1900544068 232 DAI 234
Cdd:COG3842 221 EEI 223
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
6-226 |
4.26e-29 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 109.37 E-value: 4.26e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRF-GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG--RGPVVASRLGI 82
Cdd:COG2884 2 IRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkRREIPYLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 83 GRSFQQTSAFARLTVFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGLDTRRDTPAGELSYAE-QRAldlGI 161
Cdd:COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVRE----------VLDLVGLSDKAKALPHELSGGEqQRV---AI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 162 --ALASGARTLLLDEPTAGMSRAQAAR-MIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVV 226
Cdd:COG2884 149 arALVNRPELLLADEPTGNLDPETSWEiMELLEEINRRGTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
25-247 |
1.04e-28 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 108.30 E-value: 1.04e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 25 DLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvASR----LgigrsFQQTSAFARLTVFDN 100
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPP--AERpvsmL-----FQENNLFPHLTVAQN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LrCAALHA-----PAERRRwwnrlresasIDLAAARV-LHdvGLDTRRdtPaGELSYAE-QRAldlgiALasgARTL--- 170
Cdd:COG3840 92 I-GLGLRPglkltAEQRAQ----------VEQALERVgLA--GLLDRL--P-GQLSGGQrQRV-----AL---ARCLvrk 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 171 ----LLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI--RADSRVRA 242
Cdd:COG3840 148 rpilLLDEPFSALDPALRQEMLDLVDelCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALldGEPPPALA 227
|
....*
gi 1900544068 243 AYLGE 247
Cdd:COG3840 228 AYLGI 232
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
16-238 |
1.11e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 113.32 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLgIGRSFQQTSAFARl 95
Cdd:COG4987 346 AGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR-IAVVPQRPHLFDT- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAalhapaerrrwwnrlRESASiDLAAARVLHDVGLDT--RR-----DTPAGE----LSYAEQRALDLGIALA 164
Cdd:COG4987 424 TLRENLRLA---------------RPDAT-DEELWAALERVGLGDwlAAlpdglDTWLGEggrrLSGGERRRLALARALL 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAPDAIRADS 238
Cdd:COG4987 488 RDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGL-ERMDRILVLEDGRIVEQGTHEELLAQN 560
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
5-244 |
1.30e-28 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 108.63 E-value: 1.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVV------LHGV---ELRGRGPV 75
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVrlfgerRGGEdvwELRKRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 76 VASRLgiGRSFQqtsafARLTVFDNLrCAALHA---------PAERRRwwnrlresasidlaAARVLHDVGLDTRRDTPA 146
Cdd:COG1119 83 VSPAL--QLRFP-----RDETVLDVV-LSGFFDsiglyreptDEQRER--------------ARELLELLGLAHLADRPF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 147 GELSYAEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGA 224
Cdd:COG1119 141 GTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDklAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
250 260
....*....|....*....|
gi 1900544068 225 VVATGAPDAIRADSRVRAAY 244
Cdd:COG1119 221 VVAAGPKEEVLTSENLSEAF 240
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
10-223 |
1.99e-28 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 105.40 E-value: 1.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELrGRGPVVASRLGIGRSFQqt 89
Cdd:cd00267 4 NLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AKLPLEELRRRIGYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 safarltvfdnlrcaalhapaerrrwwnrlresasidlaaarvlhdvgldtrrdtpageLSYAEQRALDLGIALASGART 169
Cdd:cd00267 81 -----------------------------------------------------------LSGGQRQRVALARALLLNPDL 101
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 170 LLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEeGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-234 |
6.62e-28 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 106.11 E-value: 6.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG-----ATRPTRGRVVLHGVELRGRG-PVVASR 79
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDIYDLDvDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 80 LGIGRSFQQTSAFaRLTVFDNLRcaalHAPAERRRWWNRlresaSIDLAAARVLHDVGLDTR--RDTPAGELSYAEQRAL 157
Cdd:cd03260 81 RRVGMVFQKPNPF-PGSIYDNVA----YGLRLHGIKLKE-----ELDERVEEALRKAALWDEvkDRLHALGLSGGQQQRL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
6-242 |
8.26e-28 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 110.53 E-value: 8.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRS 85
Cdd:PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLrCAALHAPAER-RRWWNRLRE-SASIDLaaarvlhdvgldtrrDTPAGELSYAEQRALDLGIAL 163
Cdd:PRK15439 92 PQEPLLFPNLSVKENI-LFGLPKRQASmQKMKQLLAAlGCQLDL---------------DSSAGSLEVADRQIVEILRGL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRA 242
Cdd:PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRElLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQA 235
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
19-226 |
1.27e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 106.32 E-value: 1.27e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLgIGRSFQQTSA--FARLT 96
Cdd:COG1101 20 RALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY-IGRVFQDPMMgtAPSMT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRCAALHApaeRRRWWNRLRESASIDLAAARVLH-DVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEP 175
Cdd:COG1101 99 IEENLALAYRRG---KRRGLRRGLTKKRRELFRELLATlGLGLENRLDTKVGLLSGGQRQALSLLMATLTKPKLLLLDEH 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 176 TAGMSRAQAARMIALIR--ATTQGRTVLMIEHDM-DAVfGFAERITVLVRGAVV 226
Cdd:COG1101 176 TAALDPKTAALVLELTEkiVEENNLTTLMVTHNMeQAL-DYGNRLIMMHEGRII 228
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
5-234 |
1.65e-27 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 105.50 E-value: 1.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLGIGR 84
Cdd:cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---QERNVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDNLRCAALHAPAERRrwwnrlRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSER------PPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 165 SGARTLLLDEPTAGMS---RAQAARMIALIRATTqGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:cd03296 153 VEPKVLLLDEPFGALDakvRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-223 |
1.67e-27 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 104.51 E-value: 1.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAsrlgigRS 85
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEW------RR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 ----FQQTSAFARLTVFDNLRcaalhapaerrRWWnRLRESASIDLAAARVLHDVGLDTR-RDTPAGELSYAEQRALDLG 160
Cdd:COG4619 75 qvayVPQEPALWGGTVRDNLP-----------FPF-QLRERKFDRERALELLERLGLPPDiLDKPVERLSGGERQRLALI 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 161 IALASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLReyLAEEGRAVLWVSHDPEQIERVADRVLTLEAG 207
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-234 |
2.43e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 105.01 E-value: 2.43e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRgrgPVVASRLGIGRS 85
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT---NLPPHKRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLrcaalhAPAERRRwwnRLREsASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALAS 165
Cdd:cd03300 78 FQNYALFPHLTVFENI------AFGLRLK---KLPK-AEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:cd03300 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKelGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
14-229 |
1.69e-26 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 101.36 E-value: 1.69e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvasrlgigrsfqqtSAFA 93
Cdd:cd03214 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP---------------KELA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RltvfdnlRCAALhapaerrrwwnrlresasidlaaARVLHDVGLDTRRDTPAGELSYAE-QRALdLGIALASGARTLLL 172
Cdd:cd03214 73 R-------KIAYV-----------------------PQALELLGLAHLADRPFNELSGGErQRVL-LARALAQEPPILLL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 173 DEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03214 122 DEPTSHLDIAHQIELLELLRrlARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
21-228 |
1.78e-26 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 106.92 E-value: 1.78e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTSAFARLTVFDN 100
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LRCAALhaPAeRRRWWNR--LRESASIDLAAarvlhdVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAG 178
Cdd:PRK11288 100 LYLGQL--PH-KGGIVNRrlLNYEAREQLEH------LGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 179 MSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:PRK11288 171 LSAREIEQLFRVIRElRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
16-226 |
2.99e-26 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 101.18 E-value: 2.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRgpvvASRLGIGRSFQQ-TSAFAR 94
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAK----ERRKSIGYVMQDvDYQLFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLRCAALHAPAERRRwwnrlresasidlaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:cd03226 87 DSVREELLLGLKELDAGNEQ--------------AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 175 PTAGMSRAQAARMIALIR-ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVV 226
Cdd:cd03226 153 PTSGLDYKNMERVGELIReLAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
20-236 |
3.21e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 106.84 E-value: 3.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP-VVASRLGIgrSFQQTSAFARlTVF 98
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPaSLRRQIGV--VLQDVFLFSG-TIR 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLRCAALHAPAErrrwwnRLRESAsiDLAAarvLHDV------GLDTRRDTPAGELSYAE-QRaldLGIA--LASGART 169
Cdd:COG2274 567 ENITLGDPDATDE------EIIEAA--RLAG---LHDFiealpmGYDTVVGEGGSNLSGGQrQR---LAIAraLLRNPRI 632
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 170 LLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:COG2274 633 LILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRLSTI-RLADRIIVLDKGRIVEDGTHEELLA 698
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-233 |
3.22e-26 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 101.74 E-value: 3.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRF----GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-----RG 71
Cdd:COG4181 4 SSAPIIELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLfaldeDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 72 RGPVVASRLGI-GRSFQQTSAfarLTVFDNLrcaALhaPAERRRwwnrLRESASidlAAARVLHDVGLDTRRDTPAGELS 150
Cdd:COG4181 84 RARLRARHVGFvFQSFQLLPT---LTALENV---ML--PLELAG----RRDARA---RARALLERVGLGHRLDHYPAQLS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 151 YAEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMdAVFGFAERITVLVRGAVVAT 228
Cdd:COG4181 149 GGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFElnRERGTTLVLVTHDP-ALAARCDRVLRLRAGRLVED 227
|
....*
gi 1900544068 229 GAPDA 233
Cdd:COG4181 228 TAATA 232
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-236 |
3.33e-26 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 106.75 E-value: 3.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRG--PVVASRL-- 80
Cdd:NF033858 1 VARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADARhrRAVCPRIay 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 ---GIGRSFQQTsafarLTVFDNLRC-AAL--HAPAERRRwwnRLresasidlaaARVLHDVGLDTRRDTPAGELSYAEQ 154
Cdd:NF033858 81 mpqGLGKNLYPT-----LSVFENLDFfGRLfgQDAAERRR---RI----------DELLRATGLAPFADRPAGKLSGGMK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 155 RALDLGIALASGARTLLLDEPTAG---MSRAQAARMIALIRATTQGRTVLMIEHDMDAvfgfAERITVLV---RGAVVAT 228
Cdd:NF033858 143 QKLGLCCALIHDPDLLILDEPTTGvdpLSRRQFWELIDRIRAERPGMSVLVATAYMEE----AERFDWLVamdAGRVLAT 218
|
....*...
gi 1900544068 229 GAPDAIRA 236
Cdd:NF033858 219 GTPAELLA 226
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
14-229 |
3.60e-26 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 101.81 E-value: 3.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLG--IGRSFQQ-TS 90
Cdd:cd03257 14 GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRkeIQMVFQDpMS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 91 AF-ARLTVFDNLrcaalhapAERRRWWNRLRESASIDLAAARVLHDVGLDTRR-DTPAGELSYAE-QRALdLGIALASGA 167
Cdd:cd03257 94 SLnPRMTIGEQI--------AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQrQRVA-IARALALNP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03257 165 KLLIADEPTSALDVSVQAQILDLLKklQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
6-225 |
5.14e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 100.95 E-value: 5.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTV-LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVE---LRGRGpVVASRLG 81
Cdd:cd03292 1 IEFINVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDvsdLRGRA-IPYLRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 82 IGRSFQQTSAFARLTVFDNLrCAALHAPAERRRWWNRlRESASIDLaaarvlhdVGLDTRRDTPAGELSYAEQRALDLGI 161
Cdd:cd03292 80 IGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRK-RVPAALEL--------VGLSHKHRALPAELSGGEQQRVAIAR 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 162 ALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAV 225
Cdd:cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKaGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
6-229 |
9.38e-26 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 102.85 E-value: 9.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRF----GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVE---LRGRGpVVAS 78
Cdd:COG1135 2 IELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDltaLSERE-LRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 79 RLGIGRSFQQTSAFARLTVFDN----LRCAalHAPAERRRwwnrlresasidlaaARV---LHDVGLDTRRDT-PAgELS 150
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENvalpLEIA--GVPKAEIR---------------KRVaelLELVGLSDKADAyPS-QLS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 151 YAE-QRaldLGIA--LASGARTLLLDEPTAgmsraqaarmiALIRATTQ-------------GRTVLMIEHDMDAVFGFA 214
Cdd:COG1135 143 GGQkQR---VGIAraLANNPKVLLCDEATS-----------ALDPETTRsildllkdinrelGLTIVLITHEMDVVRRIC 208
|
250
....*....|....*
gi 1900544068 215 ERITVLVRGAVVATG 229
Cdd:COG1135 209 DRVAVLENGRIVEQG 223
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
6-234 |
9.63e-26 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 100.93 E-value: 9.63e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-RGRGPVVASRLGIGR 84
Cdd:COG4604 2 IEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVaTTPSRELAKRLAILR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 sfqQTSAF-ARLTVFDnlrcaaLHA----PAERrrwwNRLREsasIDLAA-ARVLHDVGLDTRRDTPAGELSYAE-QRAL 157
Cdd:COG4604 82 ---QENHInSRLTVRE------LVAfgrfPYSK----GRLTA---EDREIiDEAIAYLDLEDLADRYLDELSGGQrQRAF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 dlgIA--LASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDA 233
Cdd:COG4604 146 ---IAmvLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRrlADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEE 222
|
.
gi 1900544068 234 I 234
Cdd:COG4604 223 I 223
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
15-248 |
1.04e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 100.74 E-value: 1.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTSAFAR 94
Cdd:PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLRcaalhAPAERRRWWNRLRESASidlaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:PRK10895 93 LSVYDNLM-----AVLQIRDDLSAEQREDR----ANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 175 PTAG---MSRAQAARMIALIRATTQGrtVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYLGEG 248
Cdd:PRK10895 164 PFAGvdpISVIDIKRIIEHLRDSGLG--VLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGED 238
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
6-234 |
1.07e-25 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 100.84 E-value: 1.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAS-RLGIGR 84
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKlRRKVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDNLRCAALH------APAERRrwwnrlresasidlaAARVLHDVGLDTRRDTPAGELSYAE-QRAl 157
Cdd:COG1126 82 VFQQFNLFPHLTVLENVTLAPIKvkkmskAEAEER---------------AMELLERVGLADKADAYPAQLSGGQqQRV- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 dlGIA--LASGARTLLLDEPTagmsraqAA---RMI----ALIRA-TTQGRTVLMIEHDMdavfGFAE----RITVLVRG 223
Cdd:COG1126 146 --AIAraLAMEPKVMLFDEPT-------SAldpELVgevlDVMRDlAKEGMTMVVVTHEM----GFARevadRVVFMDGG 212
|
250
....*....|.
gi 1900544068 224 AVVATGAPDAI 234
Cdd:COG1126 213 RIVEEGPPEEF 223
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
10-229 |
1.11e-25 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 99.98 E-value: 1.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELrGRGPVVASRlgIGRSFQQT 89
Cdd:cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-QKNIEALRR--IGALIEAP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHApaerrrwwnRLRESAsIDlaaaRVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGART 169
Cdd:cd03268 82 GFYPNLTARENLRLLARLL---------GIRKKR-ID----EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 170 LLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03268 148 LILDEPTNGLDPDGIKELRELILSlRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
14-244 |
1.27e-25 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 101.00 E-value: 1.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG-RGPVVASRLGIGRsfQQTS-A 91
Cdd:PRK13548 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADwSPAELARRRAVLP--QHSSlS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 92 FArLTVFDNLRCAALHAPAERRRwwnrlresasIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA------S 165
Cdd:PRK13548 89 FP-FTVEEVVAMGRAPHGLSRAE----------DDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAA 243
Cdd:PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARqlAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRV 237
|
.
