|
Name |
Accession |
Description |
Interval |
E-value |
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
5-218 |
2.13e-101 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 295.26 E-value: 2.13e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPGVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgsSRGRQEVRRRLGYLP 84
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV--LKQPQKLRRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV-LELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 165 TVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-227 |
5.02e-91 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 269.63 E-value: 5.02e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGssRGRQEVRRRLGYL 83
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGeIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVA--RDPAEVRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYGL-PRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 164 PTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARA 227
Cdd:COG1131 158 PTSGLDPEARRELWELLRElAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
7-226 |
1.12e-73 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 225.89 E-value: 1.12e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 7 ASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgsSRGRQEVRRRLGYLPQ 85
Cdd:COG4555 4 VENLSKKYGKVPALKDVSFTAKDGeITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDV--RKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAFEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPT 165
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDEELKKRIEEL-IELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 166 VGLDPEQRMRFRELI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:COG4555 161 NGLDVMARRLLREILrALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-212 |
1.14e-69 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 213.03 E-value: 1.14e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGssRGRQEVRRRLGYL 83
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGeIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK--KEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFVDYvailkeladrrerhrevrrvleevdlgevrgrrikklSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03230 79 PEEPSLYENLTVRENLKL-------------------------------------SGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 164 PTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:cd03230 122 PTSGLDPESRREFWELLRElKKEGKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-232 |
3.60e-59 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 190.70 E-value: 3.60e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGssrgrQEVRRRLGY 82
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGeIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD-----PEDRRRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:COG4152 76 LPEERGLYPKMKVGEQLVYLARLKGL-SKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 163 EPTVGLDPE--QRMR--FRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGRVW 232
Cdd:COG4152 155 EPFSGLDPVnvELLKdvIRELAA---KGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTL 225
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
5-224 |
2.77e-56 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 180.78 E-value: 2.77e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTR--ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgrQEVRRRLG 81
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGeIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR--KAARQSLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL-LRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 162 DEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELT 224
Cdd:cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-222 |
3.13e-55 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 178.74 E-value: 3.13e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGssrgrqEVRRR 79
Cdd:COG1121 3 MMPAIELENLTVSYGGRPVLEDVSLTIPPGeFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR------RARRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDF--TAFEFVD------------YVAILKELADRRerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQR 145
Cdd:COG1121 77 IGYVPQRAEVDWDFpiTVRDVVLmgrygrrglfrrPSRADREAVDEA---------LERVGLEDLADRPIGELSGGQQQR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGaVRFDGTPAE 222
Cdd:COG1121 148 VLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEE 224
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-225 |
1.04e-54 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 177.54 E-value: 1.04e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYL 83
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGeVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL-ASLSRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFV-----------------DYVAILKeladrrerhrevrrVLEEVDLGEVRGRRIKKLSGGMRQRV 146
Cdd:COG1120 81 PQEPPAPFGLTVRELValgryphlglfgrpsaeDREAVEE--------------ALERTGLEHLADRPVDELSGGERQRV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 147 ALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE-L 223
Cdd:COG1120 147 LIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEvL 226
|
..
gi 7636021 224 TA 225
Cdd:COG1120 227 TP 228
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
5-223 |
2.23e-54 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 175.98 E-value: 2.23e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY-GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGY 82
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGeFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDI-TKKNLRELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPG---FHPdfTAFEFVDY--------VAILKELADRRerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAA 151
Cdd:COG1122 80 VFQNPDdqlFAP--TVEEDVAFgpenlglpREEIRERVEEA---------LELVGLEHLADRPPHELSGGQKQRVAIAGV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 152 LVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:COG1122 149 LAMEPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
5-218 |
6.36e-53 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 171.63 E-value: 6.36e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSrgrQEVRRRLGYL 83
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGeIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IEALRRIGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFVDYVAILKELADRRERHRevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEV-----LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 164 PTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03268 153 PTNGLDPDGIKELRELILSlRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-223 |
6.13e-52 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 169.47 E-value: 6.13e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgSSRGRQEVRRRLGYL 83
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGeIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD--VVREPREVRRRIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03265 79 FQDLSVDDELTGWENLYIHARLYGVP-GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 164 PTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:cd03265 158 PTIGLDPQTRAHVWEYIEKlkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
6-217 |
1.69e-51 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 168.10 E-value: 1.69e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGssrgrqEVRRRLGYLP 84
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGeFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------KERKRIGYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDF--TAFEFV------------DYVAILKELADRRerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAA 150
Cdd:cd03235 75 QRRSIDRDFpiSVRDVVlmglyghkglfrRLSKADKAKVDEA---------LERVGLSELADRQIGELSGGQQQRVLLAR 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 151 ALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFD 217
Cdd:cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRElRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
13-239 |
8.23e-51 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 169.11 E-value: 8.23e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 13 HYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgSSRGRQEVRRRLGYLPQTPGFHP 91
Cdd:TIGR01188 2 VYGDFKAVDGVNFKVREGeVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD--VVREPRKVRRSIGIVPQYASVDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:TIGR01188 80 DLTGRENLEMMGRLYGLP-KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 172 QRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGRVWSSTEKDP 239
Cdd:TIGR01188 159 TRRAIWDYIRAlKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDI 227
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
3-213 |
2.20e-50 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 164.96 E-value: 2.20e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGafTVLGHDPGSSRGRQEVRRRLG 81
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGeALALTGPNGSGKTTLLRILAGLLPPSAG--EVLWNGEPIRDAREDYRRRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDFTAFEFVDYVAILKELAdrrERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALYGLR---ADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 162 DEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQteDVAMLCHRVIVMAAGA 213
Cdd:COG4133 156 DEPFTALDAAGVALLAELIAAhLARGGAVLLTTHQ--PLELAAARVLDLGDFK 206
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-218 |
4.42e-49 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 161.68 E-value: 4.42e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSsrgrqEVRRRLGYL 83
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGeIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-----AARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLK-KEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 164 PTVGLDPEQRMRFRELI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03269 155 PFSGLDPVNVELLKDVIrELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
15-218 |
1.57e-48 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 160.61 E-value: 1.57e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgSSRGRQEVRRRLGYLPQTPGFHPDF 93
Cdd:cd03266 16 KTVQAVDGVSFTVKPGeVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VVKEPAEARRRLGFVSDSTGLYDRL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEFVDYVAILKELAdrrerHREVRRVLEEV----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:cd03266 94 TARENLEYFAGLYGLK-----GDELTARLEELadrlGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 170 PEQRMRFRELI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03266 169 VMATRALREFIrQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
6-218 |
1.25e-47 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 157.21 E-value: 1.25e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLP 84
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGeIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-ASLSPKELARKIAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QtpgfhpdftafefvdyvailkeladrrerhrevrrVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:cd03214 80 Q-----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 165 TVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03214 125 TSHLDIAHQIELLELLRrlARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
6-212 |
2.88e-47 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 157.24 E-value: 2.88e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGR--TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRqEVRRRLGY 82
Cdd:cd03225 1 ELKNLSFSYPDgaRPALDDISLTIKKGeFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLK-ELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQtpgfHPD---FTAfefvdyvAILKELA--------DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAA 151
Cdd:cd03225 80 VFQ----NPDdqfFGP-------TVEEEVAfglenlglPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 152 LVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
3-227 |
6.24e-47 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 157.53 E-value: 6.24e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY-GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGR--QEVRR 78
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGeFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRalRRLRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 79 RLGYLPQTPGFHPDFTAFEFV-----DYVAIL-----------KELAdrrerhrevRRVLEEVDLGEVRGRRIKKLSGGM 142
Cdd:COG3638 81 RIGMIFQQFNLVPRLSVLTNVlagrlGRTSTWrsllglfppedRERA---------LEALERVGLADKAYQRADQLSGGQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 143 RQRVALAAALVGDPGFLVLDEPTVGLDP---EQRMR-FRELiaGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:COG3638 152 QQRVAIARALVQEPKLILADEPVASLDPktaRQVMDlLRRI--AREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDG 229
|
....*....
gi 7636021 219 TPAELTARA 227
Cdd:COG3638 230 PPAELTDAV 238
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-212 |
3.92e-45 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 150.09 E-value: 3.92e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLP 84
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGeIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AKLPLEELRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QtpgfhpdftafefvdyvailkeladrrerhrevrrvleevdlgevrgrrikkLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:cd00267 80 Q----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 7636021 165 TVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:cd00267 108 TSGLDPASRERLLELLRElAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-209 |
6.98e-45 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 151.10 E-value: 6.98e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYG----RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRGRQEVR 77
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGeFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISklSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RR-LGYLPQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDP 156
Cdd:cd03255 81 RRhIGFVFQSFNLLPDLTALENVELPLLLAGVP-KKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 157 GFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQtEDVAMLCHRVIVM 209
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRElnKEAGTTIVVVTHD-PELAEYADRIIEL 213
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-223 |
7.57e-44 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 155.83 E-value: 7.57e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHY-----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD--PGSSRGR 73
Cdd:COG1123 258 EPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGeTLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDltKLSRRSL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 74 QEVRRRLGYLPQTPG--FHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLG-EVRGRRIKKLSGGMRQRVALAA 150
Cdd:COG1123 338 RELRRRVQMVFQDPYssLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPpDLADRYPHELSGGQRQRVAIAR 417
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 151 ALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:COG1123 418 ALALEPKLLILDEPTSALDVSVQAQILNLLRDlqRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-214 |
4.25e-42 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 144.42 E-value: 4.25e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYG----RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRGR 73
Cdd:COG1136 1 MSPLLELRNLTKSYGtgegEVTALRGVSLSIEAGeFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISslSEREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 74 QEVRRR-LGYLPQTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL 152
Cdd:COG1136 81 ARLRRRhIGFVFQFFNLLPELTALENVALPLLLAGV-SRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 153 VGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQtEDVAMLCHRVIVMAAGAV 214
Cdd:COG1136 160 VNRPKLILADEPTGNLDSKTGEEVLELLRElnRELGTTIVMVTHD-PELAARADRVIRLRDGRI 222
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-225 |
2.95e-41 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 142.43 E-value: 2.95e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD--PGSSRGRQEVR 77
Cdd:COG1127 2 SEPMIEVRNLTKSFGDRVVLDGVSLDVPRGeILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitGLSEKELYELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPGFHPDFTAFEFVDY---------VAILKELADRRerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVAL 148
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENVAFplrehtdlsEAEIRELVLEK---------LELVGLPGAADKMPSELSGGMRKRVAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 149 AAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:COG1127 153 ARALALDPEILLYDEPTAGLDPITSAVIDELIRElrDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
9-231 |
7.94e-41 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 141.55 E-value: 7.94e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGR-TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGR--QEVRRRLGYLP 84
Cdd:cd03256 5 NLSKTYPNgKKALKDVSLSINPGeFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKalRQLRRQIGMIF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFE-----FVDYVAILKELADRRERH--REVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPG 157
Cdd:cd03256 85 QQFNLIERLSVLEnvlsgRLGRRSTWRSLFGLFPKEekQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 158 FLVLDEPTVGLDP---EQRMRFRELIAGAgEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGRV 231
Cdd:cd03256 165 LILADEPVASLDPassRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-222 |
1.01e-39 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 138.34 E-value: 1.01e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGYLP 84
Cdd:cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGeIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRV---------LEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEReareraeelLERVGLADLADRPAGELSYGQQRRLEIARALATD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 156 PGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-222 |
1.17e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 139.02 E-value: 1.17e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRR 79
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGeIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFE--------------FVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQR 145
Cdd:COG0411 81 IARTFQNPRLFPELTVLEnvlvaaharlgrglLAALLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRlrDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAE 239
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
9-214 |
1.26e-39 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 137.65 E-value: 1.26e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGssrGRQEVRRRLGYLPQTP 87
Cdd:cd03259 5 GLSKTYGSVRALDDLSLTVEPGeFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT---GVPPERRNIGMVFQDY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 GFHPDFTAFEFVDYVaiLKELA-DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTV 166
Cdd:cd03259 82 ALFPHLTVAENIAFG--LKLRGvPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 167 GLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:cd03259 160 ALDAKLREELREELKElqRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-227 |
3.51e-39 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 137.24 E-value: 3.51e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYG----RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRqEVRRR 79
Cdd:COG1124 2 LEVRNLSVSYGqggrRVPVLKDVSLEVAPGeSFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRK-AFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPG--FHPDFTafefVDyvAILKE---LADRRERHREVRRVLEEVDLG-EVRGRRIKKLSGGMRQRVALAAALV 153
Cdd:COG1124 81 VQMVFQDPYasLHPRHT----VD--RILAEplrIHGLPDREERIAELLEQVGLPpSFLDRYPHQLSGGQRQRVAIARALI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 154 GDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARA 227
Cdd:COG1124 155 LEPELLLLDEPTSALDVSVQAEILNLLKDlrEERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGP 230
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-214 |
3.76e-39 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 136.87 E-value: 3.76e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD--PGSSRGRQEVR 77
Cdd:cd03257 2 LEVKNLSVSFptggGSVKALDDVSFSIKKGeTLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDllKLSRRLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPG--FHPDFTAFE-FVDYVAILKELADRRERHREVRRVLEEVDLGE-VRGRRIKKLSGGMRQRVALAAALV 153
Cdd:cd03257 82 KEIQMVFQDPMssLNPRMTIGEqIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARALA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 154 GDPGFLVLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEelGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-228 |
4.61e-39 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 145.27 E-value: 4.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGYL 83
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMvGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADARHRRAVCPRIAYM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPG--FHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:NF033858 82 PQGLGknLYPTLSVFENLDFFGRLFGQ-DAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 162 DEPTVGLDPEQRMRFRELIAGAGEGR---TVLLSTHQTEDvAMLCHRVIVMAAGAVRFDGTPAELTARAA 228
Cdd:NF033858 161 DEPTTGVDPLSRRQFWELIDRIRAERpgmSVLVATAYMEE-AERFDWLVAMDAGRVLATGTPAELLARTG 229
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-229 |
4.84e-39 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 143.12 E-value: 4.84e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY--GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAD---RGAFTVLGHDPGSSRgRQ 74
Cdd:COG1123 1 MTPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGeTVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELS-EA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 EVRRRLGYLPQTPG--FHPDFTAFEFVDyvAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL 152
Cdd:COG1123 80 LRGRRIGMVFQDPMtqLNPVTVGDQIAE--ALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 153 VGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAG 229
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRElqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQA 236
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-225 |
7.71e-39 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 136.78 E-value: 7.71e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRlGYLP 84
Cdd:COG4559 3 EAENLSVRLGGRTLLDDVSLTLRPGeLTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRR-AVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVdyvailkEL------ADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALV----- 153
Cdd:COG4559 82 QHSSLAFPFTVEEVV-------ALgraphgSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwep 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 154 --GDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHqteDV---AMLCHRVIVMAAGAVRFDGTPAE-LTA 225
Cdd:COG4559 155 vdGGPRWLFLDEPTSALDLAHQHAVLRLARQlARRGGGVVAVLH---DLnlaAQYADRILLLHQGRLVAQGTPEEvLTD 230
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-229 |
9.41e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 138.01 E-value: 9.41e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQeVRRR 79
Cdd:PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGeCFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG-EPVPSRARH-ARQR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFE----FVDYVAIlkelaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:PRK13537 82 VGVVPQFDNLDPDFTVREnllvFGRYFGL-----SAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 156 PGFLVLDEPTVGLDPEQRM----RFRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAG 229
Cdd:PRK13537 157 PDVLVLDEPTTGLDPQARHlmweRLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIG 231
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
3-232 |
2.29e-38 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 135.67 E-value: 2.29e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRlG 81
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGeVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR-A 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTP--GFhpDFTAFEFV--------DYVAILKELADrrerhrevrRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAA 151
Cdd:PRK13548 80 VLPQHSslSF--PFTVEEVVamgraphgLSRAEDDALVA---------AALAQVDLAHLAGRDYPQLSGGEQQRVQLARV 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 152 LV------GDPGFLVLDEPTVGLDP---EQRMRF-RELIAGAGEGRTVLLstHQTEDVAMLCHRVIVMAAGAVRFDGTPA 221
Cdd:PRK13548 149 LAqlwepdGPPRWLLLDEPTSALDLahqHHVLRLaRQLAHERGLAVIVVL--HDLNLAARYADRIVLLHQGRLVADGTPA 226
|
250
....*....|..
