|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
559-841 |
2.16e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 559 KEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEE---AEQKRLAAE--LAERRKQRILREIEEKELEEAQ 633
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEkkkAEEAKKAEEdkNMALRKAEEAKKAEEARIEEVM 1598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 634 ALLEETEKRMKKGKkkplldgekvtKQSVKERALTEQLKERQEMEKKLQKLAKTMD----YLERAKREEAAPLIEAAYQR 709
Cdd:PTZ00121 1599 KLYEEEKKMKAEEA-----------KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAeekkKAEELKKAEEENKIKAAEEA 1667
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 710 RLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMlgnKEIFQAQVISRRQAEfdRIRTEREERISKIIREKKQERDI 789
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA---EELKKKEAEEKKKAE--ELKKAEEENKIKAEEAKKEAEED 1742
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 7267841 790 KRKQiyylkiEEERI-----RKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQR 841
Cdd:PTZ00121 1743 KKKA------EEAKKdeeekKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
555-885 |
4.50e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 555 DTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQA 634
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 635 LLEETEKRMKKGkkkplldgEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAplIEAAYQRRLVEE 714
Cdd:COG1196 315 EERLEELEEELA--------ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA--ELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 715 REFYEREQQREVELSKERHESDLKEKNRLSRmlgnkeifqaqvISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQI 794
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLER------------LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 795 YYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQREIELEEKSRREREELLRGTNAPPARLAEPTV 874
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330
....*....|.
gi 7267841 875 TPVGTTAPAAA 885
Cdd:COG1196 533 EAAYEAALEAA 543
|
|
| PCI |
pfam01399 |
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and ... |
434-509 |
6.68e-10 |
|
PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Pssm-ID: 460195 Cd Length: 105 Bit Score: 57.23 E-value: 6.68e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7267841 434 LPEVQLSQYVPSLEKLATLRLLQQVSKIYQTIRIESLSQLVPFFQfSEVEKISVDAVKNNFVAMKVDHMKGVVIFG 509
Cdd:pfam01399 30 LLDDGLAEHLEDLRRKIREHNLRQLSKPYSSISLSDLAKLLGLSV-DEVEKILAKLIRDGRIRAKIDQVNGIVVFS 104
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
558-844 |
1.56e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRilreieekeleeAQALLE 637
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE------------AQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKplLDGEKVTKQSVKERaLTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREF 717
Cdd:COG1196 292 ELLAELARLEQD--IARLEERRRELEER-LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 718 YEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQiyyl 797
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL---- 444
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 7267841 798 kIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQRE 844
Cdd:COG1196 445 -EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
|
| PINT |
smart00088 |
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, ... |
441-531 |
1.74e-09 |
|
motif in proteasome subunits, Int-6, Nip-1 and TRIP-15; Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Pssm-ID: 214509 [Multi-domain] Cd Length: 88 Bit Score: 55.33 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 441 QYVPSLEKLATLRLLQQVSKIYQTIRIESLSQLVPFFQfSEVEKISVDAVKNNFVAMKVDHMKGVVIFGnlgiESDGLR- 519
Cdd:smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSV-PEVEKLVSKAIRDGEISAKIDQVNGIVEFE----EVDPRRs 75
|
90
....*....|..
gi 7267841 520 DHLAVFAESLSK 531
Cdd:smart00088 76 EPLAQFAETLKK 87
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
558-845 |
2.76e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRlKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLE 637
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK-KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLDGEKVTKQSVKERAltEQLKERQEMEKKLQ-KLAKTMDYLERAKREEA--------APLIEAAYQ 708
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKA--EEKKKADELKKAEElKKAEEKKKAEEAKKAEEdknmalrkAEEAKKAEE 1591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 709 RRLVEEREFYEREQQREVELSKERHESDLK-EKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQER 787
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 7267841 788 DIKRKQIYYLKIEEERIRKLQEEEEARKQEEA-ERLKKVEAERKANLDKAFEKQRQREI 845
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaEELKKKEAEEKKKAEELKKAEEENKI 1730
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
570-845 |
7.43e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 59.75 E-value: 7.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 570 IIEKRKEDQERQQLEMEREEEQKRLKlqklteeAEQKRLAAELaERRKQRILREIEEKELEEAQALLEETEKRMKKGKKK 649
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLR-------QEKEEKAREV-ERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 650 PLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAktmdyLERA-KREEAAPLIEAAYQRRLVE-EREFYEREQQREVE 727
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLQ-----MERQqKNERVRQELEAARKVKILEeERQRKIQQQKVEME 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 728 -LSKERHESDLKEKNRLSRmlgnkeifqaqvisRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYYLKIEEERIRk 806
Cdd:pfam17380 424 qIRAEQEEARQREVRRLEE--------------ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKR- 488
|
250 260 270
....*....|....*....|....*....|....*....