gi 1900544068 244 Y 244
Cdd:PRK13548 238 Y 238
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
6-234 |
1.55e-25 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 100.45 E-value: 1.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGA-QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvVASRLGIGR 84
Cdd:cd03295 1 IEFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-VELRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDN--LRCAALHAPAERRRwwNRLREsasidlaaarVLHDVGLD--TRRDTPAGELSYAEQRALDLG 160
Cdd:cd03295 80 VIQQIGLFPHMTVEENiaLVPKLLKWPKEKIR--ERADE----------LLALVGLDpaEFADRYPHELSGGQQQRVGVA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 161 IALASGARTLLLDEPTAG---MSRAQAARMIALIRATTqGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:cd03295 148 RALAADPPLLLMDEPFGAldpITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
25-229 |
1.57e-25 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 99.49 E-value: 1.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 25 DLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLGIGRSFQQTSAFARLTVFDNL--- 101
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSMLFQENNLFAHLTVEQNVglg 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 102 RCAALHAPAERRRwwnrlresaSIDLAAARVLHDvGLDTRRdtpAGELSYAEQRALDLGIALASGARTLLLDEPTAGMSR 181
Cdd:cd03298 95 LSPGLKLTAEDRQ---------AIEVALARVGLA-GLEKRL---PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1900544068 182 AQAARMIALIRAT--TQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03298 162 ALRAEMLDLVLDLhaETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
16-236 |
1.60e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 104.45 E-value: 1.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG-RGPVVASRLG-IGrsfqQTSAFA 93
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQIAwVP----QNPYLF 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLRCAALHAPAERRRWWnrlresasidLAAARVLHDV-----GLdtrrDTPAGE----LSYAEQRALDLGIALA 164
Cdd:COG4988 424 AGTIRENLRLGRPDASDEELEAA----------LEAAGLDEFVaalpdGL----DTPLGEggrgLSGGQAQRLALARALL 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:COG4988 490 RDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALL-AQADRILVLDDGRIVEQGTHEELLA 560
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
20-229 |
1.84e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.59 E-value: 1.84e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRlGIGRSFQQTSAFARlTVFD 99
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYG-TLRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALHAPAERRRwwnRLRESASIDLAAARvlHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAGM 179
Cdd:cd03245 97 NITLGAPLADDERIL---RAAELAGVTDFVNK--HPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1900544068 180 SRAQAARMIALIRATTQGRTVLMIEHDMdAVFGFAERITVLVRGAVVATG 229
Cdd:cd03245 172 DMNSEERLKERLRQLLGDKTLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-229 |
1.99e-25 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 99.28 E-value: 1.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRvvlhgVELRGRGPVVASRLGIGRS 85
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-----VLFDGKPLDIAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLR-CAALHA--PAERRRWWNRLRESasidlaaarvlhdVGLDTRRDTPAGELSYAEQRALDLGIA 162
Cdd:cd03269 76 PEERGLYPKMKVIDQLVyLAQLKGlkKEEARRRIDEWLER-------------LELSEYANKRVEELSKGNQQKVQFIAA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 163 LASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRElARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-214 |
3.25e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 98.76 E-value: 3.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAS-RLGIGR 84
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINElRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDNLrcaaLHAPAERRrwwnRLRESASIDLaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:cd03262 81 VFQQFNLFPHLTVLENI----TLAPIKVK----GMSKAEAEER-ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMdavfGFA 214
Cdd:cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEeGMTMVVVTHEM----GFA 198
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
14-236 |
1.31e-24 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 98.54 E-value: 1.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL--RGRGpVVASRLGIGRSFQQTSA 91
Cdd:PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLdySKRG-LLALRQQVATVFQDPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 92 FARLTVFDNLRCAALH----APAERRRwwnrlRESASIDLAAARVLhdvgldtrRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:PRK13638 89 QIFYTDIDSDIAFSLRnlgvPEAEITR-----RVDEALTLVDAQHF--------RHQPIQCLSHGQKKRVAIAGALVLQA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALI-RATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIrRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
6-234 |
1.67e-24 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 99.84 E-value: 1.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRgpVVASRLGIGRS 85
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTN--LPPRERRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDN----LRCAALHAPAERRRwwnrlresasidlaAARVLHDVGLD---TRRdtPAgELSYAEQRALD 158
Cdd:COG1118 81 FQHYALFPHMTVAENiafgLRVRPPSKAEIRAR--------------VEELLELVQLEglaDRY--PS-QLSGGQRQRVA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 159 LGIALASGARTLLLDEPTAGMSRAQAARMIALIRAT--TQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG1118 144 LARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLhdELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
11-246 |
2.03e-24 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 97.26 E-value: 2.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 11 VVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTS 90
Cdd:PRK11614 11 VSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 91 AFARLTVFDNLRCAALHapAERRRWWNRLresasidlaaARVlHDV--GLDTRRDTPAGELSYAEQRALDLGIALASGAR 168
Cdd:PRK11614 91 VFSRMTVEENLAMGGFF--AERDQFQERI----------KWV-YELfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 169 TLLLDEPTAGMSR---AQAARMIALIRAttQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYL 245
Cdd:PRK11614 158 LLLLDEPSLGLAPiiiQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYL 235
|
.
gi 1900544068 246 G 246
Cdd:PRK11614 236 G 236
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
20-208 |
2.08e-24 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 95.95 E-value: 2.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR-GRGPVVASRLGIGRSFQ--QTSAFARlT 96
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDySRKGLLERRQRVGLVFQdpDDQLFAA-D 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRCAALH---APAERRRwwnRLRESasidlaaarvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLD 173
Cdd:TIGR01166 86 VDQDVAFGPLNlglSEAEVER---RVREA----------LTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152
|
170 180 190
....*....|....*....|....*....|....*.
gi 1900544068 174 EPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMD 208
Cdd:TIGR01166 153 EPTAGLDPAGREQMLAILRRlRAEGMTVVISTHDVD 188
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
5-234 |
4.07e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 98.75 E-value: 4.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGR 84
Cdd:PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSafARLTVFDNL----RCAALHApaerrrwwnrlREsasIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLG 160
Cdd:PRK13536 121 QFDNLD--LEFTVRENLlvfgRYFGMST-----------RE---IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLA 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 161 IALASGARTLLLDEPTAGMSrAQAARMI--ALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13536 185 RALINDPQLLILDEPTTGLD-PHARHLIweRLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
14-210 |
4.25e-24 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 95.38 E-value: 4.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGvelRGRGPVVASRLGIGRSFQqtsafa 93
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG---GARVAYVPQRSEVPDSLP------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 rLTVFDnlrCAALHAPAeRRRWWNRLRESASIDLAAArvLHDVGLDTRRDTPAGELSYAE-QRALdLGIALASGARTLLL 172
Cdd:NF040873 72 -LTVRD---LVAMGRWA-RRGLWRRLTRDDRAAVDDA--LERVGLADLAGRQLGELSGGQrQRAL-LAQGLAQEADLLLL 143
|
170 180 190
....*....|....*....|....*....|....*....
gi 1900544068 173 DEPTAGMSRAQAARMIALI-RATTQGRTVLMIEHDMDAV 210
Cdd:NF040873 144 DEPTTGLDAESRERIIALLaEEHARGATVVVVTHDLELV 182
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
10-228 |
6.95e-24 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 99.62 E-value: 6.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGaTRPT---RGRVVLHGVELRGRGPVVASRLGIGRSF 86
Cdd:PRK13549 10 NITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHgtyEGEIIFEGEELQASNIRDTERAGIAIIH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFARLTVFDNLRCAALHAPAERRRWwnrlresASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASG 166
Cdd:PRK13549 89 QELALVKELSVLENIFLGNEITPGGIMDY-------DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 167 ARTLLLDEPTAGMSRAQAARMIALIR-ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:PRK13549 162 ARLLILDEPTASLTESETAVLLDIIRdLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
10-241 |
1.79e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 95.95 E-value: 1.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELrgrGPVVASRlgIG-----R 84
Cdd:COG4152 6 GLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL---DPEDRRR--IGylpeeR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFqqtsaFARLTVFDNLR-CAALH----APAERR--RWWNRLresasidlaaarvlhdvGLDTRRDTPAGELSYAEQRAL 157
Cdd:COG4152 81 GL-----YPKMKVGEQLVyLARLKglskAEAKRRadEWLERL-----------------GLGDRANKKVEELSKGNQQKV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:COG4152 139 QLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRElAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRR 218
|
....*
gi 1900544068 237 DSRVR 241
Cdd:COG4152 219 QFGRN 223
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
6-229 |
1.83e-23 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 94.24 E-value: 1.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvASRlGIGRS 85
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDR-DIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRcaalhAPAERRRwwnrlRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALAS 165
Cdd:cd03301 78 FQNYALYPHMTVYDNIA-----FGLKLRK-----VPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQrlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
14-176 |
2.58e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.83 E-value: 2.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVvlhgvelrgrgpVVASRLGIGRSFQQTSAFA 93
Cdd:COG0488 7 SFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV------------SIPKGLRIGYLPQEPPLDD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNL-------------RCAALHAPAERRRWWNRLRE-SASIDLA--------AARVLHDVGLDTR-RDTPAGELS 150
Cdd:COG0488 75 DLTVLDTVldgdaelraleaeLEELEAKLAEPDEDLERLAElQEEFEALggweaearAEEILSGLGFPEEdLDRPVSELS 154
|
170 180
....*....|....*....|....*.
gi 1900544068 151 YAEQRALDLGIALASGARTLLLDEPT 176
Cdd:COG0488 155 GGWRRRVALARALLSEPDLLLLDEPT 180
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
21-229 |
2.97e-23 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 93.51 E-value: 2.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIA---AGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVelrgrgPVVASRLG---------IGRSFQQ 88
Cdd:cd03297 10 LPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT------VLFDSRKKinlppqqrkIGLVFQQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 89 TSAFARLTVFDNLRCAA-LHAPAERrrwwnRLRESASIDLaaarvlhdVGLDTRRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:cd03297 84 YALFPHLNVRENLAFGLkRKRNRED-----RISVDELLDL--------LGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKnlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
19-234 |
3.23e-23 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 94.38 E-value: 3.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRvvlhgVELRGRgpvVASRLGIGRSFQqtsafARLTVF 98
Cdd:COG1134 40 WALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGR-----VEVNGR---VSALLELGAGFH-----PELTGR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DN--LRCAAL-HAPAERRRwwnrlRESASIDLAaarvlhdvGLDTRRDTPAGELSyAEQRA-LDLGIALASGARTLLLDE 174
Cdd:COG1134 107 ENiyLNGRLLgLSRKEIDE-----KFDEIVEFA--------ELGDFIDQPVKTYS-SGMRArLAFAVATAVDPDILLVDE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 175 PTAGMSRA-QA---ARMIALIRattQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG1134 173 VLAVGDAAfQKkclARIRELRE---SGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEV 233
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
5-220 |
6.60e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 96.97 E-value: 6.60e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRF-GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGrGPVVASRLGIG 83
Cdd:TIGR02857 321 SLEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD-ADADSWRDQIA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQQTSAFARlTVFDNLRCAALHAPAERRRwwNRLRESASIDLAAARVLhdvGLDTRRDTPAGELSYAEQRALDLGIAL 163
Cdd:TIGR02857 400 WVPQHPFLFAG-TIAENIRLARPDASDAEIR--EALERAGLDEFVAALPQ---GLDTPIGEGGAGLSGGQAQRLALARAF 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDmDAVFGFAERITVL 220
Cdd:TIGR02857 474 LRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR-LALAALADRIVVL 529
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
8-231 |
6.97e-23 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 97.39 E-value: 6.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 8 LLGVVQRFGAQTVlDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVasRLGIGRSFQ 87
Cdd:TIGR01257 934 LVKIFEPSGRPAV-DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV--RQSLGMCPQ 1010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 QTSAFARLTVFDNLrcaALHAPAERRRWwnrlrESASIDLAAarVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:TIGR01257 1011 HNILFHHLTVAEHI---LFYAQLKGRSW-----EEAQLEMEA--MLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
21-234 |
8.59e-23 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 93.37 E-value: 8.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATrPTRGRVVLHGVELRGRGPVVASRLgigRSF--QQTSAFARLTVF 98
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARH---RAYlsQQQSPPFAMPVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLrcaALHAPAERRrwwnrlreSASIDLAAARVLHDVGLDTRRDTPAGELSYAE-QRALDLGI------ALASGARTLL 171
Cdd:COG4138 88 QYL---ALHQPAGAS--------SEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEwQRVRLAAVllqvwpTINPEGQLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 172 LDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG4138 157 LDEPMNSLDVAQQAALDRLLRElCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEV 220
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
19-229 |
1.02e-22 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 92.60 E-value: 1.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRvvlhgVELRGRgpvVASRLGIGRSFQqtsafARLTVF 98
Cdd:cd03220 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT-----VTVRGR---VSSLLGLGGGFN-----PELTGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DN--LRCAAL-HAPAERRRwwnrlRESASIDLAaarvlhdvGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEP 175
Cdd:cd03220 103 ENiyLNGRLLgLSRKEIDE-----KIDEIIEFS--------ELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 176 TAGMSRAQAARMIALIRATT-QGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03220 170 LAVGDAAFQEKCQRRLRELLkQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
5-234 |
1.02e-22 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 94.75 E-value: 1.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvASRlGIGR 84
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPP--KDR-NIAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDN----LRCAALhAPAERRRwwnRLREsasidlaAARVLhdvGLDTRRDTPAGELSYAE-QR-Ald 158
Cdd:COG3839 80 VFQSYALYPHMTVYENiafpLKLRKV-PKAEIDR---RVRE-------AAELL---GLEDLLDRKPKQLSGGQrQRvA-- 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 159 LGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG3839 144 LGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRrlGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPEEL 221
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-234 |
1.22e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 94.10 E-value: 1.22e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRL 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 GIGRSFQQTSafARLTVFDNLRCAAlhapaerrRWWNrlRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLG 160
Cdd:PRK13537 83 GVVPQFDNLD--PDFTVRENLLVFG--------RYFG--LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 161 IALASGARTLLLDEPTAGMSrAQAARMI--ALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13537 151 RALVNDPDVLVLDEPTTGLD-PQARHLMweRLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-249 |
1.57e-22 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 94.91 E-value: 1.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLgIGRS 85
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRCAalhapaeRRRWWNRLRESASIDLAAA-RVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:PRK09536 83 PQDTSLSFEFDVRQVVEMG-------RTPHRSRFDTWTETDRAAVeRAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAA 243
Cdd:PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVDdGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAA 235
|
....*.
gi 1900544068 244 YLGEGA 249
Cdd:PRK09536 236 FDARTA 241
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
20-246 |
1.78e-22 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 92.01 E-value: 1.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLGIGRSFQQTSAFARLTVFD 99
Cdd:cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYVPQNYALFPHMTVYK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALHAPAERRRWWNRLRESASiDLAAARVLHdvgldtrRDtPAgELSYAEQRALDLGIALASGARTLLLDEPTAGM 179
Cdd:cd03299 91 NIAYGLKKRKVDKKEIERKVLEIAE-MLGIDHLLN-------RK-PE-TLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 180 SRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI--RADSRVRAAYLG 246
Cdd:cd03299 161 DVRTKEKLREELKKIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVfkKPKNEFVAEFLG 231
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
20-245 |
1.93e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 92.83 E-value: 1.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR-GRGPVVASRLGIGRSFQQT--SAFARlT 96
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKyDKKSLLEVRKTVGIVFQNPddQLFAP-T 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRCAALHAPAERRRWWNRLRESasidlaaarvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEA----------LKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 177 AGMSRAQAARMIALI-RATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSR-VRAAYL 245
Cdd:PRK13639 166 SGLDPMGASQIMKLLyDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIEtIRKANL 236
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
15-234 |
1.97e-22 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 92.38 E-value: 1.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP-VVASRLGI---------GR 84
Cdd:PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSrQLARRLALlpqhhltpeGI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARlTVFDNLrcaalhapaerrrwWNRL--RESASIDLAaarvLHDVGLDTRRDTPAGELSYAE-QRALdLGI 161
Cdd:PRK11231 92 TVRELVAYGR-SPWLSL--------------WGRLsaEDNARVNQA----MEQTRINHLADRRLTDLSGGQrQRAF-LAM 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 162 ALASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRElNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
21-245 |
3.60e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 92.11 E-value: 3.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPV-VASRLGIgrSFQ--QTSAFArLTV 97
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSKVGL--VFQdpDDQVFS-STV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLRCAALHAPAERRRWWNRLRESasidlaaarvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTA 177
Cdd:PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEA----------LKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 178 GMS-RAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYL 245
Cdd:PRK13647 168 YLDpRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGL 236
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
11-234 |
5.29e-22 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 90.92 E-value: 5.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 11 VVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAS-RLGIGRSFQQT 89
Cdd:PRK09493 7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLiRQEAGMVFQQF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAALHAPAERRRWWNRLresasidlaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGART 169
Cdd:PRK09493 87 YLFPHLTALENVMFGPLRVRGASKEEAEKQ---------ARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 170 LLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMdavfGFAE----RITVLVRGAVVATGAPDAI 234
Cdd:PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDlAEEGMTMVIVTHEI----GFAEkvasRLIFIDKGRIAEDGDPQVL 223
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
20-234 |
9.45e-22 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 91.89 E-value: 9.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRP----TRGRVVLHGVELRGRGPVVASRLgIGRS----FQ--QT 89
Cdd:COG4170 22 AVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSPRERRKI-IGREiamiFQepSS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLrCAALHAPAERRRWWNRLRESASIdlaAARVLHDVGL----DTRRDTPAgELSYAEQRALDLGIALAS 165
Cdd:COG4170 101 CLDPSAKIGDQL-IEAIPSWTFKGKWWQRFKWRKKR---AIELLHRVGIkdhkDIMNSYPH-ELTEGECQKVMIAMAIAN 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 166 GARTLLLDEPTAGM---SRAQAARMIALIrATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG4170 176 QPRLLIADEPTNAMestTQAQIFRLLARL-NQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQI 246
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
20-232 |
1.02e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 89.98 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRgPVVASRLGIGRSFQQTSAFARlTVFD 99
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI-SRKSLRSMIGVVLQDTFLFSG-TIME 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALHAPAERrrwWNRLRESASIDLAAARVLHdvGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAGM 179
Cdd:cd03254 96 NIRLGRPNATDEE---VIEAAKEAGAHDFIMKLPN--GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 180 SRAQAARMIALIRATTQGRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAPD 232
Cdd:cd03254 171 DTETEKLIQEALEKLMKGRTSIIIAHRLSTI-KNADKILVLDDGKIIEEGTHD 222
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
27-232 |
1.54e-21 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 89.99 E-value: 1.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 27 SIAAGERHALIGPNGAGKSTLFGVIAGATrPTRGRVVLHGVELRGrgpVVASRLGIGRSF---QQTSAFArLTVFDNLrc 103
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEA---WSAAELARHRAYlsqQQTPPFA-MPVFQYL-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 104 aALHAPAerrrwwnrLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAE-QR----ALDLGI--ALASGARTLLLDEPT 176
Cdd:PRK03695 91 -TLHQPD--------KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEwQRvrlaAVVLQVwpDINPAGQLLLLDEPM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 177 AGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPD 232
Cdd:PRK03695 162 NSLDVAQQAALDRLLSElCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
6-230 |
3.08e-21 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 90.63 E-value: 3.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQ----TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR--GRGPVVASR 79
Cdd:PRK11153 2 IELKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalSEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 80 LGIGRSFQQTSAFARLTVFDNlrcAALhaPAERRRWwnrlrESASIDLAAARVLHDVGLDTRRDT-PAgELSYAE-QRal 157
Cdd:PRK11153 82 RQIGMIFQHFNLLSSRTVFDN---VAL--PLELAGT-----PKAEIKARVTELLELVGLSDKADRyPA-QLSGGQkQR-- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 dLGIA--LASGARTLLLDEPTAgmsraqaarmiALIRATTQ-------------GRTVLMIEHDMDAVFGFAERITVLVR 222
Cdd:PRK11153 149 -VAIAraLASNPKVLLCDEATS-----------ALDPATTRsilellkdinrelGLTIVLITHEMDVVKRICDRVAVIDA 216
|
....*...