gi 7636021 222 E-LTARAAGRVW 232
Cdd:PRK13548 227 EvLTPETLRRVY 238
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
2-223 |
3.44e-38 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 134.83 E-value: 3.44e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHYGRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRvLATAV--PADRGAFTVLGHDpgssRGR---QE 75
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEhWAILGPNGAGKSTLLS-LITGDlpPTYGNDVRLFGER----RGGedvWE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRRRLGYLpqTPGFHPDF----TAFE------------FVDYVAILKELADRRerhrevrrvLEEVDLGEVRGRRIKKLS 139
Cdd:COG1119 76 LRKRIGLV--SPALQLRFprdeTVLDvvlsgffdsiglYREPTDEQRERAREL---------LELLGLAHLADRPFGTLS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 140 GGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEG-RTVLLSTHQTEDVAMLCHRVIVMAAGAVRFD 217
Cdd:COG1119 145 QGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKlAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGRVVAA 224
|
....*.
gi 7636021 218 GTPAEL 223
Cdd:COG1119 225 GPKEEV 230
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-225 |
5.93e-38 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 133.33 E-value: 5.93e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGYLP 84
Cdd:cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGeIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVdyvailkELADRRERHREVRRVLEEV-----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:cd03224 82 EGRRIFPELTVEENL-------LLGAYARRRAKRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 160 VLDEPTVGLDP--EQRMrFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:cd03224 155 LLDEPSEGLAPkiVEEI-FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-212 |
1.05e-37 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 132.25 E-value: 1.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGrQEVRRRLGYLP 84
Cdd:COG4619 2 ELEGLSFRVGGKPILSPVSLTLEAGeCVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPP-PEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDfTAFEFVDYVAILKELADRRERHREVrrvLEEVDLGE-VRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:COG4619 81 QEPALWGG-TVRDNLPFPFQLRERKFDRERALEL---LERLGLPPdILDKPVERLSGGERQRLALIRALLLQPDVLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 7636021 164 PTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:COG4619 157 PTSALDPENTRRVEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAG 207
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-212 |
2.22e-37 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 132.91 E-value: 2.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgssrgrQE 75
Cdd:COG1116 4 AAPALELRGVSKRFptggGGVTALDDVSLTVAAGeFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV------TG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRRRLGYLPQTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:COG1116 78 PGPDRGVVFQEPALLPWLTVLDNVALGLELRGV-PKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAND 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 156 PGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:COG1116 157 PEVLLMDEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
20-166 |
3.28e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 129.30 E-value: 3.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPGFHPDFTAFEF 98
Cdd:pfam00005 1 LKNVSLTLNPGeILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDL-TDDERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 99 VDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKK----LSGGMRQRVALAAALVGDPGFLVLDEPTV 166
Cdd:pfam00005 80 LRLGLLLKGLSKREKDARAEEA-LEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
5-211 |
4.42e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 131.05 E-value: 4.42e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYG----RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhdpgssRGRQEVRRR 79
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGeFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG------EPVTGPGPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFefvDYVAILKELADRRERHREV--RRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPG 157
Cdd:cd03293 75 RGYVFQQDALLPWLTVL---DNVALGLELQGVPKAEAREraEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 158 FLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAA 211
Cdd:cd03293 152 VLLLDEPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
8-212 |
4.63e-37 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 129.61 E-value: 4.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGS-SRGRQEVRRRLGYLPQ 85
Cdd:cd03229 4 KNVSKRYGQKTVLNDVSLNIEAGeIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDlEDELPPLRRRIGMVFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAFEFVDYVailkeladrrerhrevrrvleevdlgevrgrrikkLSGGMRQRVALAAALVGDPGFLVLDEPT 165
Cdd:cd03229 84 DFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 7636021 166 VGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:cd03229 129 SALDPITRREVRALLKSlqAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
3-226 |
4.82e-37 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 137.97 E-value: 4.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY-GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRL 80
Cdd:COG4988 335 PSIELEDVSFSYpGGRPALDGLSLTIPPGeRVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDL-SDLDPASWRRQI 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQTPG-FH-----------PDFTAFEFVDyvAIlkELADRRERHREVRRVLEEVdLGEvRGRRikkLSGGMRQRVAL 148
Cdd:COG4988 414 AWVPQNPYlFAgtirenlrlgrPDASDEELEA--AL--EAAGLDEFVAALPDGLDTP-LGE-GGRG---LSGGQAQRLAL 484
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 149 AAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAmLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:COG4988 485 ARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLA-QADRILVLDDGRIVEQGTHEELLAK 561
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-225 |
1.75e-36 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 129.93 E-value: 1.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD--PGSSRGRQEVRRRLG 81
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGeILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDisGLSEAELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDFTAFEFVDYVaiLKELADRRER--HREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFP--LREHTRLSEEeiREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRslKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
5-222 |
4.22e-36 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 128.63 E-value: 4.22e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTR-ALDDVSLRLTPG----VTGllgPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQ--EVR 77
Cdd:COG2884 2 IRFENVSKRYPGGReALSDVSLEIEKGefvfLTG---PSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREipYLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPGFHPDFTAFEFVDYVAILKElADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPG 157
Cdd:COG2884 79 RRIGVVFQDFRLLPDRTVYENVALPLRVTG-KSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 158 FLVLDEPTVGLDPEQRMR----FRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:COG2884 158 LLLADEPTGNLDPETSWEimelLEEINR---RGTTVLIATHDLELVDRMPKRVLELEDGRLVRDEARGV 223
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
8-223 |
9.96e-36 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 130.72 E-value: 9.96e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQeVRRRLGYLPQT 86
Cdd:PRK13536 45 AGVSKSYGDKAVVNGLSFTVASGeCFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG-VPVPARARL-ARARIGVVPQF 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 PGFHPDFTAFE----FVDYVAIlkelaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13536 123 DNLDLEFTVREnllvFGRYFGM-----STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 163 EPTVGLDPEQRM----RFRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13536 198 EPTTGLDPHARHliweRLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1-226 |
1.04e-35 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 135.35 E-value: 1.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTR--ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVR 77
Cdd:COG2274 470 LKGDIELENVSFRYPGDSppVLDNISLTIKPGeRVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDL-RQIDPASLR 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTP------------GFHPDFTaFEFVDYVAILKELADrrerhrevrrvleEVD---------LGEvRGRRik 136
Cdd:COG2274 549 RQIGVVLQDVflfsgtirenitLGDPDAT-DEEIIEAARLAGLHD-------------FIEalpmgydtvVGE-GGSN-- 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 kLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEdVAMLCHRVIVMAAGAVRF 216
Cdd:COG2274 612 -LSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHRLS-TIRLADRIIVLDKGRIVE 689
|
250
....*....|
gi 7636021 217 DGTPAELTAR 226
Cdd:COG2274 690 DGTHEELLAR 699
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
6-214 |
2.94e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 125.83 E-value: 2.94e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGR-TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGafTVLGHdpGSSRGRQEVRRRLGYL 83
Cdd:cd03226 1 RIENISFSYKKgTEILDDLSLDLYAGeIIALTGKNGAGKTTLAKILAGLIKESSG--SILLN--GKPIKAKERRKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHpdftafEFVDYVA--ILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:cd03226 77 MQDVDYQ------LFTDSVReeLLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 162 DEPTVGLDPEqRMR-----FRELiagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:cd03226 151 DEPTSGLDYK-NMErvgelIREL---AAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
17-223 |
8.54e-35 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 126.80 E-value: 8.54e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRG--RQEVRRRLGYLPQtpgfHPDF 93
Cdd:TIGR04521 18 KKALDDVSLTIEDGeFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKkkLKDLRKKVGLVFQ----FPEH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEfvdyVAILKELA--------DRRERHREVRRVLEEVDLGE-VRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:TIGR04521 94 QLFE----ETVYKDIAfgpknlglSEEEAEERVKEALELVGLDEeYLERSPFELSGGQMRRVAIAGVLAMEPEVLILDEP 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 165 TVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:TIGR04521 170 TAGLDPKGRKEILDLFKRlhKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREV 230
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
9-226 |
1.25e-34 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 127.96 E-value: 1.25e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEvrRRLGYLPQTP 87
Cdd:COG1118 7 NISKRFGSFTLLDDVSLEIASGeLVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPPRE--RRVGFVFQHY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 GFHPDFTAFEFV------------DYVAILKELadrrerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:COG1118 85 ALFPHMTVAENIafglrvrppskaEIRARVEEL-------------LELVQLEGLADRYPSQLSGGQRQRVALARALAVE 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 156 PGFLVLDEPTVGLD----PEQRMRFRELIagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:COG1118 152 PEVLLLDEPFGALDakvrKELRRWLRRLH--DELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDR 224
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
9-232 |
2.83e-34 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 124.33 E-value: 2.83e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGR-TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGR--QEVRRRLGYLP 84
Cdd:TIGR02315 6 NLSKVYPNgKQALKNINLNINPGeFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKklRKLRRRIGMIF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFE-----FVDYVAILKEL------ADRRERHREvrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALV 153
Cdd:TIGR02315 86 QHYNLIERLTVLEnvlhgRLGYKPTWRSLlgrfseEDKERALSA----LERVGLADKAYQRADQLSGGQQQRVAIARALA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 154 GDPGFLVLDEPTVGLDPE---QRMR-FRELiaGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAG 229
Cdd:TIGR02315 162 QQPDLILADEPIASLDPKtskQVMDyLKRI--NKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLR 239
|
...
gi 7636021 230 RVW 232
Cdd:TIGR02315 240 HIY 242
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-226 |
3.90e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 130.27 E-value: 3.90e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY--GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRR 79
Cdd:COG4987 332 PSLELEDVSFRYpgAGRPVLDGLSLTLPPGeRVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDL-RDLDEDDLRRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFhpdftafeFVDYVA--ILkeLADRRERHREVRRVLEEVDLGEV--------------RGRRikkLSGGMR 143
Cdd:COG4987 411 IAVVPQRPHL--------FDTTLRenLR--LARPDATDEELWAALERVGLGDWlaalpdgldtwlgeGGRR---LSGGER 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 144 QRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAmLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:COG4987 478 RRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEEL 556
|
...
gi 7636021 224 TAR 226
Cdd:COG4987 557 LAQ 559
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-223 |
6.84e-34 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 126.37 E-value: 6.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-----PGssrgrq 74
Cdd:COG3842 2 AMPALELENVSKRYGDVTALDDVSLSIEPGeFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDvtglpPE------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 evRRRLGYLPQTPGFHPDFTAFEFVDY---------VAILKELADRrerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQR 145
Cdd:COG3842 76 --KRNVGMVFQDYALFPHLTVAENVAFglrmrgvpkAEIRARVAEL----------LELVGLEGLADRYPHQLSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTH-QTEdvAM-LCHRVIVMAAGAVRFDGTPA 221
Cdd:COG3842 144 VALARALAPEPRVLLLDEPLSALDAKLREEMREELRRlqRELGITFIYVTHdQEE--ALaLADRIAVMNDGRIEQVGTPE 221
|
..
gi 7636021 222 EL 223
Cdd:COG3842 222 EI 223
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
15-218 |
3.11e-33 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 120.35 E-value: 3.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLA--TAVPADRGAFTVLGHdpgsSRGRQEVRRRLGYLPQTPGFHP 91
Cdd:cd03213 20 SGKQLLKNVSGKAKPGeLTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGR----PLDKRSFRKIIGYVPQDDILHP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEFVDYVAilkeladrrerhrevrrvleevdlgevrgrRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP- 170
Cdd:cd03213 96 TLTVRETLMFAA------------------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSs 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 171 --EQRMR-FRELiagAGEGRTVLLSTHQ-TEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03213 146 saLQVMSlLRRL---ADTGRTIICSIHQpSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
2-228 |
3.38e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 121.24 E-value: 3.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRL 80
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGeIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQTPGFHPDFT--------AFefvdyvailkeladRRERHREVRRVLEEV-----DLGEVRGRRIKKLSGGMRQRVA 147
Cdd:COG0410 81 GYVPEGRRIFPSLTveenlllgAY--------------ARRDRAEVRADLERVyelfpRLKERRRQRAGTLSGGEQQMLA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 148 LAAALVGDPGFLVLDEPTVGLDP---EQRMR-FRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:COG0410 147 IGRALMSRPKLLLLDEPSLGLAPlivEEIFEiIRRLNR---EGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAEL 223
|
....*
gi 7636021 224 TARAA 228
Cdd:COG0410 224 LADPE 228
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
18-218 |
6.82e-33 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 120.45 E-value: 6.82e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpGSSRGRQEVRRRLGYLPQTPGFHPDFTAF 96
Cdd:cd03234 21 RILNDVSLHVESGqVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFN-GQPRKPDQFQKCVAYVRQDDILLPGLTVR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 97 EFVDYVAILK---ELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP--- 170
Cdd:cd03234 100 ETLTYTAILRlprKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSfta 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 171 EQRMRF-RELiagAGEGRTVLLSTHQ-TEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03234 180 LNLVSTlSQL---ARRNRIVILTIHQpRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
5-223 |
9.91e-33 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 119.98 E-value: 9.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLA---TAVPADRGAFTVL--GHD-PGSSRGRQEVR 77
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGeITALIGPSGCGKSTLLRLLNrlnDLIPGAPDEGEVLldGKDiYDLDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPG-FHpdFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIK--KLSGGMRQRVALAAALVG 154
Cdd:cd03260 81 RRVGMVFQKPNpFP--GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHalGLSGGQQQRLCLARALAN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 155 DPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
9-218 |
1.89e-32 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 119.04 E-value: 1.89e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgssRGRQEVRRrLGYLPQTP 87
Cdd:TIGR03740 5 NLSKRFGKQTAVNNISLTVPKNsVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP----WTRKDLHK-IGSLIESP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 GFHPDFTAFEFVDYVAILKELADRRERHRevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVG 167
Cdd:TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEV-----LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 168 LDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:TIGR03740 155 LDPIGIQELRELIRSfPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
18-226 |
2.05e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 121.73 E-value: 2.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgsSRGRQEVRRRLG-----------YLPQ 85
Cdd:COG4586 36 EAVDDISFTIEPGeIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVP--FKRRKEFARRIGvvfgqrsqlwwDLPA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFH--------PDftafefVDYVAILKELAdrrerhrevrrvlEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPG 157
Cdd:COG4586 114 IDSFRllkaiyriPD------AEYKKRLDELV-------------ELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPK 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 158 FLVLDEPTVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:COG4586 175 ILFLDEPTIGLDVVSKEAIREFLKeyNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
18-218 |
2.36e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 119.36 E-value: 2.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgrQEVRRRLGY-----------LPQ 85
Cdd:cd03267 35 EALKGISFTIEKGeIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR--KKFLRRIGVvfgqktqlwwdLPV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGF--HPDFTAFEFVDYVAILKELADRrerhrevrrvleeVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03267 113 IDSFylLAAIYDLPPARFKKRLDELSEL-------------LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 164 PTVGLDPEQRMRFRELI--AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03267 180 PTIGLDVVAQENIRNFLkeYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-223 |
5.02e-32 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 118.56 E-value: 5.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-PGSSRGRQEVRRRLGY 82
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGeVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDlTDSKKDINKLRRKVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQtpGFH--PDFTAFEFVDY--VAILK-------ELAdrrerhrevRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAA 151
Cdd:COG1126 82 VFQ--QFNlfPHLTVLENVTLapIKVKKmskaeaeERA---------MELLERVGLADKADAYPAQLSGGQQQRVAIARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 152 LVGDPGFLVLDEPTVGLDPE------QRMrfRELiagAGEGRTVLLSTHQ---TEDVAmlcHRVIVMAAGAVRFDGTPAE 222
Cdd:COG1126 151 LAMEPKVMLFDEPTSALDPElvgevlDVM--RDL---AKEGMTMVVVTHEmgfAREVA---DRVVFMDGGRIVEEGPPEE 222
|
.