gi 7267841 807 lqeeeearkqEEAERLKKVEAERKANLDKAFEKQRQREI 845
Cdd:pfam17380 489 ----------AEEQRRKILEKELEERKQAMIEEERKRKL 517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-842 |
1.74e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 567 RKSIIEKRKEDQERQQLEMEREEEQKRlKLQKLTEEAEQKRLAAELA----ERRKQRILREIEEKELEEAQALLEETEKR 642
Cdd:PTZ00121 1431 KKADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAEEAKKADEAKkkaeEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 643 MKKGKKKPLLDGEKVTK-QSVKERALTEQLKERQEMEKKLQ-------KLAKTMDYLERAKREEA--------APLIEAA 706
Cdd:PTZ00121 1510 KKADEAKKAEEAKKADEaKKAEEAKKADEAKKAEEKKKADElkkaeelKKAEEKKKAEEAKKAEEdknmalrkAEEAKKA 1589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 707 YQRRLVEEREFYEREQQREVELSKE-----------RHESDLKEKNRLSRMLGNKEIFQAQVIsRRQAEFDRIRTE---- 771
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKaeeakikaeelKKAEEEKKKVEQLKKKEAEEKKKAEEL-KKAEEENKIKAAeeak 1668
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7267841 772 REERISKIIREKKQERDIKRKQIYYLKIEEERIRKLQE--EEEARKQEEAERLKKVEAERKANLDKAFEKQRQ 842
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
556-844 |
7.65e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 7.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 556 TVEKEHKRLLARKSIIEKRKEDQERQQLE--------MEREEEQKRlKLQKLTEEAEQKRLAAEL---AERRKQRILREI 624
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEedkkkadeLKKAAAAKK-KADEAKKKAEEKKKADEAkkkAEEAKKADEAKK 1451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 625 EEKELEEAQALLEETEKRMKKGKKKPLLD----GEKVTKQSVKERALTEQLKERQEMEKKLQKL-----AKTMDYLERAK 695
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEeakkADEAKKKAEEAKKKADEAKKAAEAKKKADEAkkaeeAKKADEAKKAE 1531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 696 REEAAPLIEAAYQRRLVEE----REFYEREQQREVElSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTE 771
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADElkkaEELKKAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7267841 772 --REERISKIIREK-KQERDIKRKQIYYLKIEEERIRKlqeEEEARKQEEAERLKKVEAERKANLDKAFEKQRQRE 844
Cdd:PTZ00121 1611 eaKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKK---AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
556-805 |
1.21e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.90 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 556 TVEKEHKRLLArksiieKRKEDQERQQLEmEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQAL 635
Cdd:pfam17380 334 AIYAEQERMAM------ERERELERIRQE-ERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKI 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 636 LEEtEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKER-QEMEKKLQKLAKTMDYLERAKREEAAplieaayQRRLVEE 714
Cdd:pfam17380 407 LEE-ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaREMERVRLEEQERQQQVERLRQQEEE-------RKRKKLE 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 715 REFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQaefDRIRTEREERISKIIREKKQERDIKRK-Q 793
Cdd:pfam17380 479 LEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQ---KAIYEEERRREAEEERRKQQEMEERRRiQ 555
|
250
....*....|..
gi 7267841 794 IYYLKIEEERIR 805
Cdd:pfam17380 556 EQMRKATEERSR 567
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
554-734 |
5.86e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 5.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 554 ADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAElaerrkqriLREIEEKELEEAQ 633
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE---------LKKKEAEEKKKAE 1719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 634 ALLEETEKRMkkgkkkplLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTmdylERAKREEAAPLIEAAYQRRLVE 713
Cdd:PTZ00121 1720 ELKKAEEENK--------IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE----EEKKAEEIRKEKEAVIEEELDE 1787
|
170 180
....*....|....*....|.
gi 7267841 714 EREFYEREQQREVELSKERHE 734
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFA 1808
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
558-845 |
9.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTE------EAEQKRLAAELAE-----RRKQRILREIEE 626
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikdlgEEEQLRVKEKIGEleaeiASLERSIAEKER 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 627 KELEEAQALLEETEKRMKKGKKKPLLDGEkVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAA 706
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELERE-IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 707 YQrrLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRrQAEFDRIRTEREERISKIIREKKQE 786
Cdd:TIGR02169 395 EK--LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK-ALEIKKQEWKLEQLAADLSKYEQEL 471
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 7267841 787 RDIKRKqiyyLKIEEERIRKLqeeeearkqeeAERLKKVEAERKANLDKAFEKQRQREI 845
Cdd:TIGR02169 472 YDLKEE----YDRVEKELSKL-----------QRELAEAEAQARASEERVRGGRAVEEV 515
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
583-864 |
1.19e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 583 LEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEKrmkkgkkkplldgekvtKQSV 662
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL-----------------ELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 663 KERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNR 742
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 743 LSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIyylKIEEERIRKLQEEEEARKQEEAERL 822
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE---ALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 7267841 823 KKVEAERKANLDKAFEKQRQREIELEEKSRREREELLRGTNA 864
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
526-871 |
1.22e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 526 AESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRlKLQKLTEEAEQ 605
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-KADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 606 -KRLAAEL----AERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKV--TKQSVKERALTEQLKERQEME 678
Cdd:PTZ00121 1403 dKKKADELkkaaAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAeeAKKKAEEAKKADEAKKKAEEA 1482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 679 KKLQKLAKTMDYLERaKREEAAPLIEAayQRRLVEEREFYEREQQREVELSKERHESD----LKEKNRLSRMLGNKEIFQ 754
Cdd:PTZ00121 1483 KKADEAKKKAEEAKK-KADEAKKAAEA--KKKADEAKKAEEAKKADEAKKAEEAKKADeakkAEEKKKADELKKAEELKK 1559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 755 AQ----VISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYYL-------KIEEERIRKLQEEEEARKQEEAERLK 823
Cdd:PTZ00121 1560 AEekkkAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmkaeeakKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 7267841 824 KVEAERKAnldKAFEKQRQREIELEEKSRREREELLRGTNAPPARLAE 871
Cdd:PTZ00121 1640 KKEAEEKK---KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
562-844 |
1.66e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 562 KRLLARKSIIEKRKEDQERQQLEMEREE--EQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEET 639
Cdd:pfam02463 727 VQEAQDKINEELKLLKQKIDEEEEEEEKsrLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRAL 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 640 EKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYE 719
Cdd:pfam02463 807 EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKD 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 720 REQQREVELSKERHESDLKEKnrlsrmLGNKEIFQAQVISRRQAEfdrIRTEREERISKIIREKKQERDIKRKQIYYLKI 799
Cdd:pfam02463 887 ELESKEEKEKEEKKELEEESQ------KLNLLEEKENEIEERIKE---EAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 7267841 800 EEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQRE 844
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
559-845 |
1.07e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 559 KEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEE 638
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 639 TEKRMKKGKKKPlldgEKVTKQSVKERAlTEQLKERQEMEKKLQKlAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFY 718
Cdd:PTZ00121 1301 KKKADEAKKKAE----EAKKADEAKKKA-EEAKKKADAAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 719 ER-----------EQQREVELSKERHESDLKEKNRLSRMLGNK---EIFQAQVISRRQAEFDRIRTE---REERISKIIR 781
Cdd:PTZ00121 1375 EAkkkadaakkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKkkaDEAKKKAEEKKKADEAKKKAEeakKADEAKKKAE 1454
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7267841 782 EKKQERDIKRKQIYYLKIEE-----ERIRK---LQEEEEARKQEEAERLKKVEAERKAN-LDKAFEKQRQREI 845
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEakkkaEEAKKadeAKKKAEEAKKKADEAKKAAEAKKKADeAKKAEEAKKADEA 1527
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
508-807 |
1.98e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 508 FGNLGIESDGLRDHLAVFAESLSKVRamlypvpSKASKLAGVIPNLADTVEKEHKRLLARK-----------SIIEKRKE 576
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELR-------EREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsPHVETIEE 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 577 DQER-QQLEMEREE-EQKRLKLQKLTEEAEQKRLAAELAERRKQRilREIEEKELEEAQALLEE-TEKRMKKGKKKPLLD 653
Cdd:PRK02224 473 DRERvEELEAELEDlEEEVEEVEERLERAEDLVEAEDRIERLEER--REDLEELIAERRETIEEkRERAEELRERAAELE 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 654 GEKVTKQSVKERALTEQLKERQE---MEKKLQKLAKTMDYLERAkrEEAAPLIEaAYQRRLVEEREfyEREQQREVElsK 730
Cdd:PRK02224 551 AEAEEKREAAAEAEEEAEEAREEvaeLNSKLAELKERIESLERI--RTLLAAIA-DAEDEIERLRE--KREALAELN--D 623
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7267841 731 ERHESdLKEKNRLSRMLGNKeiFQAQVISRRQAEFDRIrTEREERISKIIREKKQERDIKRKQIYYLKIEEERIRKL 807
Cdd:PRK02224 624 ERRER-LAEKRERKRELEAE--FDEARIEEAREDKERA-EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
552-806 |
2.10e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 552 NLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKR-------LAAELAERRKQRILREI 624
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEqllieqeEKIKEEELEELALELKE 844
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 625 EEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIE 704
Cdd:pfam02463 845 EQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 705 AAYQRRLVEEREFYEREQQREVELSKErHESDLKEKNRLSRMLGNKEIFQAQVISRRqAEFDRIRTEREERISKIIREKK 784
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEKE-ENNKEEEEERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEE 1002
|
250 260
....*....|....*....|..
gi 7267841 785 QERDIKRKQIyylKIEEERIRK 806
Cdd:pfam02463 1003 EKKKLIRAII---EETCQRLKE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
558-807 |
3.63e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRIlrEIEEKELEEAQALLE 637
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL--QKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLDGEKVTKQSVK-ERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEERE 716
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEElESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 717 FYEREQQREVELSKERHESDLKE-KNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIY 795
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERlEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250
....*....|..
gi 7267841 796 YLKIEEERIRKL 807
Cdd:TIGR02168 462 ALEELREELEEA 473
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
558-742 |
4.21e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSI-IEKRKEDQER------QQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRIlreiEEKELE 630
Cdd:pfam17380 408 EEERQRKIQQQKVeMEQIRAEQEEarqrevRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL----ELEKEK 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 631 EAQALLEETEkrmkkgkkkplldgEKVTKQSVKER--ALTEQLKERQEMEKKLQKLAKTMdYLERAKReeaapliEAAYQ 708
Cdd:pfam17380 484 RDRKRAEEQR--------------RKILEKELEERkqAMIEEERKRKLLEKEMEERQKAI-YEEERRR-------EAEEE 541
|
170 180 190
....*....|....*....|....*....|....
gi 7267841 709 RRLVEEREFYEREQQREVELSKERHESDLKEKNR 742
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
558-853 |
4.90e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLE 637
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEA----AYQRRLVE 713
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvdlvASDLREAD 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 714 EREFYEREQQREVELSKERHESDLKEKNRLSRMLGnKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQ 793
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR-EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 794 IYYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQREIELEEKSRR 853
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
552-842 |
6.49e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 6.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 552 NLADTVEKEHKRLLARKSIIEKRKEDQERQQLE-MEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELE 630
Cdd:PTZ00121 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEEaKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKA 1166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 631 EAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERAlteQLKERQEMEKKLQKLAKTmdylERAKREEAAPLIEAAYQrr 710
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKA---EAARKAEEERKAEEARKA----EDAKKAEAVKKAEEAKK-- 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 711 lvEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIK 790
Cdd:PTZ00121 1238 --DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 7267841 791 RKQIYYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQ 842
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-844 |
1.06e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREE--EQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQAL 635
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAkkALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 636 LEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEER 715
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 716 EFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQA-----EFDRIRTEREERISKIIREKKQERDIK 790
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLEserlsSAAKLKEEELELKSEEEKEAQLLLELA 414
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 7267841 791 RKQIYYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQRE 844
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
559-843 |
1.61e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 559 KEHKRLLArksiiEKRKEDQERQQLEMEREEEQK-RLKLQKLTEEAEqkrLAAELAERRKQRILREIEEKELEEAQALLE 637
Cdd:TIGR00618 163 KEKKELLM-----NLFPLDQYTQLALMEFAKKKSlHGKAELLTLRSQ---LLTLCTPCMPDTYHERKQVLEKELKHLREA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLdgEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREF 717
Cdd:TIGR00618 235 LQQTQQSHAYLTQKR--EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 718 YEREQQREVELSKERHESDLKEKNRLSRMLgnkeifQAQVISRRQAEFDRIRTEREERISKiirekkqeRDIKRKQiyyl 797
Cdd:TIGR00618 313 HTELQSKMRSRAKLLMKRAAHVKQQSSIEE------QRRLLQTLHSQEIHIRDAHEVATSI--------REISCQQ---- 374
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 7267841 798 KIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQR 843
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR 420
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
571-844 |
1.64e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 571 IEKRKEDQERQQ------LEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEkrmk 644
Cdd:TIGR02168 198 LERQLKSLERQAekaeryKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR---- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 645 kgkkkpLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERaKREEAAPLIEAAYQRRLveerefyerEQQR 724
Cdd:TIGR02168 274 ------LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER-QLEELEAQLEELESKLD---------ELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 725 EVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEReeriSKIIREKKQERDIkRKQIYYLKIE---- 800
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR----SKVAQLELQIASL-NNEIERLEARlerl 412
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 7267841 801 EERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQRE 844
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
557-798 |
1.82e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 557 VEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALL 636
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 637 EETEKRMKKGKKKPLLDGEKVTKQSVKEraLTEQLKERQEMEKK-----------------LQKLAKTMDYLERAKREEA 699
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEE--LEEKVKELKELKEKaeeyiklsefyeeyldeLREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 700 APLIEAAYQRRLVEEREFYEREQQREVELSKERHE------SDLKEKNRLSRMLGNKEIfqaQVISRRQAEFDRIRTERE 773
Cdd:PRK03918 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeeakAKKEELERLKKRLTGLTP---EKLEKELEELEKAKEEIE 404
|
250 260
....*....|....*....|....*...
gi 7267841 774 ERISKIIREK---KQERDIKRKQIYYLK 798
Cdd:PRK03918 405 EEISKITARIgelKKEIKELKKAIEELK 432
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
567-845 |
2.06e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 567 RKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAE-------------RRKQRILREIEEKELEEAQ 633
Cdd:PTZ00121 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKaeaeaaadeaeaaEEKAEAAEKKKEEAKKKAD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 634 ALLEETEKRM--KKGKKKPLLDGEKV--TKQSVKERALTEQLKERQEMEKKLQKLAKTMDylERAKREEAApliEAAYQR 709
Cdd:PTZ00121 1382 AAKKKAEEKKkaDEAKKKAEEDKKKAdeLKKAAAAKKKADEAKKKAEEKKKADEAKKKAE--EAKKADEAK---KKAEEA 1456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 710 RLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIR--EKKQER 787
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKkaEEAKKA 1536
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 7267841 788 DIKRKQiyylkieeERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQREI 845
Cdd:PTZ00121 1537 DEAKKA--------EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
564-844 |
2.38e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 564 LLARKSIIEKRKEDQErqqlEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEEtekrm 643
Cdd:TIGR02168 672 ILERRREIEELEEKIE----ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV----- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 644 kkgkkkplldgEKVTKQSVK-ERALTEQLKERQEMEKKLQKLAKTMDYLErAKREEAAPLIEAAyQRRLVEEREFYEREQ 722
Cdd:TIGR02168 743 -----------EQLEERIAQlSKELTELEAEIEELEERLEEAEEELAEAE-AEIEELEAQIEQL-KEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 723 QREVELSKERHESDLKEKNRLSRMlgnkeIFQAQVISRRQAEFDRIRtEREERISKIIREKKQERDIKRKQIYYLKIEEE 802
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRI-----AATERRLEDLEEQIEELS-EDIESLAAEIEELEELIEELESELEALLNERA 883
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 7267841 803 RIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQRE 844
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
653-845 |
4.16e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 653 DGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDY--LERAKREEAAPLIEAAyqRRLVEEREFyerEQQREVELSK 730
Cdd:PTZ00121 1102 EAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDArkAEEARKAEDAKRVEIA--RKAEDARKA---EEARKAEDAK 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 731 ERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYYLKIEEER----IRK 806
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERnneeIRK 1256
|
170 180 190
....*....|....*....|....*....|....*....
gi 7267841 807 LQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQREI 845
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
555-805 |
4.39e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 555 DTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTE-----EAEQKRLAAELAERRKQRIlreieekel 629
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriaqlSKELTELEAEIEELEERLE--------- 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 630 eEAQALLEETEKRMKKGKKKPLLDGEKVTKQsvkERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQR 709
Cdd:TIGR02168 772 -EAEEELAEAEAEIEELEAQIEQLKEELKAL---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 710 RLVEEREFYEREQQREVELSKERHESDLKEKnrlsrmLGNKEIFQAQVISRRQAEFDRIRTEREerISKIIREKKQERDI 789
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEAL------LNERASLEEALALLRSELEELSEELRE--LESKRSELRRELEE 919
|
250
....*....|....*.
gi 7267841 790 KRKQIYYLKIEEERIR 805
Cdd:TIGR02168 920 LREKLAQLELRLEGLE 935
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-806 |
4.74e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQL-EMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREieekeLEEAQALL 636
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENkEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK-----LKESEKEK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 637 EETEKRMKKGKKKPLldgEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLV-EER 715
Cdd:pfam02463 324 KKAEKELKKEKEEIE---ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEElELK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 716 EFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIF----QAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKR 791
Cdd:pfam02463 401 SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESielkQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLV 480
|
250
....*....|....*
gi 7267841 792 KQIYYLKIEEERIRK 806
Cdd:pfam02463 481 KLQEQLELLLSRQKL 495
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
553-839 |
5.83e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 43.37 E-value: 5.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 553 LADTVEKEHKRLLARKSIIEKRKEDQERQQLEM------EREEEQKRLKLQKLTE-----EAEQKRLAAELAERRKQRIL 621
Cdd:pfam13868 45 LDEMMEEERERALEEEEEKEEERKEERKRYRQEleeqieEREQKRQEEYEEKLQEreqmdEIVERIQEEDQAEAEEKLEK 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 622 REIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKlQKLAKTMDYLERAKREEAAp 701
Cdd:pfam13868 125 QRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKE-REIARLRAQQEKAQDEKAE- 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 702 lIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLgnKEIFQAQVISRRQAEFDRI--RTEREERISKI 779
Cdd:pfam13868 203 -RDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIEL--KERRLAEEAEREEEEFERMlrKQAEDEEIEQE 279
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 780 IREKKQERDIKRKQIYYLKIEEerIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEK 839
Cdd:pfam13868 280 EAEKRRMKRLEHRRELEKQIEE--REEQRAAEREEELEEGERLREEEAERRERIEEERQK 337
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
558-760 |
6.07e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 43.40 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQ-KLTEEAEQKRLAAELAERRKQrilreIEEKELEEAQALL 636
Cdd:pfam15709 312 EEERSEEDPSKALLEKREQEKASRDRLRAERAEMRRLEVErKRREQEEQRRLQQEQLERAEK-----MREELELEQQRRF 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 637 EETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQ-EMEKKLQKL--AKTMDYLERA----KREEAAPLIEAAYQR 709
Cdd:pfam15709 387 EEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQQeEFRRKLQELqrKKQQEEAERAeaekQRQKELEMQLAEEQK 466
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 7267841 710 RLV----EEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISR 760
Cdd:pfam15709 467 RLMemaeEERLEYQRQKQEAEEKARLEAEERRQKEEEAARLALEEAMKQAQEQAR 521
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
558-839 |
6.16e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 6.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLE 637
Cdd:pfam02463 747 EEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREF 717
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES 906
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 718 YEREQQREVELSKERHESDLKEKNRLSRMLgNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYYL 797
Cdd:pfam02463 907 QKLNLLEEKENEIEERIKEEAEILLKYEEE-PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEE 985
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 7267841 798 KieEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEK 839
Cdd:pfam02463 986 K--EERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLEL 1025
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
553-798 |
7.06e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 7.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 553 LADTVEKEHKRLLARKSIIEKRK----EDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKE 628
Cdd:pfam02463 266 KLAQVLKENKEEEKEKKLQEEELkllaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 629 LEEAQ--ALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKER-QEMEKKLQKLAKTMDYLERAKREEAAPLIEA 705
Cdd:pfam02463 346 ELEIKreAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKeEELELKSEEEKEAQLLLELARQLEDLLKEEK 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 706 AYQRRLVEE-REFYEREQQREVELSKERHESDLKE-KNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREK 783
Cdd:pfam02463 426 KEELEILEEeEESIELKQGKLTEEKEELEKQELKLlKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
250
....*....|....*
gi 7267841 784 KQERDIKRKQIYYLK 798
Cdd:pfam02463 506 RSGLKVLLALIKDGV 520
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
572-807 |
8.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 572 EKRKEDQERQQLEMEREEEQKRLKLQKlteeAEQKRLAAELAERRKQRIlreieekeleEAQALLEETEkrmkkgkkkpl 651
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALK----KEEKALLKQLAALERRIA----------ALARRIRALE----------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 652 ldgEKVTKQSVKERALTEQLKE-RQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Cdd:COG4942 76 ---QELAALEAELAELEKEIAElRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7267841 731 ERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERiSKIIREKKQERDIKRKQIYYLKIEEERIRKL 807
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
558-835 |
9.59e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 42.60 E-value: 9.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIeekeleeaQALLE 637
Cdd:pfam13868 66 ERKEERKRYRQELEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQLREEI--------DEFNE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLDGEKVtKQSVKERALTEQLKERQEMEKKLQK---LAKTMDYLERAKREEAAplIEAAYQRRLVEE 714
Cdd:pfam13868 138 EQAEWKELEKEEEREEDERI-LEYLKEKAEREEEREAEREEIEEEKereIARLRAQQEKAQDEKAE--RDELRAKLYQEE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 715 REFYEREQQREVELSKERHESDLKEKNRLSRMLgnKEIFQAQVISRRQAEFDRI--RTEREERISKIIREKKQERDIKRK 792
Cdd:pfam13868 215 QERKERQKEREEAEKKARQRQELQQAREEQIEL--KERRLAEEAEREEEEFERMlrKQAEDEEIEQEEAEKRRMKRLEHR 292
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 7267841 793 QIYYLKIEEERIRKLQEEE------EARKQEEAERLKKVEAERKANLDK 835
Cdd:pfam13868 293 RELEKQIEEREEQRAAEREeeleegERLREEEAERRERIEEERQKKLKE 341
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
529-750 |
1.87e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 529 LSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRL 608
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 609 AAELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSV--KERALTEQLKERQEMEKKLQKLAK 686
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIaaTERRLEDLEEQIEELSEDIESLAA 859
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7267841 687 TMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNK 750
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
558-840 |
2.14e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQErqqlEMEREEEQKRLKLQKLTEEAEQKRLAAELAErrKQRILREIEEKELEEAQALLE 637
Cdd:TIGR00606 781 EESAKVCLTDVTIMERFQMELK----DVERKIAQQAAKLQGSDLDRTVQQVNQEKQE--KQHELDTVVSKIELNRKLIQD 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 638 ETEKRMKKGKKKPLLDGEKVTkqsvkeraLTEQLKERQEMEKKLQKLAKTMDYLERA---KREEAAPLieaayqrrlvee 714
Cdd:TIGR00606 855 QQEQIQHLKSKTNELKSEKLQ--------IGTNLQRRQQFEEQLVELSTEVQSLIREikdAKEQDSPL------------ 914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 715 REFYEREQQREVELSKERHESDLKEKNRLSRM---LGNKEIFQAQVISRRQAEFDRIRTEREERISKIIR-----EKKQE 786
Cdd:TIGR00606 915 ETFLEKDQQEKEELISSKETSNKKAQDKVNDIkekVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAqleecEKHQE 994
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 7267841 787 RDIKRKQIYYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQ 840
Cdd:TIGR00606 995 KINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ 1048
|
|
| MAT1 |
pfam06391 |
CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for ... |
558-621 |
4.38e-03 |
|
CDK-activating kinase assembly factor MAT1; MAT1 is an assembly/targeting factor for cyclin-dependent kinase-activating kinase (CAK), which interacts with the transcription factor TFIIH. The domain found to the N-terminal side of this domain is a C3HC4 RING finger.
Pssm-ID: 461894 [Multi-domain] Cd Length: 202 Bit Score: 39.53 E-value: 4.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7267841 558 EKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKRlaaelAERRKQRIL 621
Cdd:pfam06391 74 EKENKDLILKNKMKLSQEEEELEELLELEKREKEERRKEEKQEEEEEKEK-----KEKAKQELI 132
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
538-732 |
4.59e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.60 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 538 PVPSKASKLAGVIPNLADTVEKEHKRLlaRKSIIEKRKEDQERQQlemEREEEQKRLKLQKLTEEAEQKRL--------A 609
Cdd:TIGR02794 29 PEPGGGAEIIQAVLVDPGAVAQQANRI--QQQKKPAAKKEQERQK---KLEQQAEEAEKQRAAEQARQKELeqraaaekA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 610 AELAERRKQRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTM- 688
Cdd:TIGR02794 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKa 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7267841 689 DYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKER 732
Cdd:TIGR02794 184 EAEAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAER 227
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
560-842 |
4.82e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 40.29 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 560 EHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTEEAEQKR-LAAELAERRKQRILReieekeleeAQALLEE 638
Cdd:pfam13868 29 AEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEERKRYRQeLEEQIEEREQKRQEE---------YEEKLQE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 639 tekrmkkgkkkplldgekvtKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKRE-EAAPLIEAAYQRRLVEEREF 717
Cdd:pfam13868 100 --------------------REQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEqAEWKELEKEEEREEDERILE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 718 YEREQQREVELSKERHESDLKEKNRLSRMLGNkeifQAQVISRRQAEFDRIRT----------EREERISKIIREKKQER 787
Cdd:pfam13868 160 YLKEKAEREEEREAEREEIEEEKEREIARLRA----QQEKAQDEKAERDELRAklyqeeqerkERQKEREEAEKKARQRQ 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 7267841 788 DIKRKQIYYLKIEEERIRKLQEEEEARKQEEAERLKKVEAERKANLDKAFEKQRQ 842
Cdd:pfam13868 236 ELQQAREEQIELKERRLAEEAEREEEEFERMLRKQAEDEEIEQEEAEKRRMKRLE 290
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
518-792 |
5.61e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 518 LRDHLAVFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQ 597
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 598 KLTE-EAEQKRLAAELAERRKQ---------RILREIEEKELEEAQALLEETEkrmkkgkkkplldgekvtkqsvKERAl 667
Cdd:TIGR02169 752 EIENvKSELKELEARIEELEEDlhkleealnDLEARLSHSRIPEIQAELSKLE----------------------EEVS- 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 668 tEQLKERQEMEKKLQKLAKTMDYLERAKREEAAplieaayQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRML 747
Cdd:TIGR02169 809 -RIEARLREIEQKLNRLTLEKEYLEKEIQELQE-------QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 7267841 748 GNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRK 792
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
551-764 |
7.82e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 551 PNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQKLTE-----EAEQKRLAAELAE-RRKQRILREI 624
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriralEQELAALEAELAElEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 625 EEKELEEAQALLEETEKRMKKGKKKPLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYLERAKREEAAPLie 704
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL-- 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 705 AAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLGNKEIFQAQVISRRQAE 764
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
524-734 |
1.00e-02 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.60 E-value: 1.00e-02
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 524 VFAESLSKVRAMLYPVPSK-ASKLAGVIP----NLADTVEKEHKRLLARKSIIEKRKEDQERQ---QLEM----EREEEQ 591
Cdd:pfam05262 131 VVTKSLTKENAGLARRYDQwPGKTQIVIPlkknILSGNVSDVDTDSISDKKVVEALREDNEKGvnfRRDMtdlkERESQE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7267841 592 KRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEkrmkkgkkkpLLDGEKVTKQSVKERALTEQL 671
Cdd:pfam05262 211 DAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKN----------LPKPADTSSPKEDKQVAENQK 280
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7267841 672 KERQEMEKKLQKLAKTMDYLERAKREEAAPlieaayqrrlvEEREFYEREQQREVELSKERHE 734
Cdd:pfam05262 281 REIEKAQIEIKKNDEEALKAKDHKAFDLKQ-----------ESKASEKEAEDKELEAQKKREP 332
|
|
| |