gi 1900544068 223 GAVVATGA 230
Cdd:PRK11153 217 GRLVEQGT 224
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
16-206 |
4.66e-21 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 91.65 E-value: 4.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLgIGRSFQQTSAFARl 95
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSVCAQDAHLFDT- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAALHAPAERRRWwnRLRESASIDLAAARvlhDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEP 175
Cdd:TIGR02868 424 TVRENLRLARPDATDEELWA--ALERVGLADWLRAL---PDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 498
|
170 180 190
....*....|....*....|....*....|.
gi 1900544068 176 TAGMSRAQAARMIALIRATTQGRTVLMIEHD 206
Cdd:TIGR02868 499 TEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
16-229 |
4.88e-21 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 91.42 E-value: 4.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVE--------LRGRGPVVASRLGIgrsfq 87
Cdd:PRK11160 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPiadyseaaLRQAISVVSQRVHL----- 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 qtsaFARlTVFDNLRCAALHAPAERrrwwnrLREsasidlaaarVLHDVGLDTRRDTPAG----------ELSYAEQRAL 157
Cdd:PRK11160 426 ----FSA-TLRDNLLLAAPNASDEA------LIE----------VLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRL 484
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFaERITVLVRGAVVATG 229
Cdd:PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQG 555
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
21-237 |
8.78e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 90.63 E-value: 8.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRV-VLHG---VELRGRGPVVASRLG--IGRSFQQTSAFAR 94
Cdd:TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGdewVDMTKPGPDGRGRAKryIGILHQEYDLYPH 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLRCA-ALHAPAE--RRRwwnrlresasidlaAARVLHDVGLDTRR-----DTPAGELSYAEQRALDLGIALASG 166
Cdd:TIGR03269 380 RTVLDNLTEAiGLELPDElaRMK--------------AVITLKMVGFDEEKaeeilDKYPDELSEGERHRVALAQVLIKE 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 167 ARTLLLDEPTAGM---SRAQAARMIALIRATTqGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:TIGR03269 446 PRIVILDEPTGTMdpiTKVDVTHSILKAREEM-EQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
16-205 |
1.12e-20 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 86.26 E-value: 1.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-RGRGPVVASRLGIGrsfQQTSAFAR 94
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaEQRDEPHENILYLG---HLPGLKPE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLrcaalhapaerrRWWNRLRESASIDLAAArvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:TIGR01189 88 LSALENL------------HFWAAIHGGAQRTIEDA--LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDE 153
|
170 180 190
....*....|....*....|....*....|..
gi 1900544068 175 PTAGMSRAQAARMIALIRATTQ-GRTVLMIEH 205
Cdd:TIGR01189 154 PTTALDKAGVALLAGLLRAHLArGGIVLLTTH 185
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
15-230 |
1.29e-20 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 87.76 E-value: 1.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLF----GVIAGATRP-TRGRVVLHGVELRGR--GPVVASRLGIGRSFQ 87
Cdd:PRK09984 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLrhlsGLITGDKSAgSHIELLGRTVQREGRlaRDIRKSRANTGYIFQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 QTSAFARLTVFDNLRCAALHAPAERR---RWWNRLRESasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:PRK09984 94 QFNLVNRLSVLENVLIGALGSTPFWRtcfSWFTREQKQ-----RALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGA 230
Cdd:PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQndGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
16-205 |
1.80e-20 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 86.01 E-value: 1.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-RGRGPVVASRLGIGrsfQQTSAFAR 94
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLdFQRDSIARGLLYLG---HAPGIKTT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLrcaalhapaerrRWWNRLRESASIDLAaarvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:cd03231 88 LSVLENL------------RFWHADHSDEQVEEA----LARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151
|
170 180 190
....*....|....*....|....*....|..
gi 1900544068 175 PTAGMSRAQAARMIALIRA-TTQGRTVLMIEH 205
Cdd:cd03231 152 PTTALDKAGVARFAEAMAGhCARGGMVVLTTH 183
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
16-220 |
2.65e-20 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 84.74 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLgIGRSFQQTSAFARl 95
Cdd:cd03228 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IAYVPQDPFLFSG- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLrcaaLHApAERRRwwnrlresasidLAAARvlhdvgldtrrdtpagelsyaeqraldlgiALASGARTLLLDEP 175
Cdd:cd03228 91 TIRENI----LSG-GQRQR------------IAIAR------------------------------ALLRDPPILILDEA 123
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1900544068 176 TAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVfGFAERITVL 220
Cdd:cd03228 124 TSALDPETEALILEALRALAKGKTVIVIAHRLSTI-RDADRIIVL 167
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
12-250 |
2.68e-20 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 89.31 E-value: 2.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 12 VQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIG-----Rsf 86
Cdd:COG1129 259 VEGLSVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGIAyvpedR-- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFARLTVFDNLRCAALHAPAeRRRWWNRLRESAsidlAAARVLHDVGLDTR-RDTPAGELSya-eQRALdLGIALA 164
Cdd:COG1129 337 KGEGLVLDLSIRENITLASLDRLS-RGGLLDRRRERA----LAEEYIKRLRIKTPsPEQPVGNLSggnqQKVV-LAKWLA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 165 SGARTLLLDEPTAGM---SRAQAARMIAliRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVR 241
Cdd:COG1129 411 TDPKVLILDEPTRGIdvgAKAEIYRLIR--ELAAEGKAVIVISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA 488
|
....*....
gi 1900544068 242 AAYLGEGAT 250
Cdd:COG1129 489 AATGGAAAA 497
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
15-246 |
3.18e-20 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 88.35 E-value: 3.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVvasRLGIGRSFQQTSAFAR 94
Cdd:PRK11607 29 FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY---QRPINMMFQSYALFPH 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLrcaALHAPAERrrwwnrlRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:PRK11607 106 MTVEQNI---AFGLKQDK-------LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 175 PTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI--RADSRVRAAYLG 246
Cdd:PRK11607 176 PMGALDKKLRDRMQLEVVDILErvGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIyeHPTTRYSAEFIG 251
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
21-240 |
4.21e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 86.83 E-value: 4.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVvlhgveLRGRGPVVASRLG-------IGRSFQQ-TSAF 92
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI------LFDGKPIDYSRKGlmklresVGMVFQDpDNQL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARLTVFDNLRCAALHAPAERRRWWNRLResasidlaaaRVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLL 172
Cdd:PRK13636 96 FSASVYQDVSFGAVNLKLPEDEVRKRVD----------NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 173 DEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRV 240
Cdd:PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEM 235
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
25-246 |
5.21e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 85.40 E-value: 5.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 25 DLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLGIGRSFQQTSAFARLTVFDNLrCA 104
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSMLFQENNLFSHLTVAQNI-GL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 105 ALHaPAerrrwwnrLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAE-QRAldlgiALasgAR-------TLLLDEPT 176
Cdd:PRK10771 95 GLN-PG--------LKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQrQRV-----AL---ARclvreqpILLLDEPF 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 177 AGMSRAQAARMIALIRATTQGR--TVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYLG 246
Cdd:PRK10771 158 SALDPALRQEMLTLVSQVCQERqlTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLG 229
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
24-249 |
6.03e-20 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 87.08 E-value: 6.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 24 VDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVV---ASRLGIGRSFQQTSAFARLTVFDN 100
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIflpPHRRRIGYVFQEARLFPHLSVRGN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LRCAALHAPAERRRwwnrlresasidLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAGMS 180
Cdd:COG4148 98 LLYGRKRAPRAERR------------ISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 181 RAQAARMIALI-RATTQGRT-VLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYLGEGA 249
Cdd:COG4148 166 LARKAEILPYLeRLRDELDIpILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGEEA 236
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
4-237 |
1.04e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 85.19 E-value: 1.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 4 NAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG-------RGPVV 76
Cdd:PRK11264 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTarslsqqKGLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 77 ASRLGIGRSFQQTSAFARLTVFDNLRCAALHAPAERRrwwnrlreSASIDLAAArVLHDVGLDTRRDTPAGELSYAEQRA 156
Cdd:PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK--------EEATARARE-LLAKVGLAGKETSYPRRLSGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 157 LDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIR 235
Cdd:PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQeKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
..
gi 1900544068 236 AD 237
Cdd:PRK11264 233 AD 234
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
10-237 |
2.50e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 86.42 E-value: 2.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGaTRPT---RGRVVLHGVELRGRGPVVASRLGIGRSF 86
Cdd:TIGR02633 6 GIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKASNIRDTERAGIVIIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFARLTVFDN--------LRCAALHAPAERRRWWNRLREsasidlaaarvlhdVGLDTRRDT-PAGELSYAEQRAL 157
Cdd:TIGR02633 85 QELTLVPELSVAENiflgneitLPGGRMAYNAMYLRAKNLLRE--------------LQLDADNVTrPVGDYGGGQQQLV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRA 236
Cdd:TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAhGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSE 230
|
.
gi 1900544068 237 D 237
Cdd:TIGR02633 231 D 231
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
20-229 |
2.60e-19 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 83.19 E-value: 2.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRgRGPvVASRLGIGRSFQQTSAFARLTVFD 99
Cdd:cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV-KEP-AEARRRLGFVSDSTGLYDRLTARE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLR-CAALHApAERRRWWNRLRESASIdlaaarvlhdVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAG 178
Cdd:cd03266 98 NLEyFAGLYG-LKGDELTARLEELADR----------LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 179 MSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03266 167 LDVMATRALREFIRQlRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-230 |
3.50e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 83.42 E-value: 3.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 4 NAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATR-----PTRGRVVLHGVELRgRGPVVAS 78
Cdd:PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQDIF-KMDVIEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 79 RLGIGRSFQQTSAFARLTVFDNLrcaALHAPAER-----RRWWNRLRESasidLAAARVLHDVglDTRRDTPAGELSYAE 153
Cdd:PRK14247 81 RRRVQMVFQIPNPIPNLSIFENV---ALGLKLNRlvkskKELQERVRWA----LEKAQLWDEV--KDRLDAPAGKLSGGQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 154 QRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGA 230
Cdd:PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGP 228
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
10-228 |
4.49e-19 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 85.61 E-value: 4.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGaTRPT---RGRVVLHGVELRGRGPVVASRLGIGRSF 86
Cdd:NF040905 6 GITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHgsyEGEILFDGEVCRFKDIRDSEALGIVIIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFARLTVFDNLRCAAlhapaERRRW----WNRLREsasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIA 162
Cdd:NF040905 85 QELALIPYLSIAENIFLGN-----ERAKRgvidWNETNR------RARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 163 LASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:NF040905 154 LSKDVKLLILDEPTAALNEEDSAALLDLLLElKAQGITSIIISHKLNEIRRVADSITVLRDGRTIET 220
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-247 |
4.77e-19 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 84.77 E-value: 4.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpvVASRl 80
Cdd:PRK11432 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS--IQQR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 GIGRSFQQTSAFARLTVFDN----LRcaALHAPAERRRwwNRLRES-ASIDLAaarvlhdvGLDTRRdtpAGELSYAEQR 155
Cdd:PRK11432 79 DICMVFQSYALFPHMSLGENvgygLK--MLGVPKEERK--QRVKEAlELVDLA--------GFEDRY---VDQISGGQQQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 156 ALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDA 233
Cdd:PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQqfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223
|
250
....*....|....*.
gi 1900544068 234 I--RADSRVRAAYLGE 247
Cdd:PRK11432 224 LyrQPASRFMASFMGD 239
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
5-247 |
4.98e-19 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 84.75 E-value: 4.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGrgpVVASRLGIGR 84
Cdd:PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR---LHARDRKVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDNLRCAALHAPaeRRRWWNRlresASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLP--RRERPNA----AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 165 SGARTLLLDEPTAGMSrAQaARMiALIRATTQGR-----TVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD-- 237
Cdd:PRK10851 153 VEPQILLLDEPFGALD-AQ-VRK-ELRRWLRQLHeelkfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREpa 229
|
250
....*....|
gi 1900544068 238 SRVRAAYLGE 247
Cdd:PRK10851 230 TRFVLEFMGE 239
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
19-229 |
9.57e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 82.00 E-value: 9.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGI--GrsfQQTSAFARLT 96
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVvfG---QKTQLWWDLP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRCAALHAPAERRRWWNRLRESASIdLAAARVLhdvgldtrrDTPAGELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSEL-LDLEELL---------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 177 AGMSRAQAARMIALIRATTQGR--TVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03267 182 IGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
16-205 |
1.36e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.07 E-value: 1.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVElrGRGPVVASRLG-IG-RSFQQTSafa 93
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD--IDDPDVAEACHyLGhRNAMKPA--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 rLTVFDNLrcaalhapaerrRWWNRLRESASIDLAAArvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLD 173
Cdd:PRK13539 88 -LTVAENL------------EFWAAFLGGEELDIAAA--LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152
|
170 180 190
....*....|....*....|....*....|...
gi 1900544068 174 EPTAGMSRAQAARMIALIRA-TTQGRTVLMIEH 205
Cdd:PRK13539 153 EPTAALDAAAVALFAELIRAhLAQGGIVIAATH 185
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
20-232 |
1.80e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 80.65 E-value: 1.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG--ATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTSAFARLTV 97
Cdd:cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGhpKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLRcaalhapaerrrwwnrlresasiDLaaarvlhDVGldtrrdtpageLSYAEQRALDLGIALASGARTLLLDEPTA 177
Cdd:cd03217 95 ADFLR-----------------------YV-------NEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDS 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 178 GM---SRAQAARMIALIRatTQGRTVLMIEHDMD-AVFGFAERITVLVRGAVVATGAPD 232
Cdd:cd03217 134 GLdidALRLVAEVINKLR--EEGKSVLIITHYQRlLDYIKPDRVHVLYDGRIVKSGDKE 190
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
16-232 |
2.70e-18 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 83.68 E-value: 2.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP-VVASRLGIgrSFQQTSAFAR 94
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLeSLRRQIGV--VPQDTFLFSG 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 lTVFDNLRCAALHAPAErrrwwnRLRESAsidlAAARVLHDV-----GLdtrrDTPAGE----LSYAE-QRaldLGIA-- 162
Cdd:COG1132 429 -TIRENIRYGRPDATDE------EVEEAA----KAAQAHEFIealpdGY----DTVVGErgvnLSGGQrQR---IAIAra 490
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 163 LASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPD 232
Cdd:COG1132 491 LLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGTHE 559
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
19-232 |
4.53e-18 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 80.50 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG--ATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTSAFARLT 96
Cdd:COG0396 14 EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpKYEVTSGSILLDGEDILELSPDERARAGIFLAFQYPVEIPGVS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRcAALHAPAE----RRRWWNRLRESASidlaaarvlhDVGLDTrrdtpagelSYAEqRALDLG----------IA 162
Cdd:COG0396 94 VSNFLR-TALNARRGeelsAREFLKLLKEKMK----------ELGLDE---------DFLD-RYVNEGfsggekkrneIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 163 --------LAsgartlLLDEPTAGMSrAQAARMIALI--RATTQGRTVLMIEH-----DMDAvfgfAERITVLVRGAVVA 227
Cdd:COG0396 153 qmlllepkLA------ILDETDSGLD-IDALRIVAEGvnKLRSPDRGILIITHyqrilDYIK----PDFVHVLVDGRIVK 221
|
....*
gi 1900544068 228 TGAPD 232
Cdd:COG0396 222 SGGKE 226
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-176 |
7.01e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 82.42 E-value: 7.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVL-HGVElrgrgpvvasrlgIGr 84
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLgETVK-------------IG- 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SF-QQTSAF-ARLTVFDNLrcaalhapaerRRWWNRLRESASIDLAAA------RVlhdvgldtrrDTPAGELSYAEQRA 156
Cdd:COG0488 382 YFdQHQEELdPDKTVLDEL-----------RDGAPGGTEQEVRGYLGRflfsgdDA----------FKPVGVLSGGEKAR 440
|
170 180
....*....|....*....|
gi 1900544068 157 LDLGIALASGARTLLLDEPT 176
Cdd:COG0488 441 LALAKLLLSPPNVLLLDEPT 460
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
6-238 |
7.59e-18 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 81.97 E-value: 7.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRS 85
Cdd:PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRCAALHAPAERRRWWNRLRESASidlaaaRVLHDVGLDTRRDTPAGELSYAEQRALDLGIALAS 165
Cdd:PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD------KLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADS 238
Cdd:PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRElKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS 232
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
17-231 |
1.86e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 79.32 E-value: 1.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 17 AQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAS-RLGIGRSFQ--QTSAFA 93
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDiRKKVGLVFQypEYQLFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RlTVFDNLRCAALHAPAERRRWWNRLRESASIdlaaarvlhdVGLD--TRRDTPAGELSYAEQRALDLGIALASGARTLL 171
Cdd:PRK13637 99 E-TIEKDIAFGPINLGLSEEEIENRVKRAMNI----------VGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 172 LDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:PRK13637 168 LDEPTAGLDPKGRDEILNKIKELHKeyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
16-234 |
2.69e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 79.08 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGvELRGRGPVVASRLGIGRSFQQTS-AFAR 94
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG-EPITKENIREVRKFVGLVFQNPDdQIFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLRCAALhapaerrrwwNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:PRK13652 94 PTVEQDIAFGPI----------NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 175 PTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13652 164 PTAGLDPQGVKELIDFLNDlpETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
14-231 |
2.90e-17 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 77.92 E-value: 2.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP-VVASRLGIgrSFQQTSAF 92
Cdd:cd03244 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLhDLRSRISI--IPQDPVLF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARlTVFDNLRCAALHAPAERrrwWNRLRESASIDLAAArvlHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLL 172
Cdd:cd03244 91 SG-TIRSNLDPFGEYSDEEL---WQALERVGLKEFVES---LPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 173 DEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFaERITVLVRGAVVATGAP 231
Cdd:cd03244 164 DEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS-DRILVLDKGRVVEFDSP 221
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
15-246 |
5.46e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 78.24 E-value: 5.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDgVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRV-----VLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:PRK13643 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVtvgdiVVSSTSKQKEIKPVRKKVGVVFQFPES 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDnlrcaALHAPAErrrwWNRLRESAsiDLAAARVLHDVGLDTR--RDTPAgELSYAEQRALDLGIALASGA 167
Cdd:PRK13643 96 QLFEETVLKD-----VAFGPQN----FGIPKEKA--EKIAAEKLEMVGLADEfwEKSPF-ELSGGQMRRVAIAGILAMEP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP-DAIRADSRVRAAYL 245
Cdd:PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQsGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPsDVFQEVDFLKAHEL 243
|
.
gi 1900544068 246 G 246
Cdd:PRK13643 244 G 244
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
18-229 |
9.06e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 75.43 E-value: 9.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRsfQQTSAFARlTV 97
Cdd:cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN--QRPYLFDT-TL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLrcAALHAPAERRRwwnrlresasidLAAARVLhdvgldtRRDTPagelsyaeqraldlgialasgarTLLLDEPTA 177
Cdd:cd03247 92 RNNL--GRRFSGGERQR------------LALARIL-------LQDAP-----------------------IVLLDEPTV 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 178 GMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFaERITVLVRGAVVATG 229
Cdd:cd03247 128 GLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
10-228 |
1.05e-16 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 77.03 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG--RGPVVASRLGIGRSFQ 87
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnRAQRKAFRRDIQMVFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 QT-SAF-ARLTVFDNLRCAALH----APAERRRwwnRLREsasidlaaarVLHDVGLD-TRRDTPAGELSYAEQRALDLG 160
Cdd:PRK10419 97 DSiSAVnPRKTVREIIREPLRHllslDKAERLA---RASE----------MLRAVDLDdSVLDKRPPQLSGGQLQRVCLA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 161 IALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQqfGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
6-245 |
1.33e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 76.37 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQT--VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRlGIG 83
Cdd:cd03252 1 ITFEHVRFRYKPDGpvILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR-QVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQQTSAFARlTVFDNLrcaALHAPAERRRwwnRLRESASidLAAArvlHDVGLDTRR--DTPAGE----LSYAEQRAL 157
Cdd:cd03252 80 VVLQENVLFNR-SIRDNI---ALADPGMSME---RVIEAAK--LAGA---HDFISELPEgyDTIVGEqgagLSGGQRQRI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAIrAD 237
Cdd:cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL-LA 225
|
....*...
gi 1900544068 238 SRVRAAYL 245
Cdd:cd03252 226 ENGLYAYL 233
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-234 |
2.65e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 75.78 E-value: 2.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR------GRGP 74
Cdd:PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdGQLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 75 VV-ASRLGIGRS-----FQQTSAFARLTVFDNLRCAALH----APAERRRwwnrlresasidlAAARVLHDVGLDTR-RD 143
Cdd:PRK10619 81 VAdKNQLRLLRTrltmvFQHFNLWSHMTVLENVMEAPIQvlglSKQEARE-------------RAVKYLAKVGIDERaQG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 144 TPAGELSYAEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVR 222
Cdd:PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 227
|
250
....*....|..
gi 1900544068 223 GAVVATGAPDAI 234
Cdd:PRK10619 228 GKIEEEGAPEQL 239
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
19-226 |
2.97e-16 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 74.51 E-value: 2.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRP--TRGRVVLHGVELRGRgpvvASRLGIGRSFQQTSAFARLT 96
Cdd:cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRPLDKR----SFRKIIGYVPQDDILHPTLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRCAAlhapaerrrwwnRLResasidlaaarvlhdvgldtrrdtpagELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:cd03213 99 VRETLMFAA------------KLR---------------------------GLSGGERKRVSIALELVSNPSLLFLDEPT 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 177 AGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDA-VFGFAERITVLVRGAVV 226
Cdd:cd03213 140 SGLDSSSALQVMSLLRRlADTGRTIICSIHQPSSeIFELFDKLLLLSQGRVI 191
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
3-225 |
3.97e-16 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 75.48 E-value: 3.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 3 GNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVvlhgveLRGRGPVVASRLGI 82
Cdd:PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL------LAGTAPLAEAREDT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 83 GRSFQQtsafARL----TVFDNLrcaalhAPAERRRWwnrlREsasidlAAARVLHDVGLDTR-RDTPAGeLSYAEQRAL 157
Cdd:PRK11247 84 RLMFQD----ARLlpwkKVIDNV------GLGLKGQW----RD------AALQALAAVGLADRaNEWPAA-LSGGQKQRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAV 225
Cdd:PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQqhGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
18-232 |
5.09e-16 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 74.60 E-value: 5.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG--ATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTSAFARL 95
Cdd:TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGhpSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRcAALHApaeRRRWwnrlRESASIDLAAARVLhdvgLDTRRDTPAGELSYAEqRALDLGIalaSGA-------- 167
Cdd:TIGR01978 93 SNLEFLR-SALNA---RRSA----RGEEPLDLLDFEKL----LKEKLALLDMDEEFLN-RSVNEGF---SGGekkrneil 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 168 -------RTLLLDEPTAGMSrAQAARMIA--LIRATTQGRTVLMIEHDM--------DAVFgfaeritVLVRGAVVATGA 230
Cdd:TIGR01978 157 qmallepKLAILDEIDSGLD-IDALKIVAegINRLREPDRSFLIITHYQrllnyikpDYVH-------VLLDGRIVKSGD 228
|
..
gi 1900544068 231 PD 232
Cdd:TIGR01978 229 VE 230
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
11-234 |
5.39e-16 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 74.99 E-value: 5.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 11 VVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG--RGPVVA-SRLGIGRSFQ 87
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAmsRKELRElRRKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 QTSAFARLTVFDN----LRCAALhAPAERRRwwnrlresasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIAL 163
Cdd:cd03294 110 SFALLPHRTVLENvafgLEVQGV-PRAEREE-------------RAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 164 ASGARTLLLDEPTAGMSraqaarmiALIRATTQ----------GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDA 233
Cdd:cd03294 176 AVDPDILLMDEAFSALD--------PLIRREMQdellrlqaelQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247
|
.
gi 1900544068 234 I 234
Cdd:cd03294 248 I 248
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-246 |
6.17e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 75.20 E-value: 6.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRG------PVvasRLGIGRSFQqtsaFAR 94
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTkdkyirPV---RKRIGMVFQ----FPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVF-DNLRCAALHAPAERRRWWNRLRESASidlaaaRVLHDVGL--DTRRDTPAgELSYAEQRALDLGIALASGARTLL 171
Cdd:PRK13646 96 SQLFeDTVEREIIFGPKNFKMNLDEVKNYAH------RLLMDLGFsrDVMSQSPF-QMSGGQMRKIAIVSILAMNPDIIV 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 172 LDEPTAGM---SRAQAARMIALIRaTTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI-RADSRVRAAYLG 246
Cdd:PRK13646 169 LDEPTAGLdpqSKRQVMRLLKSLQ-TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELfKDKKKLADWHIG 246
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
16-234 |
6.85e-16 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 75.61 E-value: 6.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGAT----RPTRGRVVLHGVELRGRGPVVASRLgIGRS----FQ 87
Cdd:PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTkdnwRVTADRMRFDDIDLLRLSPRERRKL-VGHNvsmiFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 Q-TSAFARLTVFDNLRCAALHAPAERRRWWNRL--RESASIDLaaarvLHDVGLDTRRDTPAG---ELSYAEQRALDLGI 161
Cdd:PRK15093 97 EpQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFgwRKRRAIEL-----LHRVGIKDHKDAMRSfpyELTEGECQKVMIAI 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 162 ALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK15093 172 ALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQnnNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-234 |
8.47e-16 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 75.75 E-value: 8.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGrgpVVASRL 80
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH---VPAENR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 GIGRSFQQTSAFARLTVFDN----LRCAALHApAERRRwwnRLREsasidlaAARVLHDVGLDTRRdtPAgELSYAEQRA 156
Cdd:PRK09452 87 HVNTVFQSYALFPHMTVFENvafgLRMQKTPA-AEITP---RVME-------ALRMVQLEEFAQRK--PH-QLSGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 157 LDLGIALASGARTLLLDEPTAGMS---RAQAARMI-ALIRatTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPD 232
Cdd:PRK09452 153 VAIARAVVNKPKVLLLDESLSALDyklRKQMQNELkALQR--KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
..
gi 1900544068 233 AI 234
Cdd:PRK09452 231 EI 232
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
12-225 |
8.97e-16 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 72.85 E-value: 8.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 12 VQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIG-----Rsf 86
Cdd:cd03215 7 VRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAyvpedR-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFARLTVFDNLRCAALhapaerrrwwnrlresasidlaaarvlhdvgldtrrdtpageLSYAEQRALDLGIALASG 166
Cdd:cd03215 85 KREGLVLDLSVAENIALSSL------------------------------------------LSGGNQQKVVLARWLARD 122
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 167 ARTLLLDEPTAGM---SRAQAARMIalIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAV 225
Cdd:cd03215 123 PRVLILDEPTRGVdvgAKAEIYRLI--RELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
18-234 |
8.99e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 74.31 E-value: 8.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGV------IAGATRPTRGRVVLHGVELRgRGPVVASRLGIGRSFQQTSA 91
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVlnrlieIYDSKIKVDGKVLYFGKDIF-QIDAIKLRKEVGMVFQQPNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 92 FARLTVFDNLRCAALHAPAERRRWWNRLRESASIDLAAARVLHDvgldtRRDTPAGELSYAEQRALDLGIALASGARTLL 171
Cdd:PRK14246 102 FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-----RLNSPASQLSGGQQQRLTIARALALKPKVLL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 172 LDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK14246 177 MDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
20-227 |
1.06e-15 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 75.92 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG---VELRGRGPVVASRLGIGRSFQQTSAFARLT 96
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGqdvATLDADALAQLRREHFGFIFQRYHLLSHLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 97 VFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:PRK10535 103 AAQNVEVPAVYAGLERKQRLLRAQE----------LLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 177 AGM-SRAQAARMIALIRATTQGRTVLMIEHDmDAVFGFAERITVLVRGAVVA 227
Cdd:PRK10535 173 GALdSHSGEEVMAILHQLRDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIVR 223
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-227 |
2.22e-15 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 74.95 E-value: 2.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 24 VDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGI-----GRSFQQTSAFArlTVF 98
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGImlcpeDRKAEGIIPVH--SVA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLRCAA--LHAPAerRRWWNRLRESASidlaAARVLHDVGLDTR-RDTPAGELSYAEQRALDLGIALASGARTLLLDEP 175
Cdd:PRK11288 350 DNINISArrHHLRA--GCLINNRWEAEN----ADRFIRSLNIKTPsREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 176 TAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVA 227
Cdd:PRK11288 424 TRGIDVGAKHEIYNVIYElAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-229 |
2.83e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.05 E-value: 2.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQqtsafarltVFDN 100
Cdd:TIGR01257 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD---------AIDD 2025
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LRCAALHApaerrRWWNRLR--ESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAG 178
Cdd:TIGR01257 2026 LLTGREHL-----YLYARLRgvPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTG 2100
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 179 MSrAQAARMI--ALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:TIGR01257 2101 MD-PQARRMLwnTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
21-246 |
4.35e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 72.71 E-value: 4.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQ-TSAFARLTVFD 99
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNpETQFVGRTVEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALH---APAERRRwwnrlresaSIDLAAArvlhDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:PRK13644 98 DLAFGPENlclPPIEIRK---------RVDRALA----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 177 AGMSRAQAARMIALI-RATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAIRADSRVRaaYLG 246
Cdd:PRK13644 165 SMLDPDSGIAVLERIkKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQ--TLG 232
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
10-228 |
8.83e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 73.23 E-value: 8.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQT 89
Cdd:PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLrcaalhapaerrrWWNRL-RESASIDLA-----AARVLHDVGLDTRRDTPAGELSYAEQRALDLGIAL 163
Cdd:PRK10982 83 NLVLQRSVMDNM-------------WLGRYpTKGMFVDQDkmyrdTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:PRK10982 150 SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKlKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
15-223 |
1.28e-14 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 70.67 E-value: 1.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVE---LRGRgPVVASRLGIGRSFQQTSA 91
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDitrLKNR-EVPFLRRQIGMIFQDHHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 92 FARLTVFDNLRCAALHAPAERRRWwnRLRESASIDlaaarvlhDVG-LDTRRDTPAgELSYAEQRALDLGIALASGARTL 170
Cdd:PRK10908 91 LMDRTVYDNVAIPLIIAGASGDDI--RRRVSAALD--------KVGlLDKAKNFPI-QLSGGEQQRVGIARAVVNKPAVL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 171 LLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRvGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
15-234 |
1.41e-14 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 71.17 E-value: 1.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-RGRGPVVASRLGIgrSFQQTSAFA 93
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIqHYASKEVARRIGL--LAQNATTPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNL-RCAALHAPAERRrwWNRLRESasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLL 172
Cdd:PRK10253 95 DITVQELVaRGRYPHQPLFTR--WRKEDEE-----AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 173 DEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK10253 168 DEPTTWLDISHQIDLLELLSElnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
4-241 |
1.77e-14 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 70.95 E-value: 1.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 4 NAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG--VELRGRGPVVASRLG 81
Cdd:PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGenIPAMSRSRLYTVRKR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 82 IGRSFQQTSAFARLTVFDN----LRcAALHAPAErrrwwnRLRESASIDLAAarvlhdVGLDTRRDTPAGELSYAEQRAL 157
Cdd:PRK11831 86 MSMLFQSGALFTDMNVFDNvaypLR-EHTQLPAP------LLHSTVMMKLEA------VGLRGAAKLMPSELSGGMARRA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIR 235
Cdd:PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSalGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232
|
....*...
gi 1900544068 236 A--DSRVR 241
Cdd:PRK11831 233 AnpDPRVR 240
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
11-246 |
1.87e-14 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 71.99 E-value: 1.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 11 VVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVV---ASRLGIGRSFQ 87
Cdd:PRK10070 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAElreVRRKKIAMVFQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 QTSAFARLTVFDNLRCAALHA--PAERRRWwnrlresasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALAS 165
Cdd:PRK10070 114 SFALMPHMTVLDNTAFGMELAgiNAEERRE------------KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 166 GARTLLLDEPTAGMS---RAQAARMIALIRATTQgRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI---RADSR 239
Cdd:PRK10070 182 NPDILLMDEAFSALDpliRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIlnnPANDY 260
|
....*..
gi 1900544068 240 VRAAYLG 246
Cdd:PRK10070 261 VRTFFRG 267
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
19-232 |
2.77e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 71.60 E-value: 2.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIG-----RsfQQTSAFA 93
Cdd:COG3845 272 PALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAyipedR--LGRGLVP 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLRCAALHAPAERRRWWnrLRESASIDLAAARV-LHDVgldtrR----DTPAGELSYAEQRALDLGIALASGAR 168
Cdd:COG3845 350 DMSVAENLILGRYRRPPFSRGGF--LDRKAIRAFAEELIeEFDV-----RtpgpDTPARSLSGGNQQKVILARELSRDPK 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 169 TLLLDEPTAGMSrAQAARMI--ALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPD 232
Cdd:COG3845 423 LLIAAQPTRGLD-VGAIEFIhqRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAA 487
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
21-234 |
2.78e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 70.54 E-value: 2.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGP---VVASRLGIGRSFQqtsaFARLTV 97
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnkdIKQIRKKVGLVFQ----FPESQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDN--LRCAAL--------HAPAERRRwwnrlRESasidlaaarvLHDVGLDTR-RDTPAGELSYAEQRALDLGIALASG 166
Cdd:PRK13649 99 FEEtvLKDVAFgpqnfgvsQEEAEALA-----REK----------LALVGISESlFEKNPFELSGGQMRRVAIAGILAME 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 167 ARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQsGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
20-229 |
2.81e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 69.95 E-value: 2.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpvVAS-RLGIGRSFQQTSAFARlTVF 98
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT--LASlRRQIGLVSQDVFLFND-TVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLRCAALHAPAERRRwwnrlresasidlAAARV--LHDV--GLDTRRDTPAGE----LSYAEQRALDLGIALASGARTL 170
Cdd:cd03251 94 ENIAYGRPGATREEVE-------------EAARAanAHEFimELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDPPIL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 171 LLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATG 229
Cdd:cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERG 218
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
14-211 |
4.37e-14 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 69.73 E-value: 4.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpvvASRlgiGRSFQQTSAFA 93
Cdd:PRK11248 10 DYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG---AER---GVVFQNEGLLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLRCAALHAPAERRRwwnrlRESasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLD 173
Cdd:PRK11248 84 WRNVQDNVAFGLQLAGVEKMQ-----RLE-----IAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1900544068 174 EPTAGM---SRAQAARMIALIRATTqGRTVLMIEHDM-DAVF 211
Cdd:PRK11248 154 EPFGALdafTREQMQTLLLKLWQET-GKQVLLITHDIeEAVF 194
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
22-205 |
5.23e-14 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 68.68 E-value: 5.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 22 DGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-RGRGPVVASRLGIGrsfQQTSAFARLTVFDN 100
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIrRQRDEYHQDLLYLG---HQPGIKTELTALEN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LR-CAALHAPAERRRWWNRLREsasidlaaarvlhdVGLDTRRDTPAGELSYAEQRAldlgIALA----SGARTLLLDEP 175
Cdd:PRK13538 95 LRfYQRLHGPGDDEALWEALAQ--------------VGLAGFEDVPVRQLSAGQQRR----VALArlwlTRAPLWILDEP 156
|
170 180 190
....*....|....*....|....*....|.
gi 1900544068 176 TAGMSRAQAARMIALIRA-TTQGRTVLMIEH 205
Cdd:PRK13538 157 FTAIDKQGVARLEALLAQhAEQGGMVILTTH 187
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
20-229 |
1.16e-13 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 68.07 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRP---TRGRVVLHGVELRgrgpvvasrlgiGRSFQQTSAFAR-- 94
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRK------------PDQFQKCVAYVRqd 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 ------LTVFDNLR-CAALHAPaerrrwwNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGA 167
Cdd:cd03234 90 dillpgLTVRETLTyTAILRLP-------RKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRAT-TQGRTVLM-IEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLaRRNRIVILtIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
18-247 |
1.19e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 69.87 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATrPTRGRVVLHGVELRgRGPVVASRLGIGRSFQQTSAFARlTV 97
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELR-ELDPESWRKHLSWVGQNPQLPHG-TL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLRCAALHAPAERrrwWNRLRESASIDLAAARVLHdvGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTA 177
Cdd:PRK11174 440 RDNVLLGNPDASDEQ---LQQALENAWVSEFLPLLPQ--GLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTA 514
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 178 GM-SRAQAARMIALIRAtTQGRTVLMIEHDMDAVFGFaERITVLVRGAVVATGAPDAIRADSRVRAAYLGE 247
Cdd:PRK11174 515 SLdAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
20-217 |
1.88e-13 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 67.46 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLH----GVELRGRGP--VVASRlgigrsfQQT---- 89
Cdd:COG4778 26 VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggWVDLAQASPreILALR-------RRTigyv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFarLTVFDnlRCAALHAPAERRRWWNRLRESASIDlaAARVLHDVGLDTRR-DTPAGELSYAEQRALDLGIALASGAR 168
Cdd:COG4778 99 SQF--LRVIP--RVSALDVVAEPLLERGVDREEARAR--ARELLARLNLPERLwDLPPATFSGGEQQRVNIARGFIADPP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1900544068 169 TLLLDEPTAGMSRAQAARMIALIR-ATTQGRTVLMIEHDMDAVFGFAERI 217
Cdd:COG4778 173 LLLLDEPTASLDAANRAVVVELIEeAKARGTAIIGIFHDEEVREAVADRV 222
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
19-237 |
2.91e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 67.95 E-value: 2.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRV----VLHGVELRGRGPVVAS-----------RLGIG 83
Cdd:PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITNPyskkiknfkelRRRVS 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQqtsaFARLTVF-DNLRCAALHAPAERRRWWNRLRESAsidlaaARVLHDVGLD-TRRDTPAGELSYAEQRALDLGI 161
Cdd:PRK13631 120 MVFQ----FPEYQLFkDTIEKDIMFGPVALGVKKSEAKKLA------KFYLNKMGLDdSYLERSPFGLSGGQKRRVAIAG 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 162 ALASGARTLLLDEPTAGMSRAQAARMIALIR-ATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:PRK13631 190 ILAIQPEILIFDEPTAGLDPKGEHEMMQLILdAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
18-246 |
3.05e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 67.60 E-value: 3.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRG--RGPVVASrlgIGRSFQQTSAFARL 95
Cdd:PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQalQKNLVAY---VPQSEEVDWSFPVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAALHAPAERRRwwnRLRESASIDLAAARVlhdvGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEP 175
Cdd:PRK15056 97 VEDVVMMGRYGHMGWLRRA---KKRDRQIVTAALARV----DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEP 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 176 TAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAErITVLVRGAVVATGAPDAIRADSRVRAAYLG 246
Cdd:PRK15056 170 FTGVDVKTEARIISLLRElRDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTFTAENLELAFSG 240
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
19-234 |
3.26e-13 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 67.77 E-value: 3.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRP---TRGRVVLHGVELRG---------RGPVVAsrlGIgrsF 86
Cdd:COG0444 19 KAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKlsekelrkiRGREIQ---MI---F 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QqtSAFA----RLTVFDNLR-CAALHAPAERRRWWNRlresasidlaAARVLHDVGLDTRRDT----PaGELSYAE-QRA 156
Cdd:COG0444 93 Q--DPMTslnpVMTVGDQIAePLRIHGGLSKAEARER----------AIELLERVGLPDPERRldryP-HELSGGMrQRV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 157 LdLGIALASGARTLLLDEPTAGM---SRAQAARMIALIRATTqGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDA 233
Cdd:COG0444 160 M-IARALALEPKLLIADEPTTALdvtIQAQILNLLKDLQREL-GLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 237
|
.
gi 1900544068 234 I 234
Cdd:COG0444 238 L 238
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
21-236 |
3.28e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 67.80 E-value: 3.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRV-VLhgvelrGRGPvvasrlgigrsFQQTSAFAR----- 94
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVrVL------GYVP-----------FKRRKEFARrigvv 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 ----------LTVFDNLRcaaLHA------PAERRRWWNRLREsasidlaaarVLhdvGLDTRRDTPAGELSYAEQ-RAl 157
Cdd:COG4586 101 fgqrsqlwwdLPAIDSFR---LLKaiyripDAEYKKRLDELVE----------LL---DLGELLDTPVRQLSLGQRmRC- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIR 235
Cdd:COG4586 164 ELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEynRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELK 243
|
.
gi 1900544068 236 A 236
Cdd:COG4586 244 E 244
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-234 |
3.49e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 67.35 E-value: 3.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 1 MNGNAIALLGVVQRF--GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRgRGPVVAS 78
Cdd:PRK13635 1 MKEEIIRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLS-EETVWDV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 79 RLGIGRSFQQ-TSAFARLTVFDNLRCAALHAPAERRRWWNRLRESasidlaaarvLHDVGLDTRRDTPAGELSYAE-QRA 156
Cdd:PRK13635 80 RRQVGMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA----------LRQVGMEDFLNREPHRLSGGQkQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 157 LDLGIaLASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13635 150 AIAGV-LALQPDIIILDEATSMLDPRGRREVLETVRqlKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
21-229 |
4.87e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 68.06 E-value: 4.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpvVAS-RLGIGRSFQQTSAFARlTVFD 99
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT--RASlRRNIAVVFQDAGLFNR-SIED 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRC-------AALHAPAERrrwwnrlreSASIDLAAARvlhDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLL 172
Cdd:PRK13657 428 NIRVgrpdatdEEMRAAAER---------AQAHDFIERK---PDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 173 DEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATG 229
Cdd:PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESG 551
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
21-250 |
1.30e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 66.01 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR---GRGPVVASRLGIGRSFQ--QTSAFARl 95
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetGNKNLKKLRKKVSLVFQfpEAQLFEN- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAALHAPAERrrwwnrlrESASIdlAAARVLHDVGLDTR-RDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:PRK13641 102 TVLKDVEFGPKNFGFSE--------DEAKE--KALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 175 PTAGMS-RAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSR-VRAAYLGEGAT 250
Cdd:PRK13641 172 PAAGLDpEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEwLKKHYLDEPAT 249
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
16-234 |
1.44e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 66.70 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLG--IGRSFQQTSAFA 93
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDR---EELGrhIGYLPQDVELFD 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RlTVFDNLrcaalhapaerrrwwNRLRE--SASIdLAAARV--LHDV------GLDTRRDTPAGELSYAE-QRaldlgIA 162
Cdd:COG4618 420 G-TIAENI---------------ARFGDadPEKV-VAAAKLagVHEMilrlpdGYDTRIGEGGARLSGGQrQR-----IG 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 163 LasgARTL-------LLDEPTAGM-SRAQAARMIALIRATTQGRTVLMIEHDMdAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG4618 478 L---ARALygdprlvVLDEPNSNLdDEGEAALAAAIRALKARGATVVVITHRP-SLLAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
19-206 |
1.82e-12 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 64.80 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-----RGRGPVVASRLGIgrSFQQTSAFA 93
Cdd:PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhqmdeEARAKLRAKHVGF--VFQSFMLIP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLRCAALHAPAERRRWWNRlresasidlaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLD 173
Cdd:PRK10584 102 TLNALENVELPALLRGESSRQSRNG----------AKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD 171
|
170 180 190
....*....|....*....|....*....|....*
gi 1900544068 174 EPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHD 206
Cdd:PRK10584 172 EPTGNLDRQTGDKIADLLFSLNRehGTTLILVTHD 206
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-234 |
2.10e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 65.12 E-value: 2.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRG-----PVVASR 79
Cdd:PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSifnyrDVLEFR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 80 LGIGRSFQQTSAFArLTVFDN-LRCAALHAPAERRRWWNrlresasidLAAARvLHDVGL-----DTRRDTPAgELSYAE 153
Cdd:PRK14271 101 RRVGMLFQRPNPFP-MSIMDNvLAGVRAHKLVPRKEFRG---------VAQAR-LTEVGLwdavkDRLSDSPF-RLSGGQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 154 QRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDA 233
Cdd:PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248
|
.
gi 1900544068 234 I 234
Cdd:PRK14271 249 L 249
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-224 |
2.74e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 64.35 E-value: 2.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 2 NGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvVASRLG 81
Cdd:PRK10247 4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EIYRQQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 82 IGRSFQQTSAFARlTVFDNLRCAalhapaerrrWwnRLRESASIDLAAARVLHDVGL-DTRRDTPAGELSYAEQRALDLG 160
Cdd:PRK10247 83 VSYCAQTPTLFGD-TVYDNLIFP----------W--QIRNQQPDPAIFLDDLERFALpDTILTKNIAELSGGEKQRISLI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 161 IALASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGFAERITVLVRGA 224
Cdd:PRK10247 150 RNLQFMPKVLLLDEITSALDESNKHNVNEIIHryVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
14-65 |
2.81e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.47 E-value: 2.81e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLH 65
Cdd:cd03221 9 TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
15-176 |
2.95e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 65.74 E-value: 2.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLhgvelrgRGPVVASRL-------------- 80
Cdd:PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY-------EQDLIVARLqqdpprnvegtvyd 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 81 ----GIG------RSFQQTSafaRLTVFD----NL-RCAALHAPAERRRWW---NRLREsasidlaaarVLHDVGLDTrr 142
Cdd:PRK11147 86 fvaeGIEeqaeylKRYHDIS---HLVETDpsekNLnELAKLQEQLDHHNLWqleNRINE----------VLAQLGLDP-- 150
|
170 180 190
....*....|....*....|....*....|....
gi 1900544068 143 DTPAGELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPT 184
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
24-238 |
3.27e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 64.66 E-value: 3.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 24 VDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLhgvelrGRGPVVAS-----------RLGIGRSFQQTSAF 92
Cdd:PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI------GERVITAGkknkklkplrkKVGIVFQFPEHQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARlTV-----FDNLRCAALHAPAERRrwwnrlresasidlaAARVLHDVGLDTR-RDTPAGELSYAEQRALDLGIALASG 166
Cdd:PRK13634 100 EE-TVekdicFGPMNFGVSEEDAKQK---------------AREMIELVGLPEElLARSPFELSGGQMRRVAIAGVLAME 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 167 ARTLLLDEPTAGMS---RAQAARMIALIRaTTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADS 238
Cdd:PRK13634 164 PEVLVLDEPTAGLDpkgRKEMMEMFYKLH-KEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
6-231 |
3.43e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 65.05 E-value: 3.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvaSRLGIGRS 85
Cdd:PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLRCAALHAPAERRRWWNRLREsasidlaAARVLHDVGLDTRRdtPAgELSYAEQRALDLGIALAS 165
Cdd:PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQ-------VAEVLQLAHLLDRK--PK-ALSGGQRQRVAIGRTLVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARM-IALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:PRK11000 151 EPSVFLLDEPLSNLDAALRVQMrIEISRLHKRlGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
10-239 |
4.58e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 63.79 E-value: 4.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRvvlhgVELRGRGPVVASRLGIG----RS 85
Cdd:PRK11701 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE-----VHYRMRDGQLRDLYALSeaerRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTS-AFARLTVFDNLRcAALHAPA---ER-----RRWWNRLREsasidlAAARVLHDVGLDTRR--DTPAGELSYAEQ 154
Cdd:PRK11701 86 LLRTEwGFVHQHPRDGLR-MQVSAGGnigERlmavgARHYGDIRA------TAGDWLERVEIDAARidDLPTTFSGGMQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 155 RaldLGIA--LASGARTLLLDEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGA 230
Cdd:PRK11701 159 R---LQIArnLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlvRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235
|
....*....
gi 1900544068 231 PDAIRADSR 239
Cdd:PRK11701 236 TDQVLDDPQ 244
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
31-232 |
4.82e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 65.07 E-value: 4.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 31 GERHALIGPNGAGKSTLFGVIAGatRPTRGRVVLHGVELRGRgPVVAsrlgigRSFQQTSAFAR--------LTVFDNLR 102
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAF--RSPKGVKGSGSVLLNGM-PIDA------KEMRAISAYVQqddlfiptLTVREHLM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 103 CAAL-----HAPAERRRwwNRLREsasidlaaarVLHDVGLDTRRDTPAGE------LSYAEQRALDLGIALASGARTLL 171
Cdd:TIGR00955 122 FQAHlrmprRVTKKEKR--ERVDE----------VLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLF 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 172 LDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDA-VFGFAERITVLVRGAVVATGAPD 232
Cdd:TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGLAQkGKTIICTIHQPSSeLFELFDKIILMAEGRVAYLGSPD 252
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
17-229 |
6.88e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 63.57 E-value: 6.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 17 AQTVLDGVDLSIAAGERHALIGPNGAGKS----TLFGVIAGATRPTRGRVVLHGVELRG---RGPVVASRLGIGRSfqqt 89
Cdd:PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVAPcalRGRKIATIMQNPRS---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 safarltVFDNLRCAALHApaerrRWWNRLRESASIDLAAARVLHDVGLDTRRDTP---AGELSYAEQRALDLGIALASG 166
Cdd:PRK10418 91 -------AFNPLHTMHTHA-----RETCLALGKPADDATLTAALEAVGLENAARVLklyPFEMSGGMLQRMMIALALLCE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 167 ARTLLLDEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
17-231 |
7.39e-12 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 63.69 E-value: 7.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 17 AQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG------ATRPTR--GRVVLHGVELRGRGPVVASRLGIGRSFQQ 88
Cdd:PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdltgggAPRGARvtGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 89 TSAFA-------RLTVFDNLRCAALHAPAERRRWWNRLRESASIDLAAARVLHDVGLDTRRDTPAGELSyaeqrALDLGI 161
Cdd:PRK13547 93 QPAFAfsareivLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA-----QLWPPH 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 162 ALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARdwNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
20-87 |
9.04e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 63.12 E-value: 9.04e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG--ATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQ 87
Cdd:CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESILDLEPEERAHLGIFLAFQ 91
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
16-70 |
1.20e-11 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 61.46 E-value: 1.20e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR 70
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
7-234 |
1.20e-11 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 62.88 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 7 ALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRlGIGRSF 86
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVAYLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFARLTVFDNLRCAAL--HAPAERRRWWNRLRESASIDLaaarvlhdVGLDTRRDTPAGELSYAE-QRALdLGIAL 163
Cdd:PRK10575 92 QQLPAAEGMTVRELVAIGRYpwHGALGRFGAADREKVEEAISL--------VGLKPLAHRLVDSLSGGErQRAW-IAMLV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRATTQGR--TVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERglTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
15-218 |
1.30e-11 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 62.49 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVI--AGATRP---TRGRVVLHGVELRG-RGPVVASRLGIGRSFQQ 88
Cdd:PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPevtITGSIVYNGHNIYSpRTDTVDLRKEIGMVFQQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 89 TSAFArLTVFDN----LRCAALHAPAerrrwwnRLRESASIDLAAARVLHDVGlDTRRDTPAGeLSYAEQRALDLGIALA 164
Cdd:PRK14239 95 PNPFP-MSIYENvvygLRLKGIKDKQ-------VLDEAVEKSLKGASIWDEVK-DRLHDSALG-LSGGQQQRVCIARVLA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAvfgfAERIT 218
Cdd:PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ----ASRIS 214
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-231 |
1.58e-11 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 61.66 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 6 IALLGVVQRFGAQ--TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELrGRGPVVASRLGIG 83
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI-STIPLEDLRSSLT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQQTSAFARlTVFDNLrcaalhapaerrrwwNRLRESASIDLAAARVLHDVGLDtrrdtpageLSYAEQRALDLGIAL 163
Cdd:cd03369 86 IIPQDPTLFSG-TIRSNL---------------DPFDEYSDEEIYGALRVSEGGLN---------LSQGQRQLLCLARAL 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAeRITVLVRGAVVATGAP 231
Cdd:cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYD-KILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
20-234 |
2.75e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 62.12 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRP---TRGRVVLHGVELrGRGPVVASRLGIGRSFQQ-TSAFARL 95
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDGITL-TAKTVWDIREKVGIVFQNpDNQFVGA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLrcaalhAPAERRRWWNRlRESASIdlaAARVLHDVG-LDTRRDTPAGELSYAEQRALDLGIaLASGARTLLLDE 174
Cdd:PRK13640 101 TVGDDV------AFGLENRAVPR-PEMIKI---VRDVLADVGmLDYIDSEPANLSGGQKQRVAIAGI-LAVEPKIIILDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 175 PTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13640 170 STSMLDPAGKEQILKLIRklKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEI 230
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
21-231 |
2.83e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 61.95 E-value: 2.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVE----LRGRGPVVASRLGIGRSFQ--QTSAFAR 94
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAipanLKKIKEVKRLRKEIGLVFQfpEYQLFQE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 lTVFDNLRCAALHAPAERRRWWNRLREsasidlaaarVLHDVGL--DTRRDTPAgELSYAEQRALDLGIALASGARTLLL 172
Cdd:PRK13645 107 -TIEKDIAFGPVNLGENKQEAYKKVPE----------LLKLVQLpeDYVKRSPF-ELSGGQKRRVALAGIIAMDGNTLVL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 173 DEPTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:PRK13645 175 DEPTGGLDPKGEEDFINLFERlnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-249 |
3.46e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 62.38 E-value: 3.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 24 VDLSIAAGERHALIGPNGAGKS----TLFGViagatRPTR-GRVVLHGVELRGRGPVVASRLGI---GRSFQQTSAFARL 95
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTelaeTLYGL-----RPARgGRIMLNGKEINALSTAQRLARGLvylPEDRQSSGLYLDA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLrCAALHapaERRRWW-NRLRESASIDlaaaRVLHDVGLD-TRRDTPAGELSYAEQRALDLGIALASGARTLLLD 173
Cdd:PRK15439 357 PLAWNV-CALTH---NRRGFWiKPARENAVLE----RYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 174 EPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAAYLGEGA 249
Cdd:PRK15439 429 EPTRGVDVSARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQA 505
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
18-243 |
5.05e-11 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 62.05 E-value: 5.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELR--------------GRGPVVasrlgIG 83
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVqydhhylhrqvalvGQEPVL-----FS 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQQTSAFA-RLTVFDNLRCAALHAPAerrrwwnrlresasidlaaarvlHD--VGLDTRRDTPAGE----LSYAEQRA 156
Cdd:TIGR00958 569 GSVRENIAYGlTDTPDEEIMAAAKAANA-----------------------HDfiMEFPNGYDTEVGEkgsqLSGGQKQR 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 157 LDLGIALASGARTLLLDEPTAGMSrAQAARMIALIRaTTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAIRA 236
Cdd:TIGR00958 626 IAIARALVRKPRVLILDEATSALD-AECEQLLQESR-SRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLME 702
|
....*..
gi 1900544068 237 DSRVRAA 243
Cdd:TIGR00958 703 DQGCYKH 709
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
18-232 |
5.09e-11 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 60.71 E-value: 5.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGrgpVVAS--RLGIGRSFQQTSAFARl 95
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE---VTLDslRRAIGVVPQDTVLFND- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAALHAPAERRRwwnrlresasidlAAARV--LHD--VGLDTRRDTPAGE----LSYAEQRALDLGIALASGA 167
Cdd:cd03253 90 TIGYNIRYGRPDATDEEVI-------------EAAKAaqIHDkiMRFPDGYDTIVGErglkLSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 168 RTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPD 232
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHE 220
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-223 |
5.35e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 62.43 E-value: 5.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGatRPTRGrVVLHGVELRGRGPVVAS-RLGIGRSFQQTSAFARLTVF 98
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTG-VITGGDRLVNGRPLDSSfQRSIGYVQQQDLHLPTSTVR 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLRCAAlhapaerrrwwnRLRESASIDLA-----AARVLHDVGLDTRRDT---PAGELSYAEQRA-LDLGIALASGART 169
Cdd:TIGR00956 855 ESLRFSA------------YLRQPKSVSKSekmeyVEEVIKLLEMESYADAvvgVPGEGLNVEQRKrLTIGVELVAKPKL 922
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 170 LL-LDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFgFAE--RITVLVRG 223
Cdd:TIGR00956 923 LLfLDEPTSGLDSQTAWSICKLMRKLADhGQAILCTIHQPSAIL-FEEfdRLLLLQKG 979
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
20-225 |
6.98e-11 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 60.18 E-value: 6.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG--------------VELRGRGPVVasrlgIGRS 85
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGkpisqyehkylhskVSLVGQEPVL-----FARS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTV-FDNLRCAALHAPAErrrwwNRLRESASidlaaarvlhdvGLDTRRDTPAGELSYAEQRALDLGIALA 164
Cdd:cd03248 104 LQDNIAYGLQSCsFECVKEAAQKAHAH-----SFISELAS------------GYDTEVGEKGSQLSGGQKQRVAIARALI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 165 SGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVfGFAERITVLVRGAV 225
Cdd:cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTV-ERADQILVLDGGRI 226
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-236 |
9.67e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 61.29 E-value: 9.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpvVASRLGIGR 84
Cdd:NF033858 266 AIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGD--IATRRRVGY 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 85 SFQQTSAFARLTVFDNLrcaALHA-----PAERrrwwnrlresasidlAAARV---LHDVGLDTRRDTPAGELSYA-EQR 155
Cdd:NF033858 344 MSQAFSLYGELTVRQNL---ELHArlfhlPAAE---------------IAARVaemLERFDLADVADALPDSLPLGiRQR 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 156 aLDLGIALASGARTLLLDEPTAGMSraQAAR------MIALIRatTQGRTVLMIEHDMDAvfgfAE---RITVLVRGAVV 226
Cdd:NF033858 406 -LSLAVAVIHKPELLILDEPTSGVD--PVARdmfwrlLIELSR--EDGVTIFISTHFMNE----AErcdRISLMHAGRVL 476
|
250
....*....|
gi 1900544068 227 ATGAPDAIRA 236
Cdd:NF033858 477 ASDTPAALVA 486
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
21-238 |
1.01e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 60.49 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpVVASRLGIGRSFQQ-TSAFARLTVFD 99
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN-VWNLRRKIGMVFQNpDNQFVGATVED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALHAPAERRRWWNRLRESasidLAAARVlhdvgLDTRRDTPAGELSYAEQRALDLGIaLASGARTLLLDEPTAGM 179
Cdd:PRK13642 102 DVAFGMENQGIPREEMIKRVDEA----LLAVNM-----LDFKTREPARLSGGQKQRVAVAGI-IALRPEIIILDESTSML 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 180 S---RAQAARMIALIRATTQgRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAPDAIRADS 238
Cdd:PRK13642 172 DptgRQEIMRVIHEIKEKYQ-LTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFATS 231
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
20-240 |
1.35e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 60.00 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRgRGPVVASRLGIGRSFQQ-TSAFARLTVF 98
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS-KENLKEIRKKIGIIFQNpDNQFIGATVE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLrcaalhAPAERRRWWNRLRESASIDLAAARvlhdVGLDTRRDTPAGELSYAE-QRaldLGIA--LASGARTLLLDEP 175
Cdd:PRK13632 103 DDI------AFGLENKKVPPKKMKDIIDDLAKK----VGMEDYLDKEPQNLSGGQkQR---VAIAsvLALNPEIIIFDES 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 176 TAgM----SRAQAARMIALIRATTQgRTVLMIEHDMDAVFgFAERITVLVRGAVVATGAPDAIRADSRV 240
Cdd:PRK13632 170 TS-MldpkGKREIKKIMVDLRKTRK-KTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEI 235
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
5-229 |
1.73e-10 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 59.26 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAS-----R 79
Cdd:PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKairelR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 80 LGIGRSFQQTSAFARLTVFDNL-----RCAAL---HAPAERRRWWNRLRESasiDLAAARVLHdvgldtrrdtpageLSY 151
Cdd:PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLieapcRVLGLskdQALARAEKLLERLRLK---PYADRFPLH--------------LSG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 152 AEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAEtGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-229 |
1.90e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 59.47 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTL---FGVIAGATRPTR--GRVVLHGVELRGRG-PVVASRLGIGRSFQQ 88
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNRLLELNEEARveGEVRLFGRNIYSPDvDPIEVRREVGMVFQY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 89 TSAFARLTVFDN----LRCAALHAPA----ERRRWwnRLRESAsidlaaarvLHDVGLDTRRDTPaGELSYAEQRALDLG 160
Cdd:PRK14267 94 PNPFPHLTIYDNvaigVKLNGLVKSKkeldERVEW--ALKKAA---------LWDEVKDRLNDYP-SNLSGGQRQRLVIA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 161 IALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
21-201 |
1.93e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 58.41 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGatRPTRGRVvlhgvelrgRGPVVASRLGIGRSFQQTSAFAR------ 94
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVI---------TGEILINGRPLDKNFQRSTGYVEqqdvhs 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 --LTVFDNLRCAALhapaerrrwwnrLResasidlaaarvlhdvgldtrrdtpagELSYAEQRALDLGIALASGARTLLL 172
Cdd:cd03232 92 pnLTVREALRFSAL------------LR---------------------------GLSVEQRKRLTIGVELAAKPSILFL 132
|
170 180 190
....*....|....*....|....*....|
gi 1900544068 173 DEPTAGM-SRAQAARMIALIRATTQGRTVL 201
Cdd:cd03232 133 DEPTSGLdSQAAYNIVRFLKKLADSGQAIL 162
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
15-207 |
2.56e-10 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 58.89 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTL-------FGVIAGATrpTRGRVVLHGVELRGRG-PVVASRLGIGRSF 86
Cdd:COG1117 21 YGDKQALKDINLDIPENKVTALIGPSGCGKSTLlrclnrmNDLIPGAR--VEGEILLDGEDIYDPDvDVVELRRRVGMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQTSAFArLTVFDN----LRcaaLHapaerrrwwnRLRESASIDLAAARVLHDVGL-----DtRRDTPAGELSYAEQRAL 157
Cdd:COG1117 99 QKPNPFP-KSIYDNvaygLR---LH----------GIKSKSELDEIVEESLRKAALwdevkD-RLKKSALGLSGGQQQRL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDM 207
Cdd:COG1117 164 CIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNM 213
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
10-208 |
4.72e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 57.66 E-value: 4.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGA--TRPTRGRVVLHGVELrGRGPVVASRLGIGRSFq 87
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAlkGTPVAGCVDVPDNQF-GREASLIDAIGRKGDF- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 88 qtsafarltvfdnlrcaalhapaerrrwwnrlresasidLAAARVLHDVGLDT----RRdtPAGELSYAEQRALDLGIAL 163
Cdd:COG2401 113 ---------------------------------------KDAVELLNAVGLSDavlwLR--RFKELSTGQKFRFRLALLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIR--ATTQGRTVLMIEHDMD 208
Cdd:COG2401 152 AERPKLLVIDEFCSHLDRQTAKRVARNLQklARRAGITLVVATHHYD 198
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-234 |
6.98e-10 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 57.82 E-value: 6.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 4 NAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGrVVLHGVELRgrgpvvasrlgIG 83
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNGKLR-----------IG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 84 RSFQQTS--AFARLTV--FDNLRCAALHA---PAERRrwwnrlresasidLAAARVLhdvgldtrrDTPAGELSYAE-QR 155
Cdd:PRK09544 71 YVPQKLYldTTLPLTVnrFLRLRPGTKKEdilPALKR-------------VQAGHLI---------DAPMQKLSGGEtQR 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 156 ALdLGIALASGARTLLLDEPTAGMS-RAQAA--RMIALIRaTTQGRTVLMIEHDMDAVFGFAERITVLvRGAVVATGAPD 232
Cdd:PRK09544 129 VL-LARALLNRPQLLVLDEPTQGVDvNGQVAlyDLIDQLR-RELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPE 205
|
..
gi 1900544068 233 AI 234
Cdd:PRK09544 206 VV 207
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
20-207 |
7.22e-10 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 57.52 E-value: 7.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL-----RGRGPVVASRLGIGRSFQQTsaFAR 94
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMsklssAAKAELRNQKLGFIYQFHHL--LPD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFDNLRCAALHAPAERRRWWNRLRESasidLAAarvlhdVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDE 174
Cdd:PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEM----LAA------VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE 171
|
170 180 190
....*....|....*....|....*....|....*
gi 1900544068 175 PTAGMSRAQAARMIALIRA--TTQGRTVLMIEHDM 207
Cdd:PRK11629 172 PTGNLDARNADSIFQLLGElnRLQGTAFLVVTHDL 206
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
13-234 |
8.08e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 58.54 E-value: 8.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 13 QRFGAQTVLDGVDLSIAAGERHALIGPNGAGKS----TLFGVIAGATRPTRGRVVLHGVEL-----------RGRgpvva 77
Cdd:COG4172 18 QGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLlglserelrriRGN----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 78 srlGIGRSFQQ--TSAFARLTVFDNLRCA-ALHAPAERRRWWNRLREsasidlaaarVLHDVGLD---TRRDTPAGELSY 151
Cdd:COG4172 93 ---RIAMIFQEpmTSLNPLHTIGKQIAEVlRLHRGLSGAAARARALE----------LLERVGIPdpeRRLDAYPHQLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 152 AE-QRALdLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVAT 228
Cdd:COG4172 160 GQrQRVM-IAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRelGMALLLITHDLGVVRRFADRVAVMRQGEIVEQ 238
|
....*.
gi 1900544068 229 GAPDAI 234
Cdd:COG4172 239 GPTAEL 244
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-62 |
1.09e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 57.98 E-value: 1.09e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 4 NAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRV 62
Cdd:PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
21-219 |
3.08e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.72 E-value: 3.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERH-----ALIGPNGAGKSTLFGVIAGATRPTRGrvvlhgvelrgrgpVVASRLGIGRSFQQTSAFARL 95
Cdd:COG1245 351 YGGFSLEVEGGEIRegevlGIVGPNGIGKTTFAKILAGVLKPDEG--------------EVDEDLKISYKPQYISPDYDG 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAAlhAPAERRRWWNrlresasidlaaARVLHDVGLDTRRDTPAGELSYAE-QRaldLGIA--LASGARTLLL 172
Cdd:COG1245 417 TVEEFLRSAN--TDDFGSSYYK------------TEIIKPLGLEKLLDKNVKDLSGGElQR---VAIAacLSRDADLYLL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 173 DEPTAGM---SRAQAARMIALIrATTQGRTVLMIEHD---MDAVfgfAERITV 219
Cdd:COG1245 480 DEPSAHLdveQRLAVAKAIRRF-AENRGKTAMVVDHDiylIDYI---SDRLMV 528
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
19-237 |
4.01e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 55.86 E-value: 4.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVL-----HGVELRGRGPVVASRLGIGRS-------- 85
Cdd:PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWifkdeKNKKKTKEKEKVLEKLVIQKTrfkkikki 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 ----------FQqtsaFARLTVFDN----------LRCAALHAPAERRrwwnrlresasidlaAARVLHDVGLDTR--RD 143
Cdd:PRK13651 101 keirrrvgvvFQ----FAEYQLFEQtiekdiifgpVSMGVSKEEAKKR---------------AAKYIELVGLDESylQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 144 TPAgELSYAEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALI-RATTQGRTVLMIEHDMDAVFGFAERITVLVR 222
Cdd:PRK13651 162 SPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFdNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240
|
250
....*....|....*
gi 1900544068 223 GAVVATGAPDAIRAD 237
Cdd:PRK13651 241 GKIIKDGDTYDILSD 255
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
2-223 |
4.22e-09 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 56.35 E-value: 4.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 2 NGNAIALLGV-VQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHgvelRGRGPVVASR- 79
Cdd:COG4178 359 EDGALALEDLtLRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARP----AGARVLFLPQr 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 80 --LGIGrsfqqtsafarltvfdNLRcAALHAPAERRRWwnrlresasIDLAAARVLHDVGLD---TRRDTPAG---ELSY 151
Cdd:COG4178 435 pyLPLG----------------TLR-EALLYPATAEAF---------SDAELREALEAVGLGhlaERLDEEADwdqVLSL 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 152 AEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDmDAVFGFAERITVLVRG 223
Cdd:COG4178 489 GEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLREELPGTTVISVGHR-STLAAFHDRVLELTGD 559
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
4-235 |
4.92e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 55.90 E-value: 4.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 4 NAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAG--KSTLFGVIAG---ATRPTR------GRVVLHgvelRGR 72
Cdd:NF000106 12 NAVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GpdaGRRPWRf*twcaNRRALR----RTI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 73 GPVVASRLGIGRSFQqtsafARLTVFDNLRCAALHAPAERRRWwNRLRESASIDLAAARVlhdvgldtrrdtpAGELSYA 152
Cdd:NF000106 88 G*HRPVR*GRRESFS-----GRENLYMIGR*LDLSRKDARARA-DELLERFSLTEAAGRA-------------AAKYSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 153 EQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:NF000106 149 MRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRdGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKV 228
|
....
gi 1900544068 232 DAIR 235
Cdd:NF000106 229 DELK 232
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-210 |
1.06e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 54.27 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRpTRGRVVLHG-VELRGRGpVVASRLGIGRSFQQTS-AF 92
Cdd:PRK14258 17 YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGrVEFFNQN-IYERRVNLNRLRRQVSmVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 AR-----LTVFDN----LRCAALHAPAErrrwWNRLRESAsidLAAARVLHDVglDTRRDTPAGELSYAEQRALDLGIAL 163
Cdd:PRK14258 95 PKpnlfpMSVYDNvaygVKIVGWRPKLE----IDDIVESA---LKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARAL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRATT--QGRTVLMIEHDMDAV 210
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlrSELTMVIVSHNLHQV 214
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
24-227 |
1.08e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 55.18 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 24 VDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIG---RSFQQTSAFARLTVFDN 100
Cdd:PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAyitESRRDNGFFPNFSIAQN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 LRCA------------ALHAPAERRRWWNRLRESASIDLAAArvlhdvgldtrrDTPAGELSYAEQRALDLGIALASGAR 168
Cdd:PRK09700 362 MAISrslkdggykgamGLFHEVDEQRTAENQRELLALKCHSV------------NQNITELSGGNQQKVLISKWLCCCPE 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 169 TLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVA 227
Cdd:PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQlADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
131-231 |
1.24e-08 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 54.16 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 131 RVLHDVGLD-TRRDTPAGELSYAEQRALDLGIALASGA--RTL-LLDEPTAGMSRAQAARMI-ALIRATTQGRTVLMIEH 205
Cdd:cd03271 151 QTLCDVGLGyIKLGQPATTLSGGEAQRIKLAKELSKRStgKTLyILDEPTTGLHFHDVKKLLeVLQRLVDKGNTVVVIEH 230
|
90 100 110
....*....|....*....|....*....|..
gi 1900544068 206 DMDaVFGFAERITVL-----VRGA-VVATGAP 231
Cdd:cd03271 231 NLD-VIKCADWIIDLgpeggDGGGqVVASGTP 261
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
18-223 |
1.53e-08 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 54.89 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGAtrpTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTSAFARLTV 97
Cdd:PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR---IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLR-CAALHAPaerrrwwNRLRESASIdLAAARVLHDVGLDTRRDTPAGE-----LSYAEQRALDLGIALASGARTLL 171
Cdd:PLN03211 158 RETLVfCSLLRLP-------KSLTKQEKI-LVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLI 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 172 LDEPTAGMSRAQAARMI-ALIRATTQGRTVLMIEHDMDA-VFGFAERITVLVRG 223
Cdd:PLN03211 230 LDEPTSGLDATAAYRLVlTLGSLAQKGKTIVTSMHQPSSrVYQMFDSVLVLSEG 283
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
18-87 |
1.67e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 53.64 E-value: 1.67e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGAT--RPTRGRVVLHGVELRGRGPVVASRLGIGRSFQ 87
Cdd:PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREdyEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQ 85
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
16-229 |
1.75e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 54.33 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 16 GAQTVLDGVDLSIAAGERHALIGPNGAGKST----LFGVIAgatrpTRGRVVLHGVEL--RGRGPVVASRLGIGRSFQQ- 88
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPLhnLNRRQLLPVRHRIQVVFQDp 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 89 TSAFarltvfdNLRCAALHAPAERRRWWNRLRESASIDLAAARVLHDVGLD--TRRDTPAgELSYAEQRALDLGIALASG 166
Cdd:PRK15134 372 NSSL-------NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDpeTRHRYPA-EFSGGQRQRIAIARALILK 443
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 167 ARTLLLDEPTAGMSRAQAARMIALIRATTQGRTV--LMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:PRK15134 444 PSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLayLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
5-232 |
2.13e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 54.36 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQ--TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPV-VASRLG 81
Cdd:PLN03130 1237 SIKFEDVVLRYRPElpPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMdLRKVLG 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 82 IgrsFQQTSAFARLTVFDNLRCAALHAPAErrrWWNRLrESASIDLAAARvlHDVGLDTRRdTPAGE-LSYAEQRALDLG 160
Cdd:PLN03130 1317 I---IPQAPVLFSGTVRFNLDPFNEHNDAD---LWESL-ERAHLKDVIRR--NSLGLDAEV-SEAGEnFSVGQRQLLSLA 1386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 161 IALASGARTLLLDEPTAgmsrAQAARMIALIRATTQGR----TVLMIEHDMDAVFGfAERITVLVRGAVVATGAPD 232
Cdd:PLN03130 1387 RALLRRSKILVLDEATA----AVDVRTDALIQKTIREEfkscTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPE 1457
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
18-232 |
2.25e-08 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 53.31 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRgRGPVVASRLGIGRSFQQTSAFARlTV 97
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR-DLNLRWLRSQIGLVSQEPVLFDG-TI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLRCAALHAPAERrrwwnrlresasiDLAAARV--LHD--VGLDTRRDTPAGE----LSYAE-QRaldlgIALASG-- 166
Cdd:cd03249 94 AENIRYGKPDATDEE-------------VEEAAKKanIHDfiMSLPDGYDTLVGErgsqLSGGQkQR-----IAIARAll 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 167 --ARTLLLDEPTAGMSrAQAARMI--ALIRAtTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPD 232
Cdd:cd03249 156 rnPKILLLDEATSALD-AESEKLVqeALDRA-MKGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHD 222
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
3-234 |
2.78e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.21 E-value: 2.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 3 GNAIALLGVVQRF--GAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASR- 79
Cdd:PLN03232 1232 RGSIKFEDVHLRYrpGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRv 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 80 LGIgrsFQQTSAFARLTVFDNLRCAALHAPAErrrWWNRLrESASIDLAAARvlHDVGLDTRRDTPAGELSYAEQRALDL 159
Cdd:PLN03232 1312 LSI---IPQSPVLFSGTVRFNIDPFSEHNDAD---LWEAL-ERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSL 1382
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 160 GIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAI 234
Cdd:PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
21-234 |
2.85e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 53.92 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATrPTRGRVVLHGVELRGRGPvvASRLGIGRSFQ---Q---TSAFAR 94
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGLSR--RALRPLRRRMQvvfQdpfGSLSPR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTVFD----NLRcaaLHAP----AERRRwwnrlresasidlAAARVLHDVGLDTR-RDTPAGELSYAE-QRaldLGIA-- 162
Cdd:COG4172 379 MTVGQiiaeGLR---VHGPglsaAERRA-------------RVAEALEEVGLDPAaRHRYPHEFSGGQrQR---IAIAra 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 163 LASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:COG4172 440 LILEPKLLVLDEPTSALDVSVQAQILDLLRDLQRehGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQV 513
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
19-234 |
3.12e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 53.17 E-value: 3.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGIGRSFQQTsafarltvf 98
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP--------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 99 DNLRCAA------------LHAPAERRRwwNRLRESasidlaaarvLHDVGLDTRRDTPAGELSYAE-QRALDLGIaLAS 165
Cdd:PRK13633 95 DNQIVATiveedvafgpenLGIPPEEIR--ERVDES----------LKKVGMYEYRRHAPHLLSGGQkQRVAIAGI-LAM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 166 GARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKkyGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
21-231 |
4.10e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 52.81 E-value: 4.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGpVVASRLGIGRSFQQ-TSAFARLTVFD 99
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN-VWDIRHKIGMVFQNpDNQFVGATVED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALHAPAERRRWWNRLRESASIdlaaarvlhdVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAGM 179
Cdd:PRK13650 102 DVAFGLENKGIPHEEMKERVNEALEL----------VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 180 SRAQAARMIALIRATTQ--GRTVLMIEHDMDAVfGFAERITVLVRGAVVATGAP 231
Cdd:PRK13650 172 DPEGRLELIKTIKGIRDdyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTP 224
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
15-207 |
6.07e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 52.09 E-value: 6.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLF-------GVIAGATrpTRGRVVLHGVELRGRG--PvVASRLGIGRS 85
Cdd:PRK14243 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILrcfnrlnDLIPGFR--VEGKVTFHGKNLYAPDvdP-VEVRRRIGMV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARlTVFDNLRCAA--------LHAPAERrrwwnRLRESASIDLAAARvLHDVGLdtrrdtpagELSYAEQRAL 157
Cdd:PRK14243 97 FQKPNPFPK-SIYDNIAYGAringykgdMDELVER-----SLRQAALWDEVKDK-LKQSGL---------SLSGGQQQRL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDM 207
Cdd:PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
18-229 |
6.62e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 52.80 E-value: 6.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVAsRLGIGRsFQQTSAFARLTV 97
Cdd:PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL-RQGVAM-VQQDPVVLADTF 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLrcaALHAPAERRRWWNRLresASIDLAA-ARVLHDvGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:PRK10790 432 LANV---TLGRDISEEQVWQAL---ETVQLAElARSLPD-GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEAT 504
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 177 AGMSRA--QA-ARMIALIRATTqgrTVLMIEHDMDAVFGfAERITVLVRGAVVATG 229
Cdd:PRK10790 505 ANIDSGteQAiQQALAAVREHT---TLVVIAHRLSTIVE-ADTILVLHRGQAVEQG 556
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
24-217 |
8.32e-08 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 52.28 E-value: 8.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 24 VDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVelrgrgPVVASRLGIGRsfQQTSA-FARLTVFDNLR 102
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK------PVTAEQPEDYR--KLFSAvFTDFHLFDQLL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 103 CAALHA--PAERRRWWNRLRESASIDLAAARVlhdvgLDTRrdtpageLSYAEQRALDLGIALASGARTLLLDEPTAGMS 180
Cdd:PRK10522 414 GPEGKPanPALVEKWLERLKMAHKLELEDGRI-----SNLK-------LSKGQKKRLALLLALAEERDILLLDEWAADQD 481
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1900544068 181 ----RAQAARMIALIRAttQGRTVLMIEHDmDAVFGFAERI 217
Cdd:PRK10522 482 phfrREFYQVLLPLLQE--MGKTIFAISHD-DHYFIHADRL 519
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
21-234 |
8.61e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 51.68 E-value: 8.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHgvelrgRGPVVAS-----RLGIGRSFQQ-TSAFAR 94
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYN------NQAITDDnfeklRKHIGIVFQNpDNQFVG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 95 LTV-FDNLRCAALHA-PAErrrwwnrlrESASIdlaAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLL 172
Cdd:PRK13648 99 SIVkYDVAFGLENHAvPYD---------EMHRR---VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIIL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1900544068 173 DEPTAGMSRAQAARMIALIRATTQGR--TVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAI 234
Cdd:PRK13648 167 DEATSMLDPDARQNLLDLVRKVKSEHniTIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
9-229 |
1.11e-07 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 51.80 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 9 LGVVQRFGaQTVLDgVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG---VELRGRGPVVASRLGIGRS 85
Cdd:PRK11144 4 LNFKQQLG-DLCLT-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKGICLPPEKRRIGYV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 86 FQQTSAFARLTVFDNLR--CAalhapAERRRWWNRLresasIDLaaarvlhdVGLDTRRDTPAGELSYAEQRALDLGIAL 163
Cdd:PRK11144 82 FQDARLFPHYKVRGNLRygMA-----KSMVAQFDKI-----VAL--------LGIEPLLDRYPGSLSGGEKQRVAIGRAL 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1900544068 164 ASGARTLLLDEPTAG--MSRAQAArMIALIRATTQGRT-VLMIEHDMDAVFGFAERITVLVRGAVVATG 229
Cdd:PRK11144 144 LTAPELLLMDEPLASldLPRKREL-LPYLERLAREINIpILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
19-229 |
1.51e-07 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 51.74 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGrgpvV--AS-RLGIGRSFQQTSAFARl 95
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRD----VtqASlRAAIGIVPQDTVLFND- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAALHAPAERRRwwnrlresasidlAAARV--LHD--VGLDTRRDTPAGE----LSYAE-QRaldLGIA--LA 164
Cdd:COG5265 447 TIAYNIAYGRPDASEEEVE-------------AAARAaqIHDfiESLPDGYDTRVGErglkLSGGEkQR---VAIArtLL 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 165 SGARTLLLDEPTAGM-SRAQAARMIALIRAtTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATG 229
Cdd:COG5265 511 KNPPILIFDEATSALdSRTERAIQAALREV-ARGRTTLVIAHRLSTIVD-ADEILVLEAGRIVERG 574
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
18-205 |
1.65e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.33 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPvvasrlgigrSFQQTSAFA--RL 95
Cdd:PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC----------TYQKQLCFVghRS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLrcaalhapaerrrwwnRLRESASIDLAAARVLHDV-------GLDTRRDTPAGELSYAEQRALDLGIALASGAR 168
Cdd:PRK13540 84 GINPYL----------------TLRENCLYDIHFSPGAVGItelcrlfSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK 147
|
170 180 190
....*....|....*....|....*....|....*...
gi 1900544068 169 TLLLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEH 205
Cdd:PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEhRAKGGAVLLTSH 185
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
10-64 |
1.99e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 51.47 E-value: 1.99e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVL 64
Cdd:TIGR03719 327 NLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI 381
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
21-219 |
3.12e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 50.58 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHA-----LIGPNGAGKSTLFGVIAGATRPTRGRVVLhgvELRgrgpvvasrlgIGRSFQQTSAFARL 95
Cdd:PRK13409 350 LGDFSLEVEGGEIYEgevigIVGPNGIGKTTFAKLLAGVLKPDEGEVDP---ELK-----------ISYKPQYIKPDYDG 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 96 TVFDNLRCAAlhaPAERRRWWNrlresasidlaaARVLHDVGLDTRRDTPAGELSYAE-QRaLDLGIALASGARTLLLDE 174
Cdd:PRK13409 416 TVEDLLRSIT---DDLGSSYYK------------SEIIKPLQLERLLDKNVKDLSGGElQR-VAIAACLSRDADLYLLDE 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 175 PTAGM---SRAQAARMIALIrATTQGRTVLMIEHD---MDAVfgfAERITV 219
Cdd:PRK13409 480 PSAHLdveQRLAVAKAIRRI-AEEREATALVVDHDiymIDYI---SDRLMV 526
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
133-246 |
4.73e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 50.40 E-value: 4.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 133 LHDVGLD-TRRDTPAGELSYAE-QRaldlgIALAS--GARTL----LLDEPTAGMSRAQAARMIA-LIRATTQGRTVLMI 203
Cdd:TIGR00630 472 LIDVGLDyLSLSRAAGTLSGGEaQR-----IRLATqiGSGLTgvlyVLDEPSIGLHQRDNRRLINtLKRLRDLGNTLIVV 546
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1900544068 204 EHDMDAVFGfAERITVLVRGA------VVATGAPDAIRADSR-VRAAYLG 246
Cdd:TIGR00630 547 EHDEDTIRA-ADYVIDIGPGAgehggeVVASGTPEEILANPDsLTGQYLS 595
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
21-243 |
5.61e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 49.82 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKS----TLFGVIAGATRptrGRVVLHGVELRGRGPVVASRLGIG---RSFQQTSAFA 93
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTelvqALFGAYPGKFE---GNVFINGKPVDIRNPAQAIRAGIAmvpEDRKRHGIVP 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 94 RLTVFDNLRCAALHAPAERRRWwNRLRESASIDLAAARvLHdvgLDTRR-DTPAGELSYAEQRALDLGIALASGARTLLL 172
Cdd:TIGR02633 353 ILGVGKNITLSVLKSFCFKMRI-DAAAELQIIGSAIQR-LK---VKTASpFLPIGRLSGGNQQKAVLAKMLLTNPRVLIL 427
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 173 DEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRADSRVRAA 243
Cdd:TIGR02633 428 DEPTRGVDVGAKYEIYKLINQLAQeGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQVLAAA 499
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
19-195 |
8.58e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 49.72 E-value: 8.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 19 TVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGAT----RPTRGRVV-----LHGVELRGRGPVVASRlgigrsfQQT 89
Cdd:TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTdgfhIGVEGVITydgitPEEIKKHYRGDVVYNA-------ETD 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLRCAA-LHAPAERRRWWNRLRESASIDLAAARVLhdvGLDTRRDTPAGE-----LSYAEQRALDLGIAL 163
Cdd:TIGR00956 148 VHFPHLTVGETLDFAArCKTPQNRPDGVSREEYAKHIADVYMATY---GLSHTRNTKVGNdfvrgVSGGERKRVSIAEAS 224
|
170 180 190
....*....|....*....|....*....|..
gi 1900544068 164 ASGARTLLLDEPTAGMSRAQAARMIALIRATT 195
Cdd:TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSA 256
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
14-231 |
1.65e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.79 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 14 RFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRG-PVVASRLGIgrsFQQTSAF 92
Cdd:TIGR00957 1295 REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGlHDLRFKITI---IPQDPVL 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARLTVFDNLRcaALHAPAERRRWWnrlresaSIDLAAarvLHDV------GLDTRRDTPAGELSYAEQRALDLGIALASG 166
Cdd:TIGR00957 1372 FSGSLRMNLD--PFSQYSDEEVWW-------ALELAH---LKTFvsalpdKLDHECAEGGENLSVGQRQLVCLARALLRK 1439
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 167 ARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGFAeRITVLVRGAVVATGAP 231
Cdd:TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAP 1503
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
131-234 |
3.06e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 47.70 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 131 RVLHDVGLD-TRRDTPAGELSYAE-QRaldlgIALA------SGARTL-LLDEPTAGMSRAQAARMIALI-RATTQGRTV 200
Cdd:TIGR00630 811 QTLCDVGLGyIRLGQPATTLSGGEaQR-----IKLAkelskrSTGRTLyILDEPTTGLHFDDIKKLLEVLqRLVDKGNTV 885
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1900544068 201 LMIEHDMDaVFGFAERITVL-----VRGA-VVATGAPDAI 234
Cdd:TIGR00630 886 VVIEHNLD-VIKTADYIIDLgpeggDGGGtVVASGTPEEV 924
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
15-69 |
3.50e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 47.47 E-value: 3.50e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVL-HGVEL 69
Cdd:PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLaKGIKL 377
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
22-237 |
3.86e-06 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 47.01 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 22 DGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPV--VASRLGIGRSFQQ--TSAFARLTV 97
Cdd:PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDewRAVRSDIQMIFQDplASLNPRMTI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FD----NLRCAALHAPAERRRwwNRLREsasidlaaarVLHDVGLdtrrdTP------AGELSYAE-QRaldLGIalasg 166
Cdd:PRK15079 118 GEiiaePLRTYHPKLSRQEVK--DRVKA----------MMLKVGL-----LPnlinryPHEFSGGQcQR---IGI----- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 167 ARTLLL-------DEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAIRAD 237
Cdd:PRK15079 173 ARALILepkliicDEPVSALDVSIQAQVVNLLQQLQRemGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
2-53 |
4.49e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 47.32 E-value: 4.49e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 2 NGNAIALLGVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAG 53
Cdd:PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
10-64 |
7.57e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 46.65 E-value: 7.57e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1900544068 10 GVVQRFGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVL 64
Cdd:PRK11819 329 NLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
35-231 |
7.73e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 46.76 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 35 ALIGPNGAGKSTLFGVIAGatRPTRGRVvlhgvelrgRGPVVASrlGIGRSfQQTsaFARLTVFdnlrCAA--LHAPAER 112
Cdd:PLN03140 910 ALMGVSGAGKTTLMDVLAG--RKTGGYI---------EGDIRIS--GFPKK-QET--FARISGY----CEQndIHSPQVT 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 113 RRwwNRLRESASIDLAAA-----------RVLHDVGLDTRRDTPAG-----ELSYAEQRALDLGIALASGARTLLLDEPT 176
Cdd:PLN03140 970 VR--ESLIYSAFLRLPKEvskeekmmfvdEVMELVELDNLKDAIVGlpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 177 AGM-SRAQAARMIALIRATTQGRTVLMIEH--DMDAVFGFAErITVLVRGAVVATGAP 231
Cdd:PLN03140 1048 SGLdARAAAIVMRTVRNTVDTGRTVVCTIHqpSIDIFEAFDE-LLLMKRGGQVIYSGP 1104
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
18-68 |
8.53e-06 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 44.84 E-value: 8.53e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVE 68
Cdd:cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE 64
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
20-66 |
1.07e-05 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 44.77 E-value: 1.07e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG 66
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-101 |
1.44e-05 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 45.22 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 5 AIALLGVVQRFGAQT-VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRG------RVVLHgVELRGRgpvva 77
Cdd:PRK11650 3 GLKLQAVRKSYDGKTqVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGeiwiggRVVNE-LEPADR----- 76
|
90 100
....*....|....*....|....
gi 1900544068 78 srlGIGRSFQQTSAFARLTVFDNL 101
Cdd:PRK11650 77 ---DIAMVFQNYALYPHMSVRENM 97
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
21-223 |
1.77e-05 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 45.38 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLG---IGRSFQQTSAFARLTV 97
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGivyISEDRKRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 98 FDNLRCAALhapAERRRWWNRLRESASIdLAAARVLHDVGLDT-RRDTPAGELSYAEQRAldlgIALASGART----LLL 172
Cdd:PRK10762 348 KENMSLTAL---RYFSRAGGSLKHADEQ-QAVSDFIRLFNIKTpSMEQAIGLLSGGNQQK----VAIARGLMTrpkvLIL 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1900544068 173 DEPTAGMSRAQAARMIALI-RATTQGRTVLMIEHDMDAVFGFAERITVLVRG 223
Cdd:PRK10762 420 DEPTRGVDVGAKKEIYQLInQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
225-248 |
1.78e-05 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 40.70 E-value: 1.78e-05
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
131-234 |
2.12e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 45.45 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 131 RVLHDVGLD-TRRDTPAGELSYAE-QRaldlgIALAS-------GaRTL-LLDEPTAGMSRAQAARMIA-LIRATTQGRT 199
Cdd:PRK00349 812 QTLVDVGLGyIKLGQPATTLSGGEaQR-----VKLAKelskrstG-KTLyILDEPTTGLHFEDIRKLLEvLHRLVDKGNT 885
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1900544068 200 VLMIEHDMDaVFGFAERITVL-----VRGA-VVATGAPDAI 234
Cdd:PRK00349 886 VVVIEHNLD-VIKTADWIIDLgpeggDGGGeIVATGTPEEV 925
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
25-240 |
2.79e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 44.62 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 25 DLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELrgrgpvvaSRLgigrSFQQ---------------- 88
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI--------TRL----SFEQlqklvsdewqrnntdm 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 89 -----------TSAFARLTVFDNLRCAALhapaerrrwwnrlresasidlaaARVLHDVGLDTRRDTpagELSYAEQRAL 157
Cdd:PRK10938 91 lspgeddtgrtTAEIIQDEVKDPARCEQL-----------------------AQQFGITALLDRRFK---YLSTGETRKT 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 158 DLGIALASGARTLLLDEPTAGM---SRAQAARMIAliRATTQGRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK10938 145 LLCQALMSEPDLLILDEPFDGLdvaSRQQLAELLA--SLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222
|
....*.
gi 1900544068 235 RADSRV 240
Cdd:PRK10938 223 LQQALV 228
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
21-66 |
6.74e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 43.73 E-value: 6.74e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG 66
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
15-99 |
7.73e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 43.34 E-value: 7.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVElrgrgpvvasRLGIGRsfQQTSAFAR 94
Cdd:PRK15064 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE----------RLGKLR--QDQFAFEE 78
|
....*
gi 1900544068 95 LTVFD 99
Cdd:PRK15064 79 FTVLD 83
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
17-179 |
8.83e-05 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 42.53 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 17 AQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL----RGRGPVVASRLGIGRsfqqtsaf 92
Cdd:PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAtrgdRSRFMAYLGHLPGLK-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 93 ARLTVFDNLR-CAALHAPAERRrwwnrlresasidlAAARVLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLL 171
Cdd:PRK13543 95 ADLSTLENLHfLCGLHGRRAKQ--------------MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160
|
....*...
gi 1900544068 172 LDEPTAGM 179
Cdd:PRK13543 161 LDEPYANL 168
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
15-62 |
9.54e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 43.02 E-value: 9.54e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1900544068 15 FGAQTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRV 62
Cdd:PRK11147 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
38-205 |
1.58e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 41.40 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 38 GPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRLGigrsfQQTSAFARLTVFDNLrcaalhapaerrRWWN 117
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG-----HNLGLKLEMTVFENL------------KFWS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 118 RLRESASIDLAAarvLHDVGLDTRRDTPAGELSYAEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALI-RATTQ 196
Cdd:PRK13541 96 EIYNSAETLYAA---IHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIvMKANS 172
|
....*....
gi 1900544068 197 GRTVLMIEH 205
Cdd:PRK13541 173 GGIVLLSSH 181
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
117-245 |
1.59e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 42.89 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 117 NRLreSASIDLAAARVLHDVGLDTrrdtpageLSYAEQR----ALDLGIALaSGArTLLLDEPTAGMSRAQAARMIALIR 192
Cdd:PRK00635 455 SRL--SILIDLGLPYLTPERALAT--------LSGGEQErtalAKHLGAEL-IGI-TYILDEPSIGLHPQDTHKLINVIK 522
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900544068 193 A-TTQGRTVLMIEHDmDAVFGFAERITVLVRGA------VVATGAP-DAIRADSRVRAAYL 245
Cdd:PRK00635 523 KlRDQGNTVLLVEHD-EQMISLADRIIDIGPGAgifggeVLFNGSPrEFLAKSDSLTAKYL 582
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-66 |
2.60e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 41.34 E-value: 2.60e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHG 66
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG 85
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
131-208 |
2.85e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.94 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 131 RVLHDVGLD-TRRDTPAGELSYAE-QRaldlgIALA------SGARTL-LLDEPTAGMSRAQAARMIALIRA-TTQGRTV 200
Cdd:COG0178 808 QTLQDVGLGyIKLGQPATTLSGGEaQR-----VKLAselskrSTGKTLyILDEPTTGLHFHDIRKLLEVLHRlVDKGNTV 882
|
....*...
gi 1900544068 201 LMIEHDMD 208
Cdd:COG0178 883 VVIEHNLD 890
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
154-234 |
3.00e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 41.76 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 154 QRALdLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRT--VLMIEHDMDAVFGFAERITVLVRGAVVATGAP 231
Cdd:PRK10261 175 QRVM-IAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253
|
...
gi 1900544068 232 DAI 234
Cdd:PRK10261 254 EQI 256
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
113-245 |
5.75e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 40.78 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 113 RRWWNRLRESASIDLAAARV----------LHDVGLD--T--RrdtPAGELSYAE-QRaldlgIALAS--GAR---TL-L 171
Cdd:COG0178 439 LEFFENLELTEREAEIAERIlkeirsrlgfLVDVGLDylTldR---SAGTLSGGEaQR-----IRLATqiGSGlvgVLyV 510
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 172 LDEPTAGMSRAQAARMIA-LIRATTQGRTVLMIEHDMDA---------------VFGfaeritvlvrGAVVATGAPDAIR 235
Cdd:COG0178 511 LDEPSIGLHQRDNDRLIEtLKRLRDLGNTVIVVEHDEDTiraadyiidigpgagEHG----------GEVVAQGTPEEIL 580
|
170
....*....|.
gi 1900544068 236 ADSR-VRAAYL 245
Cdd:COG0178 581 KNPDsLTGQYL 591
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
18-238 |
6.47e-04 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 40.47 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGV--------ELRGRGPVVAsrlgigrsfqQT 89
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIpltklqldSWRSRLAVVS----------QT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 90 SAFARLTVFDNLrcaALHAPAERRrwwnrlresASIDLAA--ARVLHDV-GLDTRRDTPAGE----LSYAEQRALDLGIA 162
Cdd:PRK10789 398 PFLFSDTVANNI---ALGRPDATQ---------QEIEHVArlASVHDDIlRLPQGYDTEVGErgvmLSGGQKQRISIARA 465
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 163 LASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDMDAVFGfAERITVLVRGAVVATGAPDAIRADS 238
Cdd:PRK10789 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
23-62 |
7.06e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 40.61 E-value: 7.06e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1900544068 23 GVDLSiaagERHALIGPNGAGKSTLFGVIAGATRPTRGRV 62
Cdd:PLN03073 531 GIDLD----SRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
133-208 |
8.63e-04 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 39.23 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 133 LHDVGLD-TRRDTPAGELSYAEQRALDLGIALASGA-RTL-LLDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHDMD 208
Cdd:cd03238 71 LIDVGLGyLTLGQKLSTLSGGELQRVKLASELFSEPpGTLfILDEPSTGLHQQDINQLLEVIKGlIDLGNTVILIEHNLD 150
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
18-234 |
1.01e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 40.07 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 18 QTVLDGVDLSIAAGERHALIGPNGAGKS-TLFGVIAGATRPT----------RGRVVLHGVELRGRGpVVASRlgIGRSF 86
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPvvypsgdirfHGESLLHASEQTLRG-VRGNK--IAMIF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 87 QQtsAFARLTVFDNL-----RCAALHAPAER---RRWWNRLRESASIDLAAARVlhdvgldtrRDTPAgELSYAEQRALD 158
Cdd:PRK15134 99 QE--PMVSLNPLHTLekqlyEVLSLHRGMRReaaRGEILNCLDRVGIRQAAKRL---------TDYPH-QLSGGERQRVM 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900544068 159 LGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ--GRTVLMIEHDMDAVFGFAERITVLVRGAVVATGAPDAI 234
Cdd:PRK15134 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQelNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
20-176 |
1.28e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 39.53 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLhgvelrgrgpvvASRLGIGRSFQQTSAFARLTVFD 99
Cdd:TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARP------------QPGIKVGYLPQEPQLDPTKTVRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 100 NLRCAALHAPAERRRW-------------WNRL-RESASI-DLAAARVLHD------VGLDTRR----DTPAGELSYAEQ 154
Cdd:TIGR03719 88 NVEEGVAEIKDALDRFneisakyaepdadFDKLaAEQAELqEIIDAADAWDldsqleIAMDALRcppwDADVTKLSGGER 167
|
170 180
....*....|....*....|..
gi 1900544068 155 RALDLGIALASGARTLLLDEPT 176
Cdd:TIGR03719 168 RRVALCRLLLSKPDMLLLDEPT 189
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
20-64 |
1.41e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 39.33 E-value: 1.41e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1900544068 20 VLDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVL 64
Cdd:PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
145-210 |
1.41e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.81 E-value: 1.41e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 145 PAGELSYAEQRALDLGIAL--ASGARTL-LLDEPTAGMSRAQAARMIALIRATT-QGRTVLMIEHDMDAV 210
Cdd:PRK00635 806 PLSSLSGGEIQRLKLAYELlaPSKKPTLyVLDEPTTGLHTHDIKALIYVLQSLThQGHTVVIIEHNMHVV 875
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
131-210 |
1.69e-03 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 38.78 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 131 RVLHDVGLD-TRRDTPAGELSYAEQRALDLGIALASGARTLL--LDEPTAGMSRAQAARMIALIRA-TTQGRTVLMIEHD 206
Cdd:cd03270 119 GFLVDVGLGyLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRlRDLGNTVLVVEHD 198
|
....
gi 1900544068 207 MDAV 210
Cdd:cd03270 199 EDTI 202
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
132-207 |
2.18e-03 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 39.02 E-value: 2.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 132 VLHDVGLDTRRDTPAGELSYAE-QRALdLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQGRTVLMIEHDM 207
Cdd:PRK13409 196 VVERLGLENILDRDISELSGGElQRVA-IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
15-69 |
3.23e-03 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 37.85 E-value: 3.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 15 FGAQTVLDGVDLSIAAGERH--ALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVEL 69
Cdd:PRK15112 21 FRRQTVEAVKPLSFTLREGQtlAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
21-230 |
3.59e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 36.95 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 21 LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGAtrptrgrvvlhgvelrgrgpvvasrlgigrsfqqtsafarltvfdn 100
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLA---------------------------------------------- 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 101 lrcAALHAPAERRRWWNRLRE-SASIDLAAARVLHdvgldtrrdtpagELSYAEQR----ALDLGIALASGARTLLLDEP 175
Cdd:cd03227 45 ---LGGAQSATRRRSGVKAGCiVAAVSAELIFTRL-------------QLSGGEKElsalALILALASLKPRPLYILDEI 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1900544068 176 TAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDavfgFAERITVLVRGAVVATGA 230
Cdd:cd03227 109 DRGLDPRDGQALAEAILEHLVkGAQVIVITHLPE----LAELADKLIHIKKVITGV 160
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
133-245 |
4.28e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 38.13 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 133 LHDVGLD----TRrdtPAGELSYAE-QRaldlgIALAS--GARtlL------LDEPTAGMSRAQAARMIA-LIRATTQGR 198
Cdd:PRK00349 473 LVDVGLDyltlSR---SAGTLSGGEaQR-----IRLATqiGSG--LtgvlyvLDEPSIGLHQRDNDRLIEtLKHLRDLGN 542
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1900544068 199 TVLMIEHDMDA---------------VFGfaeritvlvrGAVVATGAPDAIRADSR-VRAAYL 245
Cdd:PRK00349 543 TLIVVEHDEDTiraadyivdigpgagVHG----------GEVVASGTPEEIMKNPNsLTGQYL 595
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
22-48 |
5.96e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 34.50 E-value: 5.96e-03
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
144-225 |
6.04e-03 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 37.40 E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900544068 144 TPAGELSYAEQRALDLGIALASGARTLLLDEPTAGMSRAQAARMIALIRATTQ-GRTVLMIEHDMDAVFGFAERITVLVR 222
Cdd:PRK10982 387 TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKkDKGIIIISSEMPELLGITDRILVMSN 466
|
...
gi 1900544068 223 GAV 225
Cdd:PRK10982 467 GLV 469
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
16-80 |
9.35e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 36.87 E-value: 9.35e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1900544068 16 GAQTV--LDGVDLSIAAGERHALIGPNGAGKSTLFGVIAGATRPTRGRVVLHGVELRGRGPVVASRL 80
Cdd:PRK11308 24 PERLVkaLDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
|
|
| |