gi 7636021 223 L 223
Cdd:COG1126 223 F 223
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
13-222 |
3.91e-31 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 116.33 E-value: 3.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 13 HYGRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGafTVlghdpgssrgrqEVRRRLGYL--PQTpGF 89
Cdd:COG1134 35 RREEFWALKDVSFEVERGESvGIIGRNGAGKSTLLKLIAGILEPTSG--RV------------EVNGRVSALleLGA-GF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 HPDFTAFEFVDYVAIL-----KELADRrerhrevrrvLEEV----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLV 160
Cdd:COG1134 100 HPELTGRENIYLNGRLlglsrKEIDEK----------FDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 161 LDEPT-VGlDPE-QR---MRFRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:COG1134 170 VDEVLaVG-DAAfQKkclARIRELRE---SGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEE 232
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-169 |
9.27e-31 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 120.17 E-value: 9.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 7 ASGLSLHYGRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVlghDPGSsrgrqevrrRLGYLPQ 85
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDrIGLVGRNGAGKSTLLKILAGELEPDSGEVSI---PKGL---------RIGYLPQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAFEFV-----DYVAILKELADRRERHREVRRVLEEVD------------------------LG---EVRGR 133
Cdd:COG0488 69 EPPLDDDLTVLDTVldgdaELRALEAELEELEAKLAEPDEDLERLAelqeefealggweaearaeeilsgLGfpeEDLDR 148
|
170 180 190
....*....|....*....|....*....|....*.
gi 7636021 134 RIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:COG0488 149 PVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD 184
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
5-212 |
1.18e-30 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 112.86 E-value: 1.18e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYG--RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpGSSRGRQEVRRRLG 81
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGeKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-LRDLDLESLRKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDftafefvdyvAILKELadrrerhrevrrvleevdlgevrgrrikkLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:cd03228 80 YVPQDPFLFSG----------TIRENI-----------------------------LSGGQRQRIAIARALLRDPPILIL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 7636021 162 DEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMlCHRVIVMAAG 212
Cdd:cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDG 170
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
5-225 |
1.29e-30 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 114.56 E-value: 1.29e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSSRGRqevrRR 79
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGeIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDitklPMHKRAR----LG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIA-----GAGegrtVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:cd03218 156 LLDEPFAGVDPIAVQDIQKIIKilkdrGIG----VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
3-225 |
1.64e-30 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 114.36 E-value: 1.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSSRGRqevr 77
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGeIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDithlPMHKRAR---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPGFHPDFTAFEFVDyvAILkELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:COG1137 78 LGIGYLPQEASIFRKLTVEDNIL--AVL-ELRklSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATN 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 156 PGFLVLDEPTVGLDPEQRMRFRELIA-----GAGegrtVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:COG1137 155 PKFILLDEPFAGVDPIAVADIQKIIRhlkerGIG----VLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILN 225
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-214 |
2.91e-30 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 111.75 E-value: 2.91e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdPGSSRGRQEVRRR-LGY 82
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGeVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK-EVSFASPRDARRAgIAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQtpgfhpdftafefvdyvailkeladrrerhrevrrvleevdlgevrgrrikkLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:cd03216 80 VYQ----------------------------------------------------LSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 163 EPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:cd03216 108 EPTAALTPAEVERLFKVIRRlRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
13-226 |
3.02e-30 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 113.44 E-value: 3.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 13 HYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQ--EVRRRLGYLPQTPGF 89
Cdd:cd03258 14 TGGKVTALKDVSLSVPKGeIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKElrKARRRIGMIFQHFNL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 HPDFTAFEfvdYVAILKELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVG 167
Cdd:cd03258 94 LSSRTVFE---NVALPLEIAgvPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 168 LDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:cd03258 171 LDPETTQSILALLRDINRelGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
4-225 |
4.30e-30 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 113.52 E-value: 4.30e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGY 82
Cdd:TIGR04406 1 TLVAENLIKSYKKRKVVNDVSLSVKSGeIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMAVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIKHLKErGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
5-223 |
5.81e-30 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 113.68 E-value: 5.81e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY--GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLG 81
Cdd:TIGR04520 1 IEVENVSFSYpeSEKPALKNVSLSIEKGeFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDEENLWEIRKKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQtpgfHPDFtafEFV-----DYVA------------ILKELADRrerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQ 144
Cdd:TIGR04520 81 MVFQ----NPDN---QFVgatveDDVAfglenlgvpreeMRKRVDEA----------LKLVGMEDFRDREPHLLSGGQKQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 145 RVALAAALVGDPGFLVLDEPTVGLDPEQRmrfRELIA-----GAGEGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGT 219
Cdd:TIGR04520 144 RVAIAGVLAMRPDIIILDEATSMLDPKGR---KEVLEtirklNKEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEGT 219
|
....
gi 7636021 220 PAEL 223
Cdd:TIGR04520 220 PREI 223
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-223 |
5.91e-30 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 113.25 E-value: 5.91e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRqEVRRRLGYL 83
Cdd:COG4604 2 IEIKNVSKRYGGKVVLDDVSLTIPKGgITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSR-ELAKRLAIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFV---------------DYVAIlkELAdrrerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVAL 148
Cdd:COG4604 81 RQENHINSRLTVRELVafgrfpyskgrltaeDREII--DEA------------IAYLDLEDLADRYLDELSGGQRQRAFI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 149 AAALVGDPGFLVLDEPTVGLDPE---QRMR-FRELiagAGE-GRTVLLSTHqteDV---AMLCHRVIVMAAGAVRFDGTP 220
Cdd:COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKhsvQMMKlLRRL---ADElGKTVVIVLH---DInfaSCYADHIVAMKDGRVVAQGTP 220
|
...
gi 7636021 221 AEL 223
Cdd:COG4604 221 EEI 223
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-214 |
1.41e-29 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 111.76 E-value: 1.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHYGRTRA----LDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD--PGSSRGRQ 74
Cdd:COG4181 6 APIIELRGLTKTVGTGAGeltiLKGISLEVEAGESvAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDlfALDEDARA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 EVRRR-LGYLPQTpgFH--PDFTAFEfvdYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAA 151
Cdd:COG4181 86 RLRARhVGFVFQS--FQllPTLTALE---NVMLPLELAGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 152 LVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDvAMLCHRVIVMAAGAV 214
Cdd:COG4181 161 FATEPAILFADEPTGNLDAATGEQIIDLLFElnRERGTTLVLVTHDPAL-AARCDRVLRLRAGRL 224
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
4-223 |
2.75e-29 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 111.28 E-value: 2.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpGSSRGRQEvrRRLGY 82
Cdd:cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGeLVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGED-ATDVPVQE--RNVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFEFVDY---VAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:cd03296 79 VFQHYALFRHMTVFDNVAFglrVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDelHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
4-225 |
6.17e-29 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 110.37 E-value: 6.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGY 82
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGeIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDsGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-209 |
9.16e-29 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 114.69 E-value: 9.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY-GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAfTVLGHDPGSSRGRQEVRRRL 80
Cdd:TIGR02857 320 SSLEFSGVSVAYpGRRPALRPVSFTVPPGeRVALVGPSGAGKSTLLNLLLGFVDPTEGS-IAVNGVPLADADADSWRDQI 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQTPGFHPDFTAFEFvdyvailkELADRRERHREVRRVLEEVDLGEVR-----------GRRIKKLSGGMRQRVALA 149
Cdd:TIGR02857 399 AWVPQHPFLFAGTIAENI--------RLARPDASDAEIREALERAGLDEFVaalpqgldtpiGEGGAGLSGGQAQRLALA 470
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAmLCHRVIVM 209
Cdd:TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA-LADRIVVL 529
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
19-218 |
1.22e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 109.22 E-value: 1.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPG--------- 88
Cdd:cd03245 19 ALDNVSLTIRAGeKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI-RQLDPADLRRNIGYVPQDVTlfygtlrdn 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 ---FHPdftafeFVDYVAILK--ELADRRERHREVRRVLEeVDLGEvRGRrikKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03245 98 itlGAP------LADDERILRaaELAGVTDFVNKHPNGLD-LQIGE-RGR---GLSGGQRQAVALARALLNDPPILLLDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 164 PTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTedvAML--CHRVIVMAAGAVRFDG 218
Cdd:cd03245 167 PTSAMDMNSEERLKERLRQLLGDKTLIIITHRP---SLLdlVDRIIVMDSGRIVADG 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
10-233 |
2.11e-28 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 109.33 E-value: 2.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQeVRRRLGYLPQTPG 88
Cdd:PRK11231 8 LTVGYGTKRILNDLSLSLPTGkITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ-LARRLALLPQHHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 FHPDFTAFEFVDY-----VAILKELADRRERHREVRrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:PRK11231 87 TPEGITVRELVAYgrspwLSLWGRLSAEDNARVNQA--MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 164 PTVGLDPEQR---MRF-RELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE-LTARAAGRVWS 233
Cdd:PRK11231 165 PTTYLDINHQvelMRLmRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEvMTPGLLRTVFD 236
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
5-223 |
4.12e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 108.09 E-value: 4.12e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG--VTgLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSsrgrqevRR 78
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGefFT-LLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDitnlPPH-------KR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 79 RLGYLPQTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGF 158
Cdd:cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKL-PKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 159 LVLDEPTVGLDPEQR--MRF------RELiagageGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:cd03300 152 LLLDEPLGALDLKLRkdMQLelkrlqKEL------GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
10-212 |
5.06e-28 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 107.33 E-value: 5.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGR-TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQ--EVRRRLGYLPQ 85
Cdd:TIGR02673 7 VSKAYPGgVAALHDVSLHIRKGeFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQlpLLRRRIGVVFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAFEfvdYVAILKELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:TIGR02673 87 DFRLLPDRTVYE---NVALPLEVRgkKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 164 PTVGLDP---EQRMR-FRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:TIGR02673 164 PTGNLDPdlsERILDlLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
11-223 |
7.78e-28 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 107.49 E-value: 7.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 11 SLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-PGSSRGRQEVRRRLGYLPQTPG 88
Cdd:PRK09493 8 SKHFGPTQVLHNIDLNIDQGeVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKvNDPKVDERLIRQEAGMVFQQFY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 FHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL 168
Cdd:PRK09493 88 LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 169 DPEQRMR----FRELiagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK09493 168 DPELRHEvlkvMQDL---AEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
22-236 |
2.48e-27 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 108.65 E-value: 2.48e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRLTP-GVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEV---RRRLGYLPQTPGFHPDFTAFE 97
Cdd:COG4148 17 DVDFTLPGrGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLpphRRRIGYVFQEARLFPHLSVRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 FVDYvailkelADRRERHREVRRVLEEV----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDpeqR 173
Cdd:COG4148 97 NLLY-------GRKRAPRAERRISFDEVvellGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALD---L 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 174 MRFRELIAG----AGEGRT-VLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGRVWSSTE 236
Cdd:COG4148 167 ARKAEILPYlerlRDELDIpILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGGE 234
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
22-218 |
2.98e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 105.07 E-value: 2.98e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRLTPGVTGLLGPNGAGKTTLLRVLATAVPADRGAFtVLGHDPGSSrGRQEV-----RRRLGYLPQTPGFHPDFTAF 96
Cdd:cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFD-SRKKInlppqQRKIGLVFQQYALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 97 EFVDYVaiLKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRF 176
Cdd:cd03297 94 ENLAFG--LKRKRNREDRISVDEL-LDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7636021 177 RELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03297 171 LPELKQIKKnlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
25-223 |
3.95e-27 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 105.32 E-value: 3.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 25 LRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgrqevrRRLGYLPQTPGFHPDFTafefVD-YV 102
Cdd:TIGR03771 1 LSADKGeLLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGW------RHIGYVPQRHEFAWDFP----ISvAH 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 103 AILKELA--------DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD-PEQR 173
Cdd:TIGR03771 71 TVMSGRTghigwlrrPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDmPTQE 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 174 MRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRViVMAAGAVRFDGTPAEL 223
Cdd:TIGR03771 151 LLTELFIELAGAGTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQL 199
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
4-223 |
4.44e-27 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 107.85 E-value: 4.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFT-----VLGHDPGssrgrqevR 77
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGeFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILiggrdVTDLPPK--------D 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPGFHPDFTAFE---F---------------VDYVAilkeladrrerhrevrrvlEEVDLGEVRGRRIKKLS 139
Cdd:COG3839 75 RNIAMVFQSYALYPHMTVYEniaFplklrkvpkaeidrrVREAA-------------------ELLGLEDLLDRKPKQLS 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 140 GGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTH-QTEdvAM-LCHRVIVMAAGAVR 215
Cdd:COG3839 136 GGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRlhRRLGTTTIYVTHdQVE--AMtLADRIAVMNDGRIQ 213
|
....*...
gi 7636021 216 FDGTPAEL 223
Cdd:COG3839 214 QVGTPEEL 221
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
14-218 |
8.16e-27 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 104.15 E-value: 8.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhdpgssrgrqEVRRRLGYlpqTPGFHPD 92
Cdd:cd03220 32 VGEFWALKDVSFEVPRGERiGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG----------RVSSLLGL---GGGFNPE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEFVDYVAILKELadrreRHREVRRVLEEV----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPT-VG 167
Cdd:cd03220 99 LTGRENIYLNGRLLGL-----SRKEIDEKIDEIiefsELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLaVG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 168 lDPE--QRM--RFRELIAGageGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03220 174 -DAAfqEKCqrRLRELLKQ---GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
31-220 |
1.60e-26 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 109.33 E-value: 1.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 31 VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgrQEVRRRLGYLPQTPGFHPDFTAFEFVDYVAILKELAd 110
Cdd:TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL--DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS- 1034
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 111 RRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVL 190
Cdd:TIGR01257 1035 WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTII 1114
|
170 180 190
....*....|....*....|....*....|
gi 7636021 191 LSTHQTEDVAMLCHRVIVMAAGAVRFDGTP 220
Cdd:TIGR01257 1115 MSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
8-223 |
1.71e-26 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 105.93 E-value: 1.71e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHY----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRGRQEVRRRL 80
Cdd:COG1135 5 ENLSKTFptkgGPVTALDDVSLTIEKGeIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalSERELRAARRKI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQtpgfHpdF------TAFEFVDY---------VAILK---ELadrrerhrevrrvLEEVDLGEVRGRRIKKLSGGM 142
Cdd:COG1135 85 GMIFQ----H--FnllssrTVAENVALpleiagvpkAEIRKrvaEL-------------LELVGLSDKADAYPSQLSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 143 RQRVALAAALVGDPGFLVLDEPTVGLDPE---------QRMRfRELiagageGRTVLLSTHQTEDVAMLCHRVIVMAAGA 213
Cdd:COG1135 146 KQRVGIARALANNPKVLLCDEATSALDPEttrsildllKDIN-REL------GLTIVLITHEMDVVRRICDRVAVLENGR 218
|
250
....*....|
gi 7636021 214 VRFDGTPAEL 223
Cdd:COG1135 219 IVEQGPVLDV 228
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
7-215 |
1.90e-26 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 104.01 E-value: 1.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 7 ASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLG---HDPGSSRGrqEVRRRLGY 82
Cdd:PRK11248 4 ISHLYADYGGKPALEDINLTLESGeLLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGkpvEGPGAERG--VVFQNEGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTpgfhpdftafEFVDYVAILKELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLV 160
Cdd:PRK11248 82 LPWR----------NVQDNVAFGLQLAgvEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 161 LDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVR 215
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKlwQETGKQVLLITHDIEEAVFMATELVLLSPGPGR 208
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
3-212 |
2.46e-26 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.17 E-value: 2.46e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYG----RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD---PGSSRGrq 74
Cdd:COG4525 2 SMLTVRHVSVRYPgggqPQPALQDVSLTIESGeFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPvtgPGADRG-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 evrrrlgYLPQTPGFHPDFTAfefVDYVAILKELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL 152
Cdd:COG4525 80 -------VVFQKDALLPWLNV---LDNVAFGLRLRgvPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARAL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 153 VGDPGFLVLDEPTVGLDPEQRMRFRELI--AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:COG4525 150 AADPRFLLMDEPFGALDALTREQMQELLldVWQRTGKGVFLITHSVEEALFLATRLVVMSPG 211
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
20-222 |
3.18e-26 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 103.18 E-value: 3.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-----PgssrgrqeVRRRLGYLPQTPGFHPDF 93
Cdd:cd03299 15 LKNVSLEVERGdYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDitnlpP--------EKRDISYVPQNYALFPHM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEFVDYvAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQR 173
Cdd:cd03299 87 TVYKNIAY-GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 7636021 174 MRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:cd03299 166 EKLREELKKIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-224 |
6.81e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 106.26 E-value: 6.81e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLG-----HDPGSSRgrq 74
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGeVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGepvrfRSPRDAQ--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 evRRRLGYLPQTPGFHPDFTAFE------------FVDYVAILKELADrrerhrevrrVLEEVDLGEVRGRRIKKLSGGM 142
Cdd:COG1129 78 --AAGIAIIHQELNLVPNLSVAEniflgreprrggLIDWRAMRRRARE----------LLARLGLDIDPDTPVGDLSVAQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 143 RQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPA 221
Cdd:COG1129 146 QQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRlKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVA 225
|
...
gi 7636021 222 ELT 224
Cdd:COG1129 226 ELT 228
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
3-243 |
7.78e-26 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 105.31 E-value: 7.78e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQEVRRRLG 81
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGsLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAG-DDVEALSARAASRRVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDFTAFEFVDY--VAILKELADRRERHREV-RRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGF 158
Cdd:PRK09536 81 SVPQDTSLSFEFDVRQVVEMgrTPHRSRFDTWTETDRAAvERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 159 LVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL----TARAAGRVWS 233
Cdd:PRK09536 161 LLLDEPTASLDINHQVRTLELVRRlVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVltadTLRAAFDART 240
|
250
....*....|
gi 7636021 234 STEKDPGAKA 243
Cdd:PRK09536 241 AVGTDPATGA 250
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
15-228 |
7.79e-26 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 102.38 E-value: 7.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPGFHPDF 93
Cdd:cd03295 12 GGKKAVNNLNLEIAKGeFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI-REQDPVELRRKIGYVIQQIGLFPHM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEFVDYV-AILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:cd03295 91 TVEENIALVpKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 173 RMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAA 228
Cdd:cd03295 171 RDQLQEEFKRLQQelGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
5-230 |
1.28e-25 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 104.05 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTllrvlaTAVPADrgaftVLGHDPGSS--------RGRQE 75
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGtVLGVLGP*GAA**R------GALPAH-----V*GPDAGRRpwrf*twcANRRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRRRLG-YLPQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVG 154
Cdd:NF000106 83 LRRTIG*HRPVR*GRRESFSGRENLYMIGR*LDLS-RKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIG 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 155 DPGFLVLDEPTVGLDPEQRMR-FRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGR 230
Cdd:NF000106 162 RPAVLYLDEPTTGLDPRTRNEvWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGGR 238
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
9-226 |
1.30e-25 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 106.02 E-value: 1.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTR-ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQT 86
Cdd:COG1132 344 NVSFSYPGDRpVLKDISLTIPPGeTVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI-RDLTLESLRRQIGVVPQD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 PG-FH-----------PDFT------------AFEFVDyvailkELADrrerhrevrrVLEEVdLGEvRGRrikKLSGGM 142
Cdd:COG1132 423 TFlFSgtirenirygrPDATdeeveeaakaaqAHEFIE------ALPD----------GYDTV-VGE-RGV---NLSGGQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 143 RQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSThqtedvAMLCHRVIVMAAGAVRFD 217
Cdd:COG1132 482 RQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTTIviahrLST------IRNADRILVLDDGRIVEQ 555
|
....*....
gi 7636021 218 GTPAELTAR 226
Cdd:COG1132 556 GTHEELLAR 564
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
17-222 |
2.30e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 102.05 E-value: 2.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGR-QEVRRRLGYLPQtpgfHPDFT 94
Cdd:PRK13637 20 KKALDNVNIEIEDGeFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlSDIRKKVGLVFQ----YPEYQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 95 AFEfvdyVAILKELA----------DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK13637 96 LFE----ETIEKDIAfgpinlglseEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 165 TVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:PRK13637 172 TAGLDPKGRDEILNKIKELHKeyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
5-214 |
2.87e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 99.91 E-value: 2.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-PGSSRGRQEVRRRLGY 82
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGeVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKlTDDKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 163 EPTVGLDPE------QRMrfRELiagAGEGRTVLLSTHQ---TEDVAmlcHRVIVMAAGAV 214
Cdd:cd03262 161 EPTSALDPElvgevlDVM--KDL---AEEGMTMVVVTHEmgfAREVA---DRVIFMDDGRI 213
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
8-230 |
3.52e-25 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 102.85 E-value: 3.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQevrRRLGYLPQT 86
Cdd:PRK10851 6 ANIKKSFGRTQVLNDISLDIPSGqMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD---RKVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 PGFHPDFTAFEFVDY---VAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:PRK10851 83 YALFRHMTVFDNIAFgltVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 164 PTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGR 230
Cdd:PRK10851 163 PFGALDAQVRKELRRWLRQLHEelKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATR 231
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
15-197 |
5.15e-25 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 98.65 E-value: 5.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSR-GRQEVRRRLGYLPQTPG---F 89
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGeVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRkGLLERRQRVGLVFQDPDdqlF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 HPDftAFEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:TIGR01166 83 AAD--VDQDVAFGPLNLGLSEAEVERRVREA-LTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159
|
170 180
....*....|....*....|....*....
gi 7636021 170 PEQRMRFRELIAG-AGEGRTVLLSTHQTE 197
Cdd:TIGR01166 160 PAGREQMLAILRRlRAEGMTVVISTHDVD 188
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
15-223 |
8.40e-25 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 103.59 E-value: 8.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAD-RGAFTVLGHdpGSSRGRQEVRRRLGYLPQTPGFHPD 92
Cdd:TIGR00955 36 PRKHLLKNVSGVAKPGeLLAVMGSSGAGKTTLMNALAFRSPKGvKGSGSVLLN--GMPIDAKEMRAISAYVQQDDLFIPT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEFVDYVAILKELADRRERHREVR--RVLEEVDLGEVRGRRI------KKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERvdEVLQALGLRKCANTRIgvpgrvKGLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 165 TVGLDP-EQRMRFRELIAGAGEGRTVLLSTHQ-TEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:TIGR00955 194 TSGLDSfMAYSVVQVLKGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-195 |
9.80e-25 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 103.21 E-value: 9.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY-GRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGrQEVRRRL 80
Cdd:TIGR02868 333 PTLELRDLSAGYpGAPPVLDGVSLDLPPGErVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQ-DEVRRRV 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQTPGFHpDFTAFEFVdyvailkELADRRERHREVRRVLEEVDLGE-----------VRGRRIKKLSGGMRQRVALA 149
Cdd:TIGR02868 412 SVCAQDAHLF-DTTVRENL-------RLARPDATDEELWAALERVGLADwlralpdgldtVLGEGGARLSGGERQRLALA 483
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQ 195
Cdd:TIGR02868 484 RALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-214 |
1.49e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 96.90 E-value: 1.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRA--LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTvLGHDPGSSRGRQEVRRRLGY 82
Cdd:cd03246 2 EVENVSFRYPGAEPpvLRNVSFSIEPGeSLAIIGPSGSGKSTLARLILGLLRPTSGRVR-LDGADISQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQtpgfhpDFTAFEfvdyvailkeladrrerhrevrrvleevdlGEVRGRrIkkLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:cd03246 81 LPQ------DDELFS------------------------------GSIAEN-I--LSGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 163 EPTVGLDPEQRMRFRELIAGA-GEGRTVLLSTHQTEDVAMlCHRVIVMAAGAV 214
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAALkAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
17-214 |
2.71e-24 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 97.48 E-value: 2.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQ--EVRRRLGYLPQTPGFHPDF 93
Cdd:cd03292 14 TAALDGINISISAGeFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAipYLRRKIGVVFQDFRLLPDR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEfvdYVAILKELADRRERHREV--RRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:cd03292 94 NVYE---NVAFALEVTGVPPREIRKrvPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7636021 172 QRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:cd03292 171 TTWEIMNLLKKINKaGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-226 |
3.69e-24 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 101.26 E-value: 3.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH--DPGSSRgrQEVR 77
Cdd:COG3845 2 MPPALELRGITKRFGGVVANDDVSLTVRPGeIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRSPR--DAIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQtpgfH----PDFTAFE------------FVDYVAILKELADrrerhrevrrvLEE-----VDLGevrgRRIK 136
Cdd:COG3845 80 LGIGMVHQ----HfmlvPNLTVAEnivlgleptkggRLDRKAARARIRE-----------LSErygldVDPD----AKVE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRF----RELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:COG3845 141 DLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELfeilRRLAA---EGKSIIFITHKLREVMAIADRVTVLRRG 217
|
250
....*....|....
gi 7636021 213 AVRFDGTPAELTAR 226
Cdd:COG3845 218 KVVGTVDTAETSEE 231
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
14-207 |
4.67e-24 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 96.15 E-value: 4.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdpgssrgrqevrRRLGYLPQTPGFhPD 92
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGsLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGG------------ARVAYVPQRSEV-PD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEFVDYVAI--------LKELadRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:NF040873 69 SLPLTVRDLVAMgrwarrglWRRL--TRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEP 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7636021 165 TVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVI 207
Cdd:NF040873 147 TTGLDAESRERIIALLAEeHARGATVVVVTHDLELVRRADPCVL 190
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
17-226 |
5.19e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 98.38 E-value: 5.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFtVLGHDP--GSSRGRQEVRRRLGYLPQTPGfHPDF 93
Cdd:PRK13636 19 THALKGININIKKGeVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPidYSRKGLMKLRESVGMVFQDPD-NQLF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TA--FEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:PRK13636 97 SAsvYQDVSFGAVNLKLPEDEVRKRVDNA-LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 172 QRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:PRK13636 176 GVSEIMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
17-227 |
6.50e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 97.88 E-value: 6.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPG---FHPd 92
Cdd:PRK13647 18 TKALKGLSLSIPEGSkTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV-NAENEKWVRSKVGLVFQDPDdqvFSS- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 fTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:PRK13647 96 -TVWDDVAFGPVNMGL-DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 173 RMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARA 227
Cdd:PRK13647 174 QETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
5-230 |
9.42e-24 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 100.59 E-value: 9.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY-GRTRA-LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLG 81
Cdd:COG4618 331 LSVENLTVVPpGSKRPiLRGVSFSLEPGeVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADL-SQWDREELGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPD--------FTAFEFVDYVA----------ILKeLADRRerhrevrrvleEVDLGEvRGRRikkLSGGMR 143
Cdd:COG4618 410 YLPQDVELFDGtiaeniarFGDADPEKVVAaaklagvhemILR-LPDGY-----------DTRIGE-GGAR---LSGGQR 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 144 QRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGA-GEGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAE 222
Cdd:COG4618 474 QRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALkARGATVVVITHRPSLLAA-VDKLLVLRDGRVQAFGPRDE 552
|
....*...
gi 7636021 223 LTARAAGR 230
Cdd:COG4618 553 VLARLARP 560
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-219 |
1.25e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.14 E-value: 1.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTvLGHdpgssrgrqevRRRLGYL 83
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGdRIGLIGPNGAGKSTLLKLLAGELEPDSGTVK-LGE-----------TVKIGYF 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQ-TPGFHPDFTAFEFVDYVAilkeladrrerhrevrrvlEEVDLGEVRG-------------RRIKKLSGGMRQRVALA 149
Cdd:COG0488 384 DQhQEELDPDKTVLDELRDGA-------------------PGGTEQEVRGylgrflfsgddafKPVGVLSGGEKARLALA 444
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGegrTVLLSTHQTEDVAMLCHRVIVMAAGAVR-FDGT 219
Cdd:COG0488 445 KLLLSPPNVLLLDEPTNHLDIETLEALEEALDDfPG---TVLLVSHDRYFLDRVATRILEFEDGGVReYPGG 513
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-212 |
2.26e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 97.05 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPA---DRGAFTVLGHD--PGSSRGRQ 74
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGeTLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDllKLSEKELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 EVR-RRLGYLPQTPG--FHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRgRRIKK----LSGGMRQRVA 147
Cdd:COG0444 82 KIRgREIQMIFQDPMtsLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPE-RRLDRypheLSGGMRQRVM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 148 LAAALVGDPGFLVLDEPTVGLDPE---------QRMRfRELiagageGRTVLLSTHqteD---VAMLCHRVIVMAAG 212
Cdd:COG0444 161 IARALALEPKLLIADEPTTALDVTiqaqilnllKDLQ-REL------GLAILFITH---DlgvVAEIADRVAVMYAG 227
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
9-207 |
2.82e-23 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 94.60 E-value: 2.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD---PGSSRGRQEVRRRLGYLP 84
Cdd:TIGR03608 3 NISKKFGDKVILDDLNLTIEKGkMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQEtppLNSKKASKFRREKLGYLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:TIGR03608 83 QNFALIENETVEENLDLGLKYKKL-SKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEP 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7636021 165 TVGLDPEQR-MRFRELIAGAGEGRTVLLSTHQTEdVAMLCHRVI 207
Cdd:TIGR03608 162 TGSLDPKNRdEVLDLLLELNDEGKTIIIVTHDPE-VAKQADRVI 204
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
5-218 |
4.42e-23 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 93.15 E-value: 4.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYG--RTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGrqEVRRRLG 81
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEkIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEK--ALSSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPgfhpdftafefvdyvailkeladrrerhrevrrVLEEVDLGEVRGRRikkLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:cd03247 79 VLNQRP---------------------------------YLFDTTLRNNLGRR---FSGGERQRLALARILLQDAPIVLL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 162 DEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLcHRVIVMAAGAVRFDG 218
Cdd:cd03247 123 DEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
19-226 |
1.52e-22 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 97.78 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgrQEVRRRLGYLPQTPGFHPDFTAFE 97
Cdd:TIGR01257 1954 AVDRLCVGVRPGeCFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI--SDVHQNMGYCPQFDAIDDLLTGRE 2031
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 FVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE-QRMRF 176
Cdd:TIGR01257 2032 HLYLYARLRGVP-AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQaRRMLW 2110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 177 RELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:TIGR01257 2111 NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
5-227 |
2.54e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 93.53 E-value: 2.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTP-GVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG-SSRGRQEVRRRLGY 82
Cdd:PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLsPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDySKRGLLALRQQVAT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPG---FHPDF---TAFEFVDYVAILKELAdrrerhREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDP 156
Cdd:PRK13638 82 VFQDPEqqiFYTDIdsdIAFSLRNLGVPEAEIT------RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 157 GFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARA 227
Cdd:PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
34-223 |
4.68e-22 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 93.71 E-value: 4.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSsrgRQEVRRRLGYLPQTPGFHPDFTAFEFVDYVAILKELaDRRE 113
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN---VPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV-PRAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 114 RHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFR-ELIAGAGE-GRTVLL 191
Cdd:TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQlELKTIQEQlGITFVF 156
|
170 180 190
....*....|....*....|....*....|..
gi 7636021 192 STHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
22-226 |
4.93e-22 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 94.02 E-value: 4.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRLT-PGVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEV---RRRLGYLPQTPGFHPDFTAFE 97
Cdd:TIGR02142 15 DADFTLPgQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLppeKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 FVDYVailKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDpeqRMRFR 177
Cdd:TIGR02142 95 NLRYG---MKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD---DPRKY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 178 ELIA-----GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:TIGR02142 169 EILPylerlHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
24-228 |
5.51e-22 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 91.74 E-value: 5.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 24 SLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLG--HDPGSSRGR------QE--------VRRRLGYlpqt 86
Cdd:COG3840 19 DLTIAAGeRVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGqdLTALPPAERpvsmlfQEnnlfphltVAQNIGL---- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 pGFHPD--FTAFEFVDYVAILkeladrrerhrevrrvlEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:COG3840 95 -GLRPGlkLTAEQRAQVEQAL-----------------ERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 165 TVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAA 228
Cdd:COG3840 157 FSALDPALRQEMLDLVDelCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEP 222
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
8-214 |
5.97e-22 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 91.61 E-value: 5.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHYGRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH------DPGSSRGRqEVRRRL 80
Cdd:COG4161 6 KNINCFYGSHQALFDINLECPSGETlVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfdfsqKPSEKAIR-LLRQKV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQTPGFHPDFTAFEF-----VDYVAILKELAdrrerHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:COG4161 85 GMVFQQYNLWPHLTVMENlieapCKVLGLSKEQA-----REKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMME 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 156 PGFLVLDEPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:COG4161 160 PQVLLFDEPTAALDPEITAQVVEIIRELSQtGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-195 |
6.07e-22 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 90.88 E-value: 6.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGafTVLGHDPGSSRGRQEVRRRLGYLP 84
Cdd:TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGeALQVTGPNGIGKTTLLRILAGLLRPDSG--EVRWNGTPLAEQRDEPHENILYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVDYVAilkelADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:TIGR01189 80 HLPGLKPELSALENLHFWA-----AIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEP 154
|
170 180 190
....*....|....*....|....*....|..
gi 7636021 165 TVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQ 195
Cdd:TIGR01189 155 TTALDKAGVALLAGLLRAhLARGGIVLLTTHQ 186
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
4-212 |
6.15e-22 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 91.61 E-value: 6.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTRALDDVSLRLTPGVTG-LLGPNGAGKTTLLRVLATAVPADRGAFTVLGH------DPGSSRGRQeV 76
Cdd:PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLvLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfdfskTPSDKAIRE-L 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 77 RRRLGYLPQTPGFHPDFTAFEF-----VDYVAILKELAdrrerHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAA 151
Cdd:PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNlieapCRVLGLSKDQA-----LARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 152 LVGDPGFLVLDEPTVGLDPE---QRMR-FRELiagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK11124 156 LMMEPQVLLFDEPTAALDPEitaQIVSiIREL---AETGITQVIVTHEVEVARKTASRVVYMENG 217
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-222 |
6.26e-22 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 93.86 E-value: 6.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHYGRTRALDDVSLRLTPG--VTgLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSSRGRQE 75
Cdd:PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGefLT-LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDithvPAENRHVNT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRrrlgylpQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:PRK09452 91 VF-------QSYALFPHMTVFENVAFGLRMQKTP-AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 156 PGFLVLDEPTVGLDPEQR--MRF------RELiagageGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:PRK09452 163 PKVLLLDESLSALDYKLRkqMQNelkalqRKL------GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
14-215 |
7.78e-22 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 90.78 E-value: 7.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgsSRGRQEVRRRLGYLPQTPGFHPD 92
Cdd:cd03301 10 FGNVTALDDLNLDIADGeFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD---VTDLPPKDRDIAMVFQNYALYPH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEFVDYVAILKElADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:cd03301 87 MTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 7636021 173 RMRFRELIAGAGE--GRTVLLSTH-QTEDVAMlCHRVIVMAAGAVR 215
Cdd:cd03301 166 RVQMRAELKRLQQrlGTTTIYVTHdQVEAMTM-ADRIAVMNDGQIQ 210
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-225 |
8.46e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 94.87 E-value: 8.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY-----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTV-LGHD------PG- 68
Cdd:TIGR03269 278 PIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGeIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrVGDEwvdmtkPGp 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 69 SSRGRqeVRRRLGYLPQTPGFHPDFTAFE-FVDYVAI--LKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQR 145
Cdd:TIGR03269 358 DGRGR--AKRYIGILHQEYDLYPHRTVLDnLTEAIGLelPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREemEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
..
gi 7636021 224 TA 225
Cdd:TIGR03269 516 VE 517
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-226 |
8.72e-22 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 95.19 E-value: 8.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 7 ASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH--DPGSsrgrQEVRRRLGYL 83
Cdd:NF033858 269 ARGLTMRFGDFTAVDHVSFRIRRGeIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQpvDAGD----IATRRRVGYM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:NF033858 345 SQAFSLYGELTVRQNLELHARLFHLPAAEIAARVAEM-LERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDE 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 164 PTVGLDPEQRMRF-RELIAGAGE-GRTVLLSTH-QTEdvAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:NF033858 424 PTSGVDPVARDMFwRLLIELSREdGVTIFISTHfMNE--AERCDRISLMHAGRVLASDTPAALVAA 487
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
19-226 |
9.40e-22 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 91.01 E-value: 9.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSrGRQEVRRRLGYLPQtpgfhpDFTAFE 97
Cdd:cd03252 17 ILDNISLRIKPGeVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA-DPAWLRRQVGVVLQ------ENVLFN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 --FVDYVAILKELADRRERHREVRRV-----LEEVDLG--EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL 168
Cdd:cd03252 90 rsIRDNIALADPGMSMERVIEAAKLAgahdfISELPEGydTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 169 DPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:cd03252 170 DYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRIVEQGSHDELLAE 226
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-212 |
9.62e-22 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 91.38 E-value: 9.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTP-GVTGLLGPNGAGKTTLLRVL---ATAVP--ADRGAFTVLGHDPGSSRGRQ 74
Cdd:PRK14239 2 TEPILQVSDLSVYYNKKKALNSVSLDFYPnEITALIGPSGSGKSTLLRSInrmNDLNPevTITGSIVYNGHNIYSPRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 -EVRRRLGYLPQTPGFHPdFTAFEFVDYVAILKELADRRERHREVRRVLEEVDL-GEVRGR---RIKKLSGGMRQRVALA 149
Cdd:PRK14239 82 vDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIwDEVKDRlhdSALGLSGGQQQRVCIA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG 223
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-232 |
9.72e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 91.51 E-value: 9.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAV-----PADRGAFTVLGHDPgSSRGRQEVRR 78
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNtITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDI-FKMDVIELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 79 RLGYLPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRR-VLEEVDL-GEVRGR---RIKKLSGGMRQRVALAAALV 153
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRwALEKAQLwDEVKDRldaPAGKLSGGQQQRLCIARALA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 154 GDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTH------QTEDVAMLCHRVIVMAAGAVR--FDGTPAELTA 225
Cdd:PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHfpqqaaRISDYVAFLYKGQIVEWGPTRevFTNPRHELTE 242
|
....*...
gi 7636021 226 R-AAGRVW 232
Cdd:PRK14247 243 KyVTGRLY 250
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-180 |
1.11e-21 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 91.33 E-value: 1.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFtvlghdpgssrgRQEVRRR 79
Cdd:PRK09544 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGkILTLLGPNGAGKSTLVRVVLGLVAPDEGVI------------KRNGKLR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTpgFHPDFTAFEFVDYVAILKeladRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:PRK09544 69 IGYVPQK--LYLDTTLPLTVNRFLRLR----PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL 142
|
170 180
....*....|....*....|.
gi 7636021 160 VLDEPTVGLDPEQRMRFRELI 180
Cdd:PRK09544 143 VLDEPTQGVDVNGQVALYDLI 163
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
31-218 |
1.68e-21 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 89.86 E-value: 1.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 31 VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSrgrQEVRRRLGYLPQTPGFHPDFTAFEFVDyVAILKELAD 110
Cdd:cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA---PPADRPVSMLFQENNLFAHLTVEQNVG-LGLSPGLKL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 111 RRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRT 188
Cdd:cd03298 102 TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDlhAETKMT 181
|
170 180 190
....*....|....*....|....*....|
gi 7636021 189 VLLSTHQTEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:cd03298 182 VLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-214 |
4.66e-21 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 89.60 E-value: 4.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSS--RGRQEVR 77
Cdd:PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGeVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRdlYALSEAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRL------GYLPQTP--GFHPDFTAFEFV----------DYVAILKELADRrerhrevrrvLEEVdlgEVRGRRIKKL- 138
Cdd:PRK11701 83 RRRllrtewGFVHQHPrdGLRMQVSAGGNIgerlmavgarHYGDIRATAGDW----------LERV---EIDAARIDDLp 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 139 ---SGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGA 213
Cdd:PRK11701 150 ttfSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlvRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
.
gi 7636021 214 V 214
Cdd:PRK11701 230 V 230
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-214 |
6.13e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 87.49 E-value: 6.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHygrtRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLG 81
Cdd:cd03215 3 PVLEVRGLSVK----GAVRDVSFEVRAGeIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLP---QTPGFHPDFTAFEfvdyVAILKELadrrerhrevrrvleevdlgevrgrrikkLSGGMRQRVALAAALVGDPGF 158
Cdd:cd03215 79 YVPedrKREGLVLDLSVAE----NIALSSL-----------------------------LSGGNQQKVVLARWLARDPRV 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 159 LVLDEPTVGLDPEQRMRFRELI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:cd03215 126 LILDEPTRGVDVGAKAEIYRLIrELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
34-223 |
2.28e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 88.32 E-value: 2.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQEVRRRLGYLPQTPG---FHPdfTAFEFVDYVAILKELaD 110
Cdd:PRK13652 35 VIGPNGAGKSTLFRHFNGILKPTSGSVLIRG-EPITKENIREVRKFVGLVFQNPDdqiFSP--TVEQDIAFGPINLGL-D 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 111 RRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRmrfRELIAGAGE----- 185
Cdd:PRK13652 111 EETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV---KELIDFLNDlpety 187
|
170 180 190
....*....|....*....|....*....|....*...
gi 7636021 186 GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13652 188 GMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
17-220 |
2.78e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 88.12 E-value: 2.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGYLPQTP-------- 87
Cdd:PRK13644 15 TPALENINLVIKKGeYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPetqfvgrt 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 -----GFHPDFTAFEFVDyvaiLKELADRRerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13644 95 veedlAFGPENLCLPPIE----IRKRVDRA---------LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTP 220
Cdd:PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEkGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEP 219
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
5-231 |
3.70e-20 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 87.51 E-value: 3.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-PGSSRGR-QEVRRRLG 81
Cdd:PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGkITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENiPAMSRSRlYTVRKRMS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDFTAFEFVDYVaiLKELAD--RRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:PRK11831 88 MLFQSGALFTDMNVFDNVAYP--LREHTQlpAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGRV 231
Cdd:PRK11831 166 MFDEPFVGQDPITMGVLVKLISelNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRV 239
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
20-226 |
5.16e-20 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 86.52 E-value: 5.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQ-TPGFH------- 90
Cdd:cd03253 17 LKDVSFTIPAGkKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI-REVTLDSLRRAIGVVPQdTVLFNdtigyni 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 ----PDFTAFEFVDyVAILKELADRRERHREVRrvleEVDLGEvRGRrikKLSGGMRQRVALAAALVGDPGFLVLDEPTV 166
Cdd:cd03253 96 rygrPDATDEEVIE-AAKAAQIHDKIMRFPDGY----DTIVGE-RGL---KLSGGEKQRVAIARAILKNPPILLLDEATS 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 167 GLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:cd03253 167 ALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGTHEELLAK 225
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-223 |
5.76e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 86.99 E-value: 5.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY--GRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVlGHDPGSSRGRQEVR 77
Cdd:PRK13635 2 KEEIIRVEHISFRYpdAATYALKDVSFSVYEGEwVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV-GGMVLSEETVWDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRLGYLPQTPGFH------PDFTAF----------EFVDYVailkeladrrerhrevRRVLEEVDLGEVRGRRIKKLSGG 141
Cdd:PRK13635 81 RQVGMVFQNPDNQfvgatvQDDVAFglenigvpreEMVERV----------------DQALRQVGMEDFLNREPHRLSGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 142 MRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELI--AGAGEGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGT 219
Cdd:PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVrqLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGT 223
|
....
gi 7636021 220 PAEL 223
Cdd:PRK13635 224 PEEI 227
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
17-228 |
7.25e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 87.00 E-value: 7.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTvLGHDPGSSRGRQE----VRRRLGYLPQtpgfHP 91
Cdd:PRK13634 20 RRALYDVNVSIPSGsYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVITAGKKNKklkpLRKKVGIVFQ----FP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEfvdyVAILKELA--------DRRERHREVRRVLEEVDLGE-VRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13634 95 EHQLFE----ETVEKDICfgpmnfgvSEEDAKQKAREMIELVGLPEeLLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 163 EPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAA 228
Cdd:PRK13634 171 EPTAGLDPKGRKEMMEMFYKlhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
14-226 |
8.11e-20 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 85.74 E-value: 8.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTR-ALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpGSSRGRQEVRRRLGYLPQTPGFHP 91
Cdd:cd03254 12 YDEKKpVLKDINFSIKPGETvAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID-IRDISRKSLRSMIGVVLQDTFLFS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DfTAFEFVDY---------VAILKELADRRERHREVRRVLEEVdLGEvRGrriKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:cd03254 91 G-TIMENIRLgrpnatdeeVIEAAKEAGAHDFIMKLPNGYDTV-LGE-NG---GNLSQGERQLLAIARAMLRDPKILILD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSTHQTEDvamlchRVIVMAAGAVRFDGTPAELTAR 226
Cdd:cd03254 165 EATSNIDTETEKLIQEALEKLMKGRTSIiiahrLSTIKNAD------KILVLDDGKIIEEGTHDELLAK 227
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
20-226 |
9.53e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 86.71 E-value: 9.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQEVRRRLGYLPQTPgfHPDFTAFEF 98
Cdd:PRK13650 23 LNDVSFHVKQGEwLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-DLLTEENVWDIRHKIGMVFQNP--DNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 99 VDYVAI--------LKELADRRERHrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP 170
Cdd:PRK13650 100 EDDVAFglenkgipHEEMKERVNEA------LELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 171 EQRMRFRELIAGAGE--GRTVLLSTHQTEDVAmLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:PRK13650 174 EGRLELIKTIKGIRDdyQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
19-226 |
1.18e-19 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 85.36 E-value: 1.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPgFHPDFTAFE 97
Cdd:cd03251 17 VLRDISLDIPAGeTVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV-RDYTLASLRRQIGLVSQDV-FLFNDTVAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 FVDYVAILKELADRRERHREVRRV--LEEVDLG--EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQR 173
Cdd:cd03251 95 NIAYGRPGATREEVEEAARAANAHefIMELPEGydTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 174 MRFRELIAGAGEGRTVL-----LSTHQTEDvamlchRVIVMAAGAVRFDGTPAELTAR 226
Cdd:cd03251 175 RLVQAALERLMKNRTTFviahrLSTIENAD------RIVVLEDGKIVERGTHEELLAQ 226
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
15-223 |
2.07e-19 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 85.39 E-value: 2.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-PGSSRGR-QEVRR-RLGYLPQTPGFH 90
Cdd:cd03294 35 GQTVGVNDVSLDVREGeIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDiAAMSRKElRELRRkKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAfefVDYVAILKELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL 168
Cdd:cd03294 115 PHRTV---LENVAFGLEVQgvPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 169 DPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:cd03294 192 DPLIRREMQDELLRlqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
17-223 |
2.27e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 85.56 E-value: 2.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVlGHDPGSSRGRQE----VRRRLGYLPQtpgfHP 91
Cdd:PRK13643 19 SRALFDIDLEVKKGsYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSSTSKQKeikpVRKKVGVVFQ----FP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEfvdyVAILKELA--------DRRERHREVRRVLEEVDLG-EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13643 94 ESQLFE----ETVLKDVAfgpqnfgiPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13643 170 EPTAGLDPKARIEMMQLFESIHQsGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-228 |
3.41e-19 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 87.00 E-value: 3.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSlhygRTRALDDVSLRLTPG----VTGLLGpngAGKTTLLRVLATAVPADRGAFTVLGH--DPGSSRgrQEVRRR 79
Cdd:COG1129 258 EVEGLS----VGGVVRDVSFSVRAGeilgIAGLVG---AGRTELARALFGADPADSGEIRLDGKpvRIRSPR--DAIRAG 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLP---QTPGFHPDFTAFEFVdYVAILKELA-----DRRERHREVRRVLEEVDlgeVR----GRRIKKLSGGMRQRVA 147
Cdd:COG1129 329 IAYVPedrKGEGLVLDLSIRENI-TLASLDRLSrggllDRRRERALAEEYIKRLR---IKtpspEQPVGNLSGGNQQKVV 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 148 LAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRfdgtpAELTAR 226
Cdd:COG1129 405 LAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRElAAEGKAVIVISSELPELLGLSDRILVMREGRIV-----GELDRE 479
|
..
gi 7636021 227 AA 228
Cdd:COG1129 480 EA 481
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
16-223 |
4.23e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 84.75 E-value: 4.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 16 RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVL-ATAVPADrGAFTVLGHDPGSSRGRQEVRRRLGYLPQTP------ 87
Cdd:PRK13633 22 EKLALDDVNLEVKKGeFLVILGRNGSGKSTIAKHMnALLIPSE-GKVYVDGLDTSDEENLWDIRNKAGMVFQNPdnqiva 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 -------GFHPDFTAfefVDYVAILKELADRrerhrevrrvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLV 160
Cdd:PRK13633 101 tiveedvAFGPENLG---IPPEEIRERVDES----------LKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 161 LDEPTVGLDPEQRmrfRELIAGAGE-----GRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13633 168 FDEPTAMLDPSGR---REVVNTIKElnkkyGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
17-180 |
4.89e-19 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 83.56 E-value: 4.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRGRQEVR-RRLGYLPQtpgFH-- 90
Cdd:TIGR02211 18 TRVLKGVSLSIGKGeIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSklSSNERAKLRnKKLGFIYQ---FHhl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 -PDFTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:TIGR02211 95 lPDFTALENVAMPLLIGKK-SVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173
|
170
....*....|.
gi 7636021 170 PEQRMRFRELI 180
Cdd:TIGR02211 174 NNNAKIIFDLM 184
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-223 |
5.95e-19 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 85.66 E-value: 5.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQevrRR 79
Cdd:PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGeIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ---RP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLP-KAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILErvGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
6-215 |
1.34e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.84 E-value: 1.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgrqeVRRRLGYLP 84
Cdd:PRK13539 4 EGEDLACVRGGRVLFSGLSFTLAAGeALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD----VAEACHYLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVDYVAILKeladrRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK13539 80 HRNAMKPALTVAENLEFWAAFL-----GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 165 TVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQteDVAMLCHRVIVMAAGAVR 215
Cdd:PRK13539 155 TAALDAAAVALFAELIRAhLAQGGIVIAATHI--PLGLPGARELDLGPFAAE 204
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-194 |
1.51e-18 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 82.78 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVL----ATaVPADR--GAFTVLGHDPgssRGR 73
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENkVTALIGPSGCGKSTLLRCLnrmnDL-IPGARveGEILLDGEDI---YDP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 74 Q----EVRRRLGYLPQTP-GFhPdFTAFEFVDYVAILKELADRRERHREVRRVLEEVDL-GEVRGRrIKK----LSGGMR 143
Cdd:COG1117 84 DvdvvELRRRVGMVFQKPnPF-P-KSIYDNVAYGLRLHGIKSKSELDEIVEESLRKAALwDEVKDR-LKKsalgLSGGQQ 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 7636021 144 QRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTH 194
Cdd:COG1117 161 QRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTH 211
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
19-214 |
1.62e-18 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 84.08 E-value: 1.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRGRQEVRRRLGYLPQtpgfHpdF-- 93
Cdd:PRK11153 20 ALNNVSLHIPAGeIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalSEKELRKARRQIGMIFQ----H--Fnl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 ----TAFefvDYVAILKELA--DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVG 167
Cdd:PRK11153 94 lssrTVF---DNVALPLELAgtPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 7636021 168 LDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:PRK11153 171 LDPATTRSILELLKDINRelGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
19-220 |
2.33e-18 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 81.39 E-value: 2.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTP---------- 87
Cdd:cd03244 19 VLKNISFSIKPGEKvGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI-SKIGLHDLRSRISIIPQDPvlfsgtirsn 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 ----GFHPDFTAFEFVDYVAiLKELADRRERHREVrrvleEVDLGEvrgrriKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03244 98 ldpfGEYSDEELWQALERVG-LKEFVESLPGGLDT-----VVEEGG------ENLSVGQRQLLCLARALLRKSKILVLDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 164 PTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTP 220
Cdd:cd03244 166 ATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI-IDSDRILVLDKGRVVEFDSP 221
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
14-230 |
2.60e-18 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 83.62 E-value: 2.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPG--VTgLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQevrRRLGYLPQTPGFHP 91
Cdd:PRK11432 16 FGSNTVIDNLNLTIKQGtmVT-LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ---RDICMVFQSYALFP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEFVDYVaiLKELA-DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP 170
Cdd:PRK11432 92 HMSLGENVGYG--LKMLGvPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 171 EQRMRFRELIAGAGE--GRTVLLSTH-QTEDVAmLCHRVIVMAAGAVRFDGTPAELTARAAGR 230
Cdd:PRK11432 170 NLRRSMREKIRELQQqfNITSLYVTHdQSEAFA-VSDTVIVMNKGKIMQIGSPQELYRQPASR 231
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
5-194 |
2.68e-18 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 79.41 E-value: 2.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhdpgssrgrqevRRRLGYL 83
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGdRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS------------TVKIGYF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQtpgfhpdftafefvdyvailkeladrrerhrevrrvleevdlgevrgrrikkLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:cd03221 69 EQ----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96
|
170 180 190
....*....|....*....|....*....|.
gi 7636021 164 PTVGLDPEQRMRFRELIagAGEGRTVLLSTH 194
Cdd:cd03221 97 PTNHLDLESIEALEEAL--KEYPGTVILVSH 125
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-214 |
2.84e-18 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 84.35 E-value: 2.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHY-----------GRTRALDDVSLRLTPGVT-GLLGPNGAGKTTL----LRVLATavpadRGAFTVLGH 65
Cdd:COG4172 273 PPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETlGLVGESGSGKSTLglalLRLIPS-----EGEIRFDGQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 66 D--PGSSRGRQEVRRRLGYLPQTP--GFHPDFTAFEFVDY-VAILKELADRRERHREVRRVLEEVDL-GEVRGRRIKKLS 139
Cdd:COG4172 348 DldGLSRRALRPLRRRMQVVFQDPfgSLSPRMTVGQIIAEgLRVHGPGLSAAERRARVAEALEEVGLdPAARHRYPHEFS 427
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 140 GGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:COG4172 428 GGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDlqREHGLAYLFISHDLAVVRALAHRVMVMKDGKV 504
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
23-211 |
3.05e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 81.00 E-value: 3.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 23 VSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGafTVLGHDPGSSRGRQEVRRRLGYLPQTPGFHPDFTAFEFVDY 101
Cdd:cd03231 19 LSFTLAAGeALQVTGPNGSGKTTLLRILAGLSPPLAG--RVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 102 VAILkeladrrERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIA 181
Cdd:cd03231 97 WHAD-------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169
|
170 180 190
....*....|....*....|....*....|.
gi 7636021 182 G-AGEGRTVLLSTHQTEDVAMLCHRVIVMAA 211
Cdd:cd03231 170 GhCARGGMVVLTTHQDLGLSEAGARELDLGF 200
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
3-214 |
3.25e-18 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 81.80 E-value: 3.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVlghdpgSSRGRQEV----- 76
Cdd:TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGeVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY------IMRSGAELelyql 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 77 ----RRRL-----GYLPQTP--GFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVdlgEVRGRRIKKL----SGG 141
Cdd:TIGR02323 76 seaeRRRLmrtewGFVHQNPrdGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEV---EIDPTRIDDLprafSGG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 142 MRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGlvRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-223 |
5.87e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 81.68 E-value: 5.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTP-GVTGLLGPNGAGKTTLLRVLA---TAVPADRGAFTVL--GHDPGSSRGRQEV 76
Cdd:PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPArAVTSLMGPTGSGKTTFLRTLNrmnDKVSGYRYSGDVLlgGRSIFNYRDVLEF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 77 RRRLGYLPQTPGFHPdFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIK----KLSGGMRQRVALAAAL 152
Cdd:PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSdspfRLSGGQQQLLCLARTL 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 153 VGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
20-222 |
5.99e-18 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 81.04 E-value: 5.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAdRGAFTVLGHDPGSSRGRQEVRRRlGYLPQT-------PGFHp 91
Cdd:COG4138 12 LGPISAQVNAGeLIHLIGPNGAGKSTLLARMAGLLPG-QGEILLNGRPLSDWSAAELARHR-AYLSQQqsppfamPVFQ- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 dftafefvdYVAI-LKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALV-----GDPG--FLVLDE 163
Cdd:COG4138 89 ---------YLALhQPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptINPEgqLLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 164 PTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:COG4138 160 PMNSLDVAQQAALDRLLRElCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAE 219
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
17-214 |
6.13e-18 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 80.59 E-value: 6.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdPGSSRGRQEVRRRLGYLPQtpgfHPDFTA 95
Cdd:cd03248 27 TLVLQDVSFTLHPGeVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK-PISQYEHKYLHSKVSLVGQ----EPVLFA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 96 FEFVDYVAI---------LKELADRRERHREVRRVLEEVDLGEvrGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTV 166
Cdd:cd03248 102 RSLQDNIAYglqscsfecVKEAAQKAHAHSFISELASGYDTEV--GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATS 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 7636021 167 GLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMlCHRVIVMAAGAV 214
Cdd:cd03248 180 ALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
31-202 |
6.56e-18 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 83.32 E-value: 6.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 31 VTGLLGPNGAGKTTLLRVLA-TAVPAdrgaftvLGhDPGSSRGRQEVRRR------LGYL-------------PQtpgfh 90
Cdd:PRK13409 101 VTGILGPNGIGKTTAVKILSgELIPN-------LG-DYEEEPSWDEVLKRfrgtelQNYFkklyngeikvvhkPQ----- 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 pdftafeFVDYVAIL-----KELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPT 165
Cdd:PRK13409 168 -------YVDLIPKVfkgkvRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240
|
170 180 190
....*....|....*....|....*....|....*..
gi 7636021 166 VGLDPEQRMRFRELIAGAGEGRTVLLSTHqteDVAML 202
Cdd:PRK13409 241 SYLDIRQRLNVARLIRELAEGKYVLVVEH---DLAVL 274
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
10-200 |
8.82e-18 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 79.83 E-value: 8.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADrgaFTVLGH---DPGSSRGRQEVRRRLGYLPQ 85
Cdd:COG4136 7 LTITLGGRPLLAPLSLTVAPGeILTLMGPSGSGKSTLLAAIAGTLSPA---FSASGEvllNGRRLTALPAEQRRIGILFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAFEfvdyvAILKELADRRERH---REVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:COG4136 84 DDLLFPHLSVGE-----NLAFALPPTIGRAqrrARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGEGRT--VLLSTHQTEDVA 200
Cdd:COG4136 159 EPFSKLDAALRAQFREFVFEQIRQRGipALLVTHDEEDAP 198
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
17-224 |
1.01e-17 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 80.53 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG------VTGLLGPNGAGKTTLLRVLATAVPADRGaftvlghDPGSSRgrqevrRRLGYLPQTpgFH 90
Cdd:cd03237 7 KKTLGEFTLEVEGGsiseseVIGILGPNGIGKTTFIKMLAGVLKPDEG-------DIEIEL------DTVSYKPQY--IK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAFefVDYVaILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP 170
Cdd:cd03237 72 ADYEGT--VRDL-LSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 171 EQRMRFRELIAGAGEG--RTVLLSTHQTEDVAMLCHRVIVmaagavrFDGTPAELT 224
Cdd:cd03237 149 EQRLMASKVIRRFAENneKTAFVVEHDIIMIDYLADRLIV-------FEGEPSVNG 197
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-219 |
1.27e-17 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 80.44 E-value: 1.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGA---FTVLGHDPGS----SRG 72
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGeMVALLGPSGSGKSTLLRHLSGLITGDKSAgshIELLGRTVQRegrlARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 73 RQEVRRRLGYLpqtpgfhpdFTAFEFVDYVAILKELAD----------------RRERHREVRRVLEEVDLGEVRGRRIK 136
Cdd:PRK09984 81 IRKSRANTGYI---------FQQFNLVNRLSVLENVLIgalgstpfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELI--AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLrdINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
....*
gi 7636021 215 RFDGT 219
Cdd:PRK09984 232 FYDGS 236
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
31-202 |
1.80e-17 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 82.14 E-value: 1.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 31 VTGLLGPNGAGKTTLLRVLATAVPADRGAF-------TVLGHDPGS---------SRGRQEVRRRLGYLPQTPGFHpDFT 94
Cdd:COG1245 101 VTGILGPNGIGKSTALKILSGELKPNLGDYdeepswdEVLKRFRGTelqdyfkklANGEIKVAHKPQYVDLIPKVF-KGT 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 95 AFEF---VDYVAILKELAdrrerhrevrrvlEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:COG1245 180 VRELlekVDERGKLDELA-------------EKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIY 246
|
170 180 190
....*....|....*....|....*....|..
gi 7636021 172 QRMRFRELIAG-AGEGRTVLLSTHqteDVAML 202
Cdd:COG1245 247 QRLNVARLIRElAEEGKYVLVVEH---DLAIL 275
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
19-223 |
2.16e-17 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 78.95 E-value: 2.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTT----LLRVLATAVPADRGAFTVLGHDPGSSRGRQevrRRLGYLPQTP--GFHP 91
Cdd:TIGR02770 1 LVQDLNLSLKRGeVLALVGESGSGKSLtclaILGLLPPGLTQTSGEILLDGRPLLPLSIRG---RHIATIMQNPrtAFNP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFT-AFEFVDYVAILKELADRRERHREVRrvLEEVDLGEVRgRRIKK----LSGGMRQRVALAAALVGDPGFLVLDEPTV 166
Cdd:TIGR02770 78 LFTmGNHAIETLRSLGKLSKQARALILEA--LEAVGLPDPE-EVLKKypfqLSGGMLQRVMIALALLLEPPFLIADEPTT 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 167 GLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:TIGR02770 155 DLDVVNQARVLKLLRELRQlfGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
5-223 |
2.50e-17 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 79.63 E-value: 2.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGR---------- 73
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGdVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKdgqlkvadkn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 74 --QEVRRRLGYLPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGE-VRGRRIKKLSGGMRQRVALAA 150
Cdd:PRK10619 86 qlRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDErAQGKYPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 151 ALVGDPGFLVLDEPTVGLDPE---QRMRFRELIagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPElvgEVLRIMQQL--AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
17-221 |
2.62e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 81.78 E-value: 2.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG------VTGLLGPNGAGKTTLLRVLATAVPADRGAFTvlghdpgssrgrQEVRrrLGYLPQTPGFH 90
Cdd:PRK13409 347 TKKLGDFSLEVEGGeiyegeVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD------------PELK--ISYKPQYIKPD 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAFEFvdyvaiLKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP 170
Cdd:PRK13409 413 YDGTVEDL------LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 171 EQRMRFRELIAGAGEGR--TVLLSTHqteDVAM---LCHRVIVmaagavrFDGTPA 221
Cdd:PRK13409 487 EQRLAVAKAIRRIAEEReaTALVVDH---DIYMidyISDRLMV-------FEGEPG 532
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
19-212 |
2.76e-17 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 78.28 E-value: 2.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhdpgssrgrqevrrRLGYLPQTPG--------- 88
Cdd:cd03250 20 TLKDINLEVPKGeLVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYVSQEPWiqngtiren 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 --FHPDFTAfEFVDYV----AILKELAdrrerhrevrrVLEEVDLGEVRGRRIKkLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:cd03250 86 ilFGKPFDE-ERYEKVikacALEPDLE-----------ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 163 EPTVGLDPE-QRMRFRELIAGAG-EGRTVLLSTHQTEdVAMLCHRVIVMAAG 212
Cdd:cd03250 153 DPLSAVDAHvGRHIFENCILGLLlNNKTRILVTHQLQ-LLPHADQIVVLDNG 203
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
17-223 |
2.99e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 79.74 E-value: 2.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG-SSRGRQEVRRRLGYLPQTPG---FHP 91
Cdd:PRK13639 15 TEALKGINFKAEKGeMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKyDKKSLLEVRKTVGIVFQNPDdqlFAP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 dfTAFEFVDYVAILKELaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:PRK13639 95 --TVEEDVAFGPLNLGL-SKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 172 QRMRFRELIAGAG-EGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13639 172 GASQIMKLLYDLNkEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
6-196 |
3.35e-17 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 77.92 E-value: 3.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGafTVLGHDPGSSRGRQEVRRRLGYLP 84
Cdd:PRK13538 3 EARNLACERDERILFSGLSFTLNAGeLVQIEGPNGAGKTSLLRILAGLARPDAG--EVLWQGEPIRRQRDEYHQDLLYLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFVDYVAILKELADrrerHREVRRVLEEVDLgevRGRR---IKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGD----DEALWEALAQVGL---AGFEdvpVRQLSAGQQRRVALARLWLTRAPLWIL 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 7636021 162 DEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQT 196
Cdd:PRK13538 154 DEPFTAIDKQGVARLEALLAQhAEQGGMVILTTHQD 189
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-169 |
3.35e-17 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 80.16 E-value: 3.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY-------GRT----RALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG 68
Cdd:COG4608 4 AEPLLEVRDLKKHFpvrgglfGRTvgvvKAVDGVSFDIRRGETlGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDIT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 69 SSRGRQ--EVRRRLGYLPQTP--GFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLG-EVRGRRIKKLSGGMR 143
Cdd:COG4608 84 GLSGRElrPLRRRMQMVFQDPyaSLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRpEHADRYPHEFSGGQR 163
|
170 180
....*....|....*....|....*.
gi 7636021 144 QRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:COG4608 164 QRIGIARALALNPKLIVCDEPVSALD 189
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
34-228 |
3.37e-17 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 78.47 E-value: 3.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSSRGR----QE--------VRRRLGYlpqtpGFHPDFTAFE 97
Cdd:PRK10771 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDhtttPPSRRPVsmlfQEnnlfshltVAQNIGL-----GLNPGLKLNA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 fvDYVAILKELAdrrerhrevrrvlEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFR 177
Cdd:PRK10771 105 --AQREKLHAIA-------------RQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 178 ELIAGAGEGR--TVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAA 228
Cdd:PRK10771 170 TLVSQVCQERqlTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
18-223 |
4.28e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 79.40 E-value: 4.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQE---VRRRLGYLPQtpgfHPDF 93
Cdd:PRK13649 21 RALFDVNLTIEDGsYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDikqIRKKVGLVFQ----FPES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFE--FVDYVA-------ILKELADRRERHREVRRVLEEvdlgEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK13649 97 QLFEetVLKDVAfgpqnfgVSQEEAEALAREKLALVGISE----SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 165 TVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13649 173 TAGLDPKGRKELMTLFKKLHQsGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
17-223 |
4.29e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 79.49 E-value: 4.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD---PGSSRGRQEVRRRLGYLPQtpgfHPD 92
Cdd:PRK13641 20 KKGLDNISFELEEGsFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHitpETGNKNLKKLRKKVSLVFQ----FPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEfvdyVAILKEL--------ADRRERHREVRRVLEEVDLGE-VRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDE 163
Cdd:PRK13641 96 AQLFE----NTVLKDVefgpknfgFSEDEAKEKALKWLKKVGLSEdLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 164 PTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13641 172 PAAGLDPEGRKEMMQLFKDyQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
15-195 |
4.56e-17 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 77.28 E-value: 4.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPAD--RGAFTVLGhdpgsSRGRQEVRRRLGYLPQTPGFHP 91
Cdd:cd03232 18 GKRQLLNNISGYVKPGTlTALMGESGAGKTTLLDVLAGRKTAGviTGEILING-----RPLDKNFQRSTGYVEQQDVHSP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEFVDYVAILKELAdrrerhrevrrvLEEvdlgevrgrrikklsggmRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:cd03232 93 NLTVREALRFSALLRGLS------------VEQ------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
|
170 180
....*....|....*....|....*...
gi 7636021 172 QR---MRF-RELiagAGEGRTVLLSTHQ 195
Cdd:cd03232 143 AAyniVRFlKKL---ADSGQAILCTIHQ 167
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
20-218 |
5.79e-17 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 80.69 E-value: 5.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgsSRGRQEVRRRLGYLPQTPGFHPDFTAFEF 98
Cdd:PLN03211 84 LNGVTGMASPGeILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQILKRTGFVTQDDILYPHLTVRET 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 99 VDYVAILK--ELADRRERHREVRRVLEEVDLGE-----VRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:PLN03211 161 LVFCSLLRlpKSLTKQEKILVAESVISELGLTKcentiIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 7636021 172 QRMRFRELIAG-AGEGRTVLLSTHQ-TEDVAMLCHRVIVMAAGAVRFDG 218
Cdd:PLN03211 241 AAYRLVLTLGSlAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
138-223 |
8.84e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 78.74 E-value: 8.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 138 LSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGA-GEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRF 216
Cdd:PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAkANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256
|
....*..
gi 7636021 217 DGTPAEL 223
Cdd:PRK13631 257 TGTPYEI 263
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
18-223 |
9.07e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 78.51 E-value: 9.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAfTVLGHD--PGSSRGRQEV---RRRLGYLPQtpgfHP 91
Cdd:PRK13645 25 KALNNTSLTFKKNkVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGDYaiPANLKKIKEVkrlRKEIGLVFQ----FP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEfvdyVAILKELA--------DRRERHREVRRVLEEVDLGEVRGRRIK-KLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13645 100 EYQLFQ----ETIEKDIAfgpvnlgeNKQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGIIAMDGNTLVLD 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 163 EPTVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13645 176 EPTGGLDPKGEEDFINLFErlNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
15-219 |
9.84e-17 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 80.08 E-value: 9.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQtpgfhpDF 93
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGeALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL-KQWDRETFGKHIGYLPQ------DV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFE--FVDYVAILKELADRRE-RHREVRRVLEEVDLG------EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:TIGR01842 402 ELFPgtVAENIARFGENADPEKiIEAAKLAGVHELILRlpdgydTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 165 TVGLDP--EQRMRfRELIAGAGEGRTVLLSTHQTEdVAMLCHRVIVMAAGAVRFDGT 219
Cdd:TIGR01842 482 NSNLDEegEQALA-NAIKALKARGITVVVITHRPS-LLGCVDKILVLQDGRIARFGE 536
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
5-226 |
1.20e-16 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 79.78 E-value: 1.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTR-ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTvLGHDPGSSRGRQEVRRRLGY 82
Cdd:TIGR01193 474 IVINDVSYSYGYGSnILSDISLTIKMNsKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL-LNGFSLKDIDRHTLRQFINY 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPgfhpdftafeFVDYVAILKELADRRERHREVRRVLEEVDLGEVRgRRIKK---------------LSGGMRQRVA 147
Cdd:TIGR01193 553 LPQEP----------YIFSGSILENLLLGAKENVSQDEIWAACEIAEIK-DDIENmplgyqtelseegssISGGQKQRIA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 148 LAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEgRTVLLSTHQTEdVAMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-KTIIFVAHRLS-VAKQSDKIIVLDHGKIIEQGSHDELLDR 698
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
9-239 |
1.24e-16 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 77.41 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFtVLGHDPgSSRGRQEVR-----RRLgy 82
Cdd:PRK11247 17 AVSKRYGERTVLNQLDLHIPAGqFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAP-LAEAREDTRlmfqdARL-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTpgfhpdftafEFVDYVAilkeLADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK11247 93 LPWK----------KVIDNVG----LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 163 EPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFD-----------GTP--AELTARA 227
Cdd:PRK11247 159 EPLGALDALTRIEMQDLIESlwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDltvdlprprrrGSArlAELEAEV 238
|
250
....*....|..
gi 7636021 228 AGRVWSSTEKDP 239
Cdd:PRK11247 239 LQRVMSRGESEP 250
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
18-217 |
1.28e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 77.43 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG--VTgLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-------------------------PG-- 68
Cdd:COG1101 20 RALDGLNLTIEEGdfVT-VIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDvtklpeykrakyigrvfqdpmmgtaPSmt 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 69 --------SSRGRqevRRRLGylpqtPGFHPDFTAFefvdyvaiLKELadrrerhrevrrvLEEVDLG-EVR-GRRIKKL 138
Cdd:COG1101 99 ieenlalaYRRGK---RRGLR-----RGLTKKRREL--------FREL-------------LATLGLGlENRlDTKVGLL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 139 SGGMRQRVALAAALVGDPGFLVLDEPTVGLDP---EQRMRF-RELIagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:COG1101 150 SGGQRQALSLLMATLTKPKLLLLDEHTAALDPktaALVLELtEKIV--EENNLTTLMVTHNMEQALDYGNRLIMMHEGRI 227
|
...
gi 7636021 215 RFD 217
Cdd:COG1101 228 ILD 230
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-230 |
1.48e-16 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 76.84 E-value: 1.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRR 79
Cdd:PRK11614 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGeIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFEfvdYVAILKELADRRERHREVRRVLEEVD-LGEVRGRRIKKLSGGMRQRVALAAALVGDPGF 158
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEE---NLAMGGFFAERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 159 LVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGR 230
Cdd:PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQlREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVR 231
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
15-226 |
1.51e-16 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 79.23 E-value: 1.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPGF---- 89
Cdd:PRK13657 346 NSRQGVEDVSFEAKPGQTvAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI-RTVTRASLRRNIAVVFQDAGLfnrs 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 --------HPDFTAFEFVDYVailkELADRRERHREVRRVLEEVdLGEvRGRRikkLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:PRK13657 425 iednirvgRPDATDEEMRAAA----ERAQAHDFIERKPDGYDTV-VGE-RGRQ---LSGGERQRLAIARALLKDPPILIL 495
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 162 DEPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSTHQTEDvamlchRVIVMAAGAVRFDGTPAELTAR 226
Cdd:PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFiiahrLSTVRNAD------RILVFDNGRVVESGSFDELVAR 559
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-228 |
1.58e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 77.62 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY--GRTrALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgssrgRQEVR 77
Cdd:PRK15056 3 QQAGIVVNDVTVTWrnGHT-ALRDASFTVPGGsIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-----RQALQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 78 RRL-GYLPQTPgfHPDFTAFEFVDYVAILKELAD-------RRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALA 149
Cdd:PRK15056 77 KNLvAYVPQSE--EVDWSFPVLVEDVVMMGRYGHmgwlrraKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMR----FRELIAgagEGRTVLLSTHQTEDVAMLCHRViVMAAGAVRFDGtPAELTA 225
Cdd:PRK15056 155 RAIAQQGQVILLDEPFTGVDVKTEARiislLRELRD---EGKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASG-PTETTF 229
|
...
gi 7636021 226 RAA 228
Cdd:PRK15056 230 TAE 232
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
34-214 |
2.03e-16 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 76.05 E-value: 2.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADRGAFTVlghDPGSSRGRQEVRRRLGYLPQTPGFHPDFTAFEFVDyVAILKELADRRE 113
Cdd:TIGR01277 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKV---NDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKLNAE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 114 RHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGR--TVLL 191
Cdd:TIGR01277 105 QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERqrTLLM 184
|
170 180
....*....|....*....|...
gi 7636021 192 STHQTEDVAMLCHRVIVMAAGAV 214
Cdd:TIGR01277 185 VTHHLSDARAIASQIAVVSQGKI 207
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-225 |
2.15e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 76.69 E-value: 2.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLslhygrtRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgsSRGRQE---VRRR 79
Cdd:COG4674 17 TVSFDGF-------KALNDLSLYVDPGeLRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTD---LTGLDEheiARLG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFE-----FVDYVAILKELADRRERHREV--RRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL 152
Cdd:COG4674 87 IGRKFQKPTVFEELTVFEnlelaLKGDRGVFASLFARLTAEERDriEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 153 VGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:COG4674 167 AQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQA 239
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
20-225 |
2.30e-16 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 76.71 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTV--LGHDPGSSRGRQ-----EVRRRLGYLPQTPGFHP 91
Cdd:PRK11264 19 LHGIDLEVKPGeVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgdITIDTARSLSQQkglirQLRQHVGFVFQNFNLFP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:PRK11264 99 HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 172 QRMRFRELIAG-AGEGRTVLLSTHQ---TEDVAmlcHRVIVMAAGAVRFDGTPAELTA 225
Cdd:PRK11264 179 LVGEVLNTIRQlAQEKRTMVIVTHEmsfARDVA---DRAIFMDQGRIVEQGPAKALFA 233
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
10-211 |
3.39e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 76.36 E-value: 3.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRV---LATAVPADRGAFTVLGHDP---GSSRGRQEVRRRLGY 82
Cdd:PRK14243 16 LNVYYGSFLAVKNVWLDIPKNqITAFIGPSGCGKSTILRCfnrLNDLIPGFRVEGKVTFHGKnlyAPDVDPVEVRRRIGM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHP----DFTAF--EFVDYVAILKELADRRerhrevrrvLEEVDLGEVRGRRIKK----LSGGMRQRVALAAAL 152
Cdd:PRK14243 96 VFQKPNPFPksiyDNIAYgaRINGYKGDMDELVERS---------LRQAALWDEVKDKLKQsglsLSGGQQQRLCIARAI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 153 VGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAmlchRVIVMAA 211
Cdd:PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA----RVSDMTA 221
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
2-223 |
4.73e-16 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 75.99 E-value: 4.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD------------PG 68
Cdd:COG4598 6 PPALEVRDLHKSFGDLEVLKGVSLTARKGdVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEirlkpdrdgelvPA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 69 SSRGRQEVRRRLGYLPQTPGFHPDFTAFEFVDY--VAILKElaDRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRV 146
Cdd:COG4598 86 DRRQLQRIRTRLGMVFQSFNLWSHMTVLENVIEapVHVLGR--PKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 147 ALAAALVGDPGFLVLDEPTVGLDPE------QRMrfRELiagAGEGRTVLLSTHQ---TEDVAmlcHRVIVMAAGAVRFD 217
Cdd:COG4598 164 AIARALAMEPEVMLFDEPTSALDPElvgevlKVM--RDL---AEEGRTMLVVTHEmgfARDVS---SHVVFLHQGRIEEQ 235
|
....*.
gi 7636021 218 GTPAEL 223
Cdd:COG4598 236 GPPAEV 241
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
17-222 |
7.60e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 77.13 E-value: 7.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG------VTGLLGPNGAGKTTLLRVLATAVPADRGAFtvlghdpgssrgrqEVRRRLGYLPQ--TPG 88
Cdd:COG1245 348 TKSYGGFSLEVEGGeiregeVLGIVGPNGIGKTTFAKILAGVLKPDEGEV--------------DEDLKISYKPQyiSPD 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 FhpDFTAFEFvdyvailkeLADRRERHREVRRVLEEV----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:COG1245 414 Y--DGTVEEF---------LRSANTDDFGSSYYKTEIikplGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 165 TVGLDPEQRM-------RFREliagaGEGRTVLLSTHqteDVAM---LCHRVIVmaagavrFDGTPAE 222
Cdd:COG1245 483 SAHLDVEQRLavakairRFAE-----NRGKTAMVVDH---DIYLidyISDRLMV-------FEGEPGV 535
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-194 |
8.72e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 75.26 E-value: 8.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGRTRALDDVSLRL-TPGVTGLLGPNGAGKTTLLRVLATAVPAD-----RGAFTVLGHDPGSSRGRQ-EVRRRLGY 82
Cdd:PRK14267 10 LRVYYGSNHVIKGVDLKIpQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDVDPiEVRREVGM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRR-VLEEVDLGEVRGRRIK----KLSGGMRQRVALAAALVGDPG 157
Cdd:PRK14267 90 VFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEwALKKAALWDEVKDRLNdypsNLSGGQRQRLVIARALAMKPK 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 7636021 158 FLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTH 194
Cdd:PRK14267 170 ILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
30-202 |
1.29e-15 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 74.71 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 30 GVTGLLGPNGAGKTTLLRVLATAVPADRGAF-------TVLGHDPGSS---------RGRQEVRRRLGYLPQTPgfhpdf 93
Cdd:cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdEILDEFRGSElqnyftkllEGDVKVIVKPQYVDLIP------ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEfvdyvAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQR 173
Cdd:cd03236 101 KAVK-----GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQR 175
|
170 180 190
....*....|....*....|....*....|
gi 7636021 174 MRFRELIAG-AGEGRTVLLSTHqteDVAML 202
Cdd:cd03236 176 LNAARLIRElAEDDNYVLVVEH---DLAVL 202
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
18-222 |
1.82e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 75.12 E-value: 1.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDP------------------GSSRGRQ---- 74
Cdd:PRK13651 21 KALDNVSVEINQGeFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEknkkktkekekvleklviQKTRFKKikki 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 -EVRRRLGylpqtpgfhpdfTAFEFVDY----VAILKELA--------DRRERHREVRRVLEEVDLGEVRGRRIK-KLSG 140
Cdd:PRK13651 101 kEIRRRVG------------VVFQFAEYqlfeQTIEKDIIfgpvsmgvSKEEAKKRAAKYIELVGLDESYLQRSPfELSG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 141 GMRQRVALAAALVGDPGFLVLDEPTVGLDPE--QRMR--FRELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRF 216
Cdd:PRK13651 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQgvKEILeiFDNLNK---QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK 245
|
....*.
gi 7636021 217 DGTPAE 222
Cdd:PRK13651 246 DGDTYD 251
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
19-223 |
3.53e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 73.63 E-value: 3.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFtVLGHDPGSSRGRQEVRRRLGYLPQTP---------- 87
Cdd:PRK13648 24 TLKDVSFNIPKGQwTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRKHIGIVFQNPdnqfvgsivk 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 ---GFHPDFTAFEFVDYVAILKEladrrerhrevrrVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK13648 103 ydvAFGLENHAVPYDEMHRRVSE-------------ALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 165 TVGLDPEQRMRFRELIAGAGEGR--TVLLSTHQ-TEdvAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13648 170 TSMLDPDARQNLLDLVRKVKSEHniTIISITHDlSE--AMEADHVIVMNKGTVYKEGTPTEI 229
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
17-212 |
4.71e-15 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 72.54 E-value: 4.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 17 TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH--DPGSSRGRQEVR-RRLGYLPQtpgFH-- 90
Cdd:PRK11629 22 TDVLHNVSFSIGEGeMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQpmSKLSSAAKAELRnQKLGFIYQ---FHhl 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 -PDFTAFEFVDyVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PRK11629 99 lPDFTALENVA-MPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 7636021 170 PEQRMRFRELIA--GAGEGRTVLLSTHQTEdVAMLCHRVIVMAAG 212
Cdd:PRK11629 178 ARNADSIFQLLGelNRLQGTAFLVVTHDLQ-LAKRMSRQLEMRDG 221
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
19-223 |
5.38e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 73.10 E-value: 5.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPGFH------P 91
Cdd:PRK13632 24 ALKNVSFEINEGeYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI-SKENLKEIRKKIGIIFQNPDNQfigatvE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFTAF-------EFVDYVAILKELAdrrerhrevrrvlEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK13632 103 DDIAFglenkkvPPKKMKDIIDDLA-------------KKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 165 TVGLDPEQRMRFRELIAGAGEGR--TVLLSTHQTEDvAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRkkTLISITHDMDE-AILADKVIVFSEGKLIAQGKPKEI 229
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
19-223 |
6.81e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 73.28 E-value: 6.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLG---HDPGSSRGRQEVRRRLGYLPQtpgfHPDFT 94
Cdd:PRK13646 22 AIHDVNTEFEQGKYyAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDitiTHKTKDKYIRPVRKRIGMVFQ----FPESQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 95 AFEfvDYVAilKELadrRERHREVRRVLEEV---------DLG---EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13646 98 LFE--DTVE--REI---IFGPKNFKMNLDEVknyahrllmDLGfsrDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 163 EPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13646 171 EPTAGLDPQSKRQVMRLLKSlqTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-223 |
8.66e-15 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 72.33 E-value: 8.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSSRGRQE 75
Cdd:PRK11300 2 SQPLLSVSGLMMRFGGLLAVNNVNLEVREQeIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHieglPGHQIARMG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRR-----RL--------------------GYLP---QTPGFHPdfTAFEFVDYVAILkeladrrerhrevrrvLEEVDL 127
Cdd:PRK11300 82 VVRtfqhvRLfremtvienllvaqhqqlktGLFSgllKTPAFRR--AESEALDRAATW----------------LERVGL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 128 GEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHR 205
Cdd:PRK11300 144 LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNehNVTVLLIEHDMKLVMGISDR 223
|
250
....*....|....*...
gi 7636021 206 VIVMAAGAVRFDGTPAEL 223
Cdd:PRK11300 224 IYVVNQGTPLANGTPEEI 241
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-226 |
9.04e-15 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 73.98 E-value: 9.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY-GRTR-ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRgRQEVRRRLG 81
Cdd:TIGR02203 331 VEFRNVTFRYpGRDRpALDSISLVIEPGeTVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-LASLRRQVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDfTAFEFVDYVAILKELADRRERHREVRRVLEEVD-----LGEVRGRRIKKLSGGMRQRVALAAALVGDP 156
Cdd:TIGR02203 410 LVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDklplgLDTPIGENGVLLSGGQRQRLAIARALLKDA 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 157 GFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSTHQTEDvamlchRVIVMAAGAVRFDGTPAELTAR 226
Cdd:TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQGRTTLviahrLSTIEKAD------RIVVMDDGRIVERGTHNELLAR 557
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1-223 |
1.00e-14 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 72.33 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVS---ASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEV 76
Cdd:PRK10253 1 MTESVArlrGEQLTLGYGKYTVAENLTVEIPDGhFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI-QHYASKEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 77 RRRLGYLPQ---TPGfhpDFTAFEFVD---------YVAILKELADRRERHrevrrvLEEVDLGEVRGRRIKKLSGGMRQ 144
Cdd:PRK10253 80 ARRIGLLAQnatTPG---DITVQELVArgryphqplFTRWRKEDEEAVTKA------MQATGITHLADQSVDTLSGGQRQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 145 RVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSelNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230
|
.
gi 7636021 223 L 223
Cdd:PRK10253 231 I 231
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
3-194 |
1.35e-14 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 71.03 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRALDDVSLRLTPGVTGLL-GPNGAGKTTLLRVLATAVPADRGAFTVLGHdpgsSRGRQEVRRRLG 81
Cdd:PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVqGDNGAGKTTLLRVLAGLLHVESGQIQIDGK----TATRGDRSRFMA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDFTAFEFVDYVAILKeladRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLH----GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 7636021 162 DEPTVGLDPE-----QRMRFRELIAGAGegrtVLLSTH 194
Cdd:PRK13543 162 DEPYANLDLEgitlvNRMISAHLRGGGA----ALVTTH 195
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
20-212 |
1.37e-14 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 71.34 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH---DPGSSRgrQEVRRRLGYLPQtpgfhpdFTA 95
Cdd:TIGR01184 1 LKGVNLTIQQGeFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKqitEPGPDR--MVVFQNYSLLPW-------LTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 96 FEFVdYVAILKELADRRERHREV--RRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQR 173
Cdd:TIGR01184 72 RENI-ALAVDRVLPDLSKSERRAivEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 7636021 174 MRFRE-LIAGAGEGR-TVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:TIGR01184 151 GNLQEeLMQIWEEHRvTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
5-212 |
1.60e-14 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 71.76 E-value: 1.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY---------GRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRG 72
Cdd:TIGR02769 3 LEVRDVTHTYrtgglfgakQRAPVLTNVSLSIEEGETvGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYqlDRKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 73 RQEVRRRLGYLPQ-TPG-FHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDL-GEVRGRRIKKLSGGMRQRVALA 149
Cdd:TIGR02769 83 RRAFRRDVQLVFQdSPSaVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLrSEDADKLPRQLSGGQLQRINIA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:TIGR02769 163 RALAVKPKLIVLDEAVSNLDMVLQAVILELLRKlqQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
15-223 |
1.92e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 71.36 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTrALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAfTVLGHDPGSSRGRQEVRRRLGYLPQTPGFHPDF 93
Cdd:PRK10575 23 GRT-LLHPLSLTFPAGkVTGLIGHNGSGKSTLLKMLGRHQPPSEGE-ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEFV-----DYVAILKELADRRERHREVRRVLeeVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL 168
Cdd:PRK10575 101 TVRELVaigryPWHGALGRFGAADREKVEEAISL--VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 169 DPEQRMRFRELIAGAGEGR--TVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK10575 179 DIAHQVDVLALVHRLSQERglTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-224 |
2.04e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.16 E-value: 2.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgSSRGRQEVRRR 79
Cdd:PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGeVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP--CARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LG-YL-PQTPGFHPDFTAFEfvdyvAILKELADRRERHREVRRVLEE----VDLGEVRGrrikKLSGGMRQRVALAAALV 153
Cdd:PRK15439 86 LGiYLvPQEPLLFPNLSVKE-----NILFGLPKRQASMQKMKQLLAAlgcqLDLDSSAG----SLEVADRQIVEILