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Conserved domains on  [gi|1900554304|emb|CAB5306432|]
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formyltetrahydrofolate deformylase [Burkholderia multivorans]

Protein Classification

formyltetrahydrofolate deformylase( domain architecture ID 11481955)

formyltetrahydrofolate deformylase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to tetrahydrofolate (FH4) and formate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
1-294 0e+00

formyltetrahydrofolate deformylase; Reviewed


:

Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 539.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   1 MSTDHSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAGRDaasaLDTLRDDFAPLAEQ 80
Cdd:PRK06027    1 MMMMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFN----LETLRADFAALAEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  81 FAMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAA 160
Cdd:PRK06027   77 FEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPV----TKETKAE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 161 QEARVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEG 240
Cdd:PRK06027  153 AEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEG 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1900554304 241 PIIEQEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVFR 294
Cdd:PRK06027  233 PIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVFR 286
 
Name Accession Description Interval E-value
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
1-294 0e+00

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 539.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   1 MSTDHSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAGRDaasaLDTLRDDFAPLAEQ 80
Cdd:PRK06027    1 MMMMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFN----LETLRADFAALAEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  81 FAMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAA 160
Cdd:PRK06027   77 FEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPV----TKETKAE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 161 QEARVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEG 240
Cdd:PRK06027  153 AEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEG 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1900554304 241 PIIEQEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVFR 294
Cdd:PRK06027  233 PIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVFR 286
PurU COG0788
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ...
5-293 0e+00

Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440551 [Multi-domain]  Cd Length: 282  Bit Score: 536.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   5 HSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAGRDaasaLDTLRDDFAPLAEQFAMR 84
Cdd:COG0788     2 TTYILTLSCPDRPGIVAAVTGFLAEHGGNITEADQFVDPETGRFFMRVEFEAPGLDFD----LEALRAAFAPLAERFGMD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  85 WELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLVGGSsdaaKAAQEAR 164
Cdd:COG0788    78 WRLHDSDRRKRVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPLAEWFGIPFHHIPVTKET----KAEAEAR 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 165 VLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIE 244
Cdd:COG0788   154 LLELLEEYDIDLVVLARYMQILSPDFCARLPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIE 233
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1900554304 245 QEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:COG0788   234 QDVERVDHRDTPEDLVRKGRDVEKRVLARAVRWHLEDRVLVNGNKTVVF 282
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
94-293 1.91e-122

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 348.01  E-value: 1.91e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  94 PRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAAQEARVLDVIDEHQ 173
Cdd:cd08648     1 KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPLAERFGIPFHHIPV----TKDTKAEAEAEQLELLEEYG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 174 ADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHS 253
Cdd:cd08648    77 VDLVVLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHR 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1900554304 254 MTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:cd08648   157 DSVEDLVRKGRDIEKQVLARAVKWHLEDRVLVYGNKTVVF 196
PurU TIGR00655
formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. ...
7-293 1.11e-118

formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273199 [Multi-domain]  Cd Length: 280  Bit Score: 341.72  E-value: 1.11e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   7 FILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAgRDAASALdtLRDDFAPLAEQFAMRWE 86
Cdd:TIGR00655   1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLEESSL--LAAFKSALAEKFEMTWE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  87 LHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLVGGSsdaaKAAQEARVL 166
Cdd:TIGR00655  78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDN----RVEHEKRQL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 167 DVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQE 246
Cdd:TIGR00655 154 ELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQD 233
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1900554304 247 VERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:TIGR00655 234 VVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTVVF 280
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
95-275 8.44e-42

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 142.43  E-value: 8.44e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  95 RVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFY--QLAASYDIPFHHFPLVGGSSdaaKAAQEARVLDVIDEH 172
Cdd:pfam00551   2 KIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAglGRAEQAGIPTFVFEHKGLTP---RSLFDQELADALRAL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 173 QADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDH 252
Cdd:pfam00551  79 AADVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILP 158
                         170       180
                  ....*....|....*....|...
gi 1900554304 253 SMTPDQLTAIGRDVECVTLARAV 275
Cdd:pfam00551 159 DDTAETLYNRVADLEHKALPRVL 181
 
Name Accession Description Interval E-value
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
1-294 0e+00

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 539.69  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   1 MSTDHSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAGRDaasaLDTLRDDFAPLAEQ 80
Cdd:PRK06027    1 MMMMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFN----LETLRADFAALAEE 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  81 FAMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAA 160
Cdd:PRK06027   77 FEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPV----TKETKAE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 161 QEARVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEG 240
Cdd:PRK06027  153 AEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEG 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1900554304 241 PIIEQEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVFR 294
Cdd:PRK06027  233 PIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVFR 286
PurU COG0788
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ...
5-293 0e+00

Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440551 [Multi-domain]  Cd Length: 282  Bit Score: 536.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   5 HSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAGRDaasaLDTLRDDFAPLAEQFAMR 84
Cdd:COG0788     2 TTYILTLSCPDRPGIVAAVTGFLAEHGGNITEADQFVDPETGRFFMRVEFEAPGLDFD----LEALRAAFAPLAERFGMD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  85 WELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLVGGSsdaaKAAQEAR 164
Cdd:COG0788    78 WRLHDSDRRKRVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPLAEWFGIPFHHIPVTKET----KAEAEAR 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 165 VLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIE 244
Cdd:COG0788   154 LLELLEEYDIDLVVLARYMQILSPDFCARLPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIE 233
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1900554304 245 QEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:COG0788   234 QDVERVDHRDTPEDLVRKGRDVEKRVLARAVRWHLEDRVLVNGNKTVVF 282
PRK13011 PRK13011
formyltetrahydrofolate deformylase; Reviewed
2-294 3.14e-172

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 237266 [Multi-domain]  Cd Length: 286  Bit Score: 477.55  E-value: 3.14e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   2 STDHSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDgagrdAASALDTLRDDFAPLAEQF 81
Cdd:PRK13011    3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-----EGLDEDALRAGFAPIAARF 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  82 AMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAAQ 161
Cdd:PRK13011   78 GMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPI----TPDTKPQQ 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 162 EARVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGP 241
Cdd:PRK13011  154 EAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGP 233
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1900554304 242 IIEQEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVFR 294
Cdd:PRK13011  234 IIEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRVFLNGNRTVVFP 286
purU PRK13010
formyltetrahydrofolate deformylase; Reviewed
1-293 1.17e-147

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 139334 [Multi-domain]  Cd Length: 289  Bit Score: 415.73  E-value: 1.17e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   1 MSTDHSFILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEqdgAGRDAASALDTLRDDFAPLAEQ 80
Cdd:PRK13010    4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH---AQSAEAASVDTFRQEFQPVAEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  81 FAMRWELHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAA 160
Cdd:PRK13010   81 FDMQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPV----TPDTKAQ 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 161 QEARVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEG 240
Cdd:PRK13010  157 QEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEG 236
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1900554304 241 PIIEQEVERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:PRK13010  237 PIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFINGDRTVVF 289
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
94-293 1.91e-122

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 348.01  E-value: 1.91e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  94 PRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLvggsSDAAKAAQEARVLDVIDEHQ 173
Cdd:cd08648     1 KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPLAERFGIPFHHIPV----TKDTKAEAEAEQLELLEEYG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 174 ADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHS 253
Cdd:cd08648    77 VDLVVLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHR 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1900554304 254 MTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:cd08648   157 DSVEDLVRKGRDIEKQVLARAVKWHLEDRVLVYGNKTVVF 196
PurU TIGR00655
formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. ...
7-293 1.11e-118

formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273199 [Multi-domain]  Cd Length: 280  Bit Score: 341.72  E-value: 1.11e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   7 FILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAgRDAASALdtLRDDFAPLAEQFAMRWE 86
Cdd:TIGR00655   1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLEESSL--LAAFKSALAEKFEMTWE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  87 LHDASVKPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQLAASYDIPFHHFPLVGGSsdaaKAAQEARVL 166
Cdd:TIGR00655  78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDN----RVEHEKRQL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 167 DVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQE 246
Cdd:TIGR00655 154 ELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQD 233
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1900554304 247 VERVDHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVVF 293
Cdd:TIGR00655 234 VVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTVVF 280
PLN02828 PLN02828
formyltetrahydrofolate deformylase
30-293 2.90e-58

formyltetrahydrofolate deformylase


Pssm-ID: 178422  Cd Length: 268  Bit Score: 187.65  E-value: 2.90e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  30 RNSNILDSAQFGDSRTGEFFMRVHFEQDgagrDAASALDTLRDDFAPLAEQF-AMRWELHDASVKP--RVVIMVSKIGHC 106
Cdd:PLN02828    8 RGGNILGVDVFVPENKNVFYSRSEFIFD----PVKWPRAQMDEDFQEISKHFkALKSVVRVPGLDPkyKIAVLASKQDHC 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 107 LNDLLFRYRTGQLPIEIPAIVSNHKDF-----YQLAASYDIPFHHFPLVGGSSdaakaaQEARVLDVIDEhqADLVVLAR 181
Cdd:PLN02828   84 LIDLLHRWQDGRLPVDITCVISNHERGpnthvMRFLERHGIPYHYLPTTKENK------REDEILELVKG--TDFLVLAR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 182 YMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHSMTPDQLTA 261
Cdd:PLN02828  156 YMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQ 235
                         250       260       270
                  ....*....|....*....|....*....|...
gi 1900554304 262 IGRDVECVTLARAVKWHVEHRIVLNGT-KTVVF 293
Cdd:PLN02828  236 KSENLEKQCLAKAIKSYCELRVLPYGTnKTVVF 268
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
93-292 2.94e-50

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 164.82  E-value: 2.94e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  93 KPRVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFY--QLAASYDIPFHHFPLVGGSSdaaKAAQEARVLDVID 170
Cdd:COG0299     1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYglERARAAGIPTFVLDHKDFPS---REAFDAALLEALD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 171 EHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERV 250
Cdd:COG0299    78 AYGPDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPV 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1900554304 251 DHSMTPDQLTAIGRDVECVTLARAVKWHVEHRIVLNGTKTVV 292
Cdd:COG0299   158 LPDDTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRL 199
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
95-277 6.16e-45

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 150.23  E-value: 6.16e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  95 RVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQL--AASYDIPFHHFPLVGGSSdaaKAAQEARVLDVIDEH 172
Cdd:cd08645     1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLerAKKAGIPTFVINRKDFPS---REEFDEALLELLKEY 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 173 QADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDH 252
Cdd:cd08645    78 KVDLIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLP 157
                         170       180
                  ....*....|....*....|....*
gi 1900554304 253 SMTPDQLTAIGRDVECVTLARAVKW 277
Cdd:cd08645   158 GDTPETLAERIHALEHRLYPEAIKL 182
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
95-275 8.44e-42

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 142.43  E-value: 8.44e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  95 RVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFY--QLAASYDIPFHHFPLVGGSSdaaKAAQEARVLDVIDEH 172
Cdd:pfam00551   2 KIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAglGRAEQAGIPTFVFEHKGLTP---RSLFDQELADALRAL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 173 QADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDH 252
Cdd:pfam00551  79 AADVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILP 158
                         170       180
                  ....*....|....*....|...
gi 1900554304 253 SMTPDQLTAIGRDVECVTLARAV 275
Cdd:pfam00551 159 DDTAETLYNRVADLEHKALPRVL 181
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
95-283 2.31e-33

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 120.55  E-value: 2.31e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  95 RVVIMVSKIGHCLNDLLFRYRTGQLPIEIPAIVSNHKDFYQL--AASYDIPFHHFPLvggSSDAAKAAQEARVLDVIDEH 172
Cdd:TIGR00639   2 RIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLerAAQAGIPTFVLSL---KDFPSREAFDQAIIEELRAH 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 173 QADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDH 252
Cdd:TIGR00639  79 EVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILP 158
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1900554304 253 SMTPDQLTAIGRDVECVTLARAVKWHVEHRI 283
Cdd:TIGR00639 159 EDTEETLEQRIHKQEHRIYPLAIAWFAQGRL 189
ACT_F4HF-DF cd04875
N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate ...
8-85 1.63e-29

N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153147 [Multi-domain]  Cd Length: 74  Bit Score: 106.88  E-value: 1.63e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900554304   8 ILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHFEQDGAGRDaasaLDTLRDDFAPLAEQFAMRW 85
Cdd:cd04875     1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLS----REALEAAFAPVAAEFDMDW 74
FMT_core cd08369
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The ...
96-277 7.74e-27

Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.


Pssm-ID: 187712 [Multi-domain]  Cd Length: 173  Bit Score: 103.14  E-value: 7.74e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  96 VVIMVSkiGHCLNDLLFRYRTGQLpIEIPAIVSNHKDFYqlaasyDIPFHHFPLVGGSSDAAKAAQEARVLDVIDEHQAD 175
Cdd:cd08369     1 IVILGS--GNIGQRVLKALLSKEG-HEIVGVVTHPDSPR------GTAQLSLELVGGKVYLDSNINTPELLELLKEFAPD 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 176 LVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHSMT 255
Cdd:cd08369    72 LIVSINFRQIIPPEILKLPPGGAINIHPSLLPRYRGVNPLAWAIINGEKETGVTVHYMDEGIDTGDIIAQEVIPISPDDT 151
                         170       180
                  ....*....|....*....|..
gi 1900554304 256 PDQLTAIGRDVECVTLARAVKW 277
Cdd:cd08369   152 AGTLYQRLIELGPKLLKEALQK 173
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
122-284 9.91e-16

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 73.96  E-value: 9.91e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 122 EIPAIVSNHKDF--YQLAASYDIPFHHFPLVGGSSDAAKAAQearVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAI 199
Cdd:PLN02331   28 DVVVVVTNKPGCggAEYARENGIPVLVYPKTKGEPDGLSPDE---LVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSIL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 200 NIHHSFLPSFkGAKPYY------QAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHSMTPDQLTAIGRDVECVTLAR 273
Cdd:PLN02331  105 NIHPALLPAF-GGKGYYgikvhkAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVE 183
                         170
                  ....*....|.
gi 1900554304 274 AVKWHVEHRIV 284
Cdd:PLN02331  184 VVAALCEERIV 194
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
162-274 2.21e-11

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 60.69  E-value: 2.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 162 EARVLDVIDEHQADLVVLaRYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRG-VKLIGATAHYVTTDLDEG 240
Cdd:cd08653    36 GPEVVAALRALAPDVVSV-YGCGIIKDALLAIPPLGVLNLHGGILPDYRGVHTGFWALANGdPDNVGVTVHLVDAGIDTG 114
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1900554304 241 PIIEQEVERVDHSMTP----DQLTAIGRDVECVTLARA 274
Cdd:cd08653   115 DVLAQARPPLAAGDTLlslyLRLYRAGVELMVEAIADL 152
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
135-266 7.66e-11

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 61.66  E-value: 7.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 135 QLAASYDIPFHHfplvggssdaAKAAQEARVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKP 214
Cdd:COG0223    50 ELALEHGIPVLQ----------PESLKDPEFLEELRALNPDLIVVVAYGQILPKEVLDIPRLGCINLHASLLPRYRGAAP 119
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1900554304 215 YYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHSMTP----DQLTAIGRDV 266
Cdd:COG0223   120 IQWAILNGDTETGVTIMQMDEGLDTGDILLQEEVPIGPDDTAgslhDKLAELGAEL 175
PLN02285 PLN02285
methionyl-tRNA formyltransferase
160-262 4.63e-10

methionyl-tRNA formyltransferase


Pssm-ID: 215159 [Multi-domain]  Cd Length: 334  Bit Score: 59.32  E-value: 4.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 160 AQEARVLDVIDEHQADLVVLARYMQILS------PNMcerlaGrAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYV 233
Cdd:PLN02285   80 AGEEDFLSALRELQPDLCITAAYGNILPqkfldiPKL-----G-TVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFT 153
                          90       100
                  ....*....|....*....|....*....
gi 1900554304 234 TTDLDEGPIIEQEVERVDHSMTPDQLTAI 262
Cdd:PLN02285  154 VRALDAGPVIAQERVEVDEDIKAPELLPL 182
FMT_core_Met-tRNA-FMT_N cd08646
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ...
135-261 1.74e-09

Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187715 [Multi-domain]  Cd Length: 204  Bit Score: 56.30  E-value: 1.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 135 QLAASYDIPFHHFPLVGGSSdaakaaqearVLDVIDEHQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKP 214
Cdd:cd08646    50 ELALELGLPVLQPEKLKDEE----------FLEELKALKPDLIVVVAYGQILPKEILDLPPYGCINVHPSLLPKYRGAAP 119
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1900554304 215 YYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVDHSMTPDQLTA 261
Cdd:cd08646   120 IQRAILNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDDTAGELLD 166
FMT_core_ArnA_N cd08644
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for ...
94-247 4.65e-07

ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal dehydrogenase domain of ArnA catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O), while the N-terminal formyltransferase domain of ArnA catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the catalytic core of the N-terminal formyltransferase domain. The formyltransferase also contains a smaller C-terminal domain the may be involved in substrate binding. ArnA forms a hexameric structure, in which the dehydrogenase domains are arranged at the center of the particle with the transformylase domains on the outside of the particle.


Pssm-ID: 187713 [Multi-domain]  Cd Length: 203  Bit Score: 49.27  E-value: 4.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  94 PRVVIMV-SKIGH-CLNDLLfryrtgQLPIEIPAIVSnHKD------FY----QLAASYDIPFHhfplvggssdAAKAAQ 161
Cdd:cd08644     1 MKAVVFAyHEVGYrCLEALL------AAGFEVVAVFT-HTDnpgeniWFgsvaQLAREHGIPVF----------TPDDIN 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 162 EARVLDVIDEHQADLVVLARYMQILSPNM--CERLAgrAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDE 239
Cdd:cd08644    64 HPEWVERLRALKPDLIFSFYYRHMISEDIleIARLG--AFNLHGSLLPKYRGRAPLNWALINGETETGVTLHRMTKKPDA 141

                  ....*...
gi 1900554304 240 GPIIEQEV 247
Cdd:cd08644   142 GAIVDQEK 149
PRK06988 PRK06988
formyltransferase;
93-247 2.09e-06

formyltransferase;


Pssm-ID: 235902 [Multi-domain]  Cd Length: 312  Bit Score: 48.15  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  93 KPR-VVIMVSKIG-HCLNDLLFRyrtgqlPIEIPAIVSnHKD----------FYQLAASYDIPFHHfplvggSSDAAKAA 160
Cdd:PRK06988    2 KPRaVVFAYHNVGvRCLQVLLAR------GVDVALVVT-HEDnpteniwfgsVAAVAAEHGIPVIT------PADPNDPE 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 161 QEARVLDVidehQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEG 240
Cdd:PRK06988   69 LRAAVAAA----APDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAG 144

                  ....*..
gi 1900554304 241 PIIEQEV 247
Cdd:PRK06988  145 AIVDQTA 151
GcvR COG2716
Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];
5-84 2.75e-06

Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];


Pssm-ID: 442029 [Multi-domain]  Cd Length: 174  Bit Score: 46.75  E-value: 2.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304   5 HSFILKLSCPDRHGIVHAVSGFLFERNSNILDS--AQFGdsrtGEF--FMRVHFEQDgagrdaasALDTLRDDFAPLAEQ 80
Cdd:COG2716     2 QHLVITAIGPDRPGIVAALARAVSEHGCNILDSrmARLG----GEFagILLVSGPWD--------AIAKLEAALPALAAE 69

                  ....
gi 1900554304  81 FAMR 84
Cdd:COG2716    70 LGLL 73
FMT_core_like_6 cd08820
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
95-246 6.22e-06

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187722 [Multi-domain]  Cd Length: 173  Bit Score: 45.51  E-value: 6.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304  95 RVVIMVSK-IGHCLNDLLFRYRTgQLPIEIPAIVSNHK--DFYQLAAsydipfhhfPLVGGSSDAAkaaQEARVLDVIDE 171
Cdd:cd08820     1 RIVFLGQKpIGEECLRTLLRLQD-RGSFEIIAVLTNTSpaDVWEGSE---------PLYDIGSTER---NLHKLLEILEN 67
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900554304 172 HQADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQE 246
Cdd:cd08820    68 KGVDILISVQYHWILPGSILEKAKEIAFNLHNAPLPEYRGCNQFSHAILNGDDQFGTTIHWMAEGIDSGDIIFEK 142
FMT_core_like_5 cd08823
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
173-247 1.34e-05

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187725 [Multi-domain]  Cd Length: 177  Bit Score: 44.74  E-value: 1.34e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1900554304 173 QADLVVLARYMQILSPNMCERLAGRAINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPII-EQEV 247
Cdd:cd08823    71 AADTVVVFTFPYRIPQHILDLPPLGFYNLHPGLLPAYRGPDPLFWQIRNQEQETAITVHKMTAEIDRGPIVlEQFT 146
ACT cd02116
ACT domains are commonly involved in specifically binding an amino acid or other small ligand ...
9-57 2.87e-05

ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times.


Pssm-ID: 153139 [Multi-domain]  Cd Length: 60  Bit Score: 41.12  E-value: 2.87e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1900554304   9 LKLSCPDRHGIVHAVSGFLFERNSNILDSAQF--GDSRTGEFFMRVHFEQD 57
Cdd:cd02116     1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRtsGDGGEADIFIVVDGDGD 51
GcvR COG2716
Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];
5-80 3.88e-05

Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];


Pssm-ID: 442029 [Multi-domain]  Cd Length: 174  Bit Score: 43.29  E-value: 3.88e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900554304   5 HSFILKLSCPDRHGIVHAVSGFLFERNSNI--LDSAQFGDSRTGEFFMRVHFEqdgAGRDAASALDTLRDDFAPLAEQ 80
Cdd:COG2716    89 LPYVVEVVGNDRPGIVAEVTQFLAERGINIedLSTKTYPAPMSGTPLFSAQIT---VHVPAGLDIDALRDALEDLADE 163
ACT pfam01842
ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to ...
8-72 4.43e-05

ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5


Pssm-ID: 426468 [Multi-domain]  Cd Length: 66  Bit Score: 40.75  E-value: 4.43e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1900554304   8 ILKLSCPDRHGIVHAVSGFLFERNSNILDSAQFGDSRTGEFFMRVHfeqDGAGRDAASALDTLRD 72
Cdd:pfam01842   2 VLEVLVPDRPGLLARVLGALADRGINITSIEQGTSEDKGGIVFVVI---VVDEEDLEEVLEALKK 63
PRK07579 PRK07579
dTDP-4-amino-4,6-dideoxyglucose formyltransferase;
127-255 6.25e-04

dTDP-4-amino-4,6-dideoxyglucose formyltransferase;


Pssm-ID: 236058 [Multi-domain]  Cd Length: 245  Bit Score: 40.27  E-value: 6.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 127 VSNHKDFYQLAASY---DIPFHHFPLVGGSSDAAKAAQEARVLDViDEHQADLVvlARYMQILSPNMCERLAG------R 197
Cdd:PRK07579   11 VHAHALAVDLIARKndmDVDYFCSFKSQTSFAKEIYQSPIKQLDV-AERVAEIV--ERYDLVLSFHCKQRFPAklvngvR 87
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1900554304 198 AINIHHSFLPSFKGAKPyyQAFDRGVKL-IGATAHYVTTDLDEGPIIEQ---EVERVDHSMT 255
Cdd:PRK07579   88 CINIHPGFNPYNRGWFP--QVFSIINGLkIGATIHEMDEQLDHGPIIAQrevEIESWDSSGS 147
PRK08125 PRK08125
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ...
122-255 3.26e-03

bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;


Pssm-ID: 236156 [Multi-domain]  Cd Length: 660  Bit Score: 38.81  E-value: 3.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 122 EIPAIVSnHKD------FY----QLAASYDIPFHhfplvggssdAAKAAQEARVLDVIDEHQADLVVLARYMQILSPNMC 191
Cdd:PRK08125   25 EIAAVFT-HTDnpgenhFFgsvaRLAAELGIPVY----------APEDVNHPLWVERIRELAPDVIFSFYYRNLLSDEIL 93
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1900554304 192 eRLAGR-AINIHHSFLPSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQE---VERVDHSMT 255
Cdd:PRK08125   94 -QLAPAgAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQrvaIAPDDTALT 160
FMT_core_like_4 cd08651
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
127-251 3.48e-03

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187720 [Multi-domain]  Cd Length: 180  Bit Score: 37.63  E-value: 3.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1900554304 127 VSNHKDFYQLAASYDIPFHHFPLVGgSSDAAKAAQEARVlDVIdehqadLVVlaRYMQILSPNMCERLAGRAINIHHSFL 206
Cdd:cd08651    39 DSDYLDLDSFARKNGIPYYKFTDIN-DEEIIEWIKEANP-DII------FVF--GWSQLLKPEILAIPRLGVIGFHPTKL 108
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1900554304 207 PSFKGAKPYYQAFDRGVKLIGATAHYVTTDLDEGPIIEQEVERVD 251
Cdd:cd08651   109 PKNRGRAPIPWAILLGLKETASTFFWMDEGADSGDILSQEPFPID 153
PRK00194 PRK00194
ACT domain-containing protein;
15-80 5.49e-03

ACT domain-containing protein;


Pssm-ID: 178923 [Multi-domain]  Cd Length: 90  Bit Score: 35.56  E-value: 5.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1900554304  15 DRHGIVHAVSGFLFERNSNILDSAQfgdsrT--GEFF---MRVHFEqdgagrDAASALDTLRDDFAPLAEQ 80
Cdd:PRK00194   12 DKVGIIAGVSTVLAELNVNILDISQ-----TimDGYFtmiMLVDIS------ESKKDFAELKEELEELGKE 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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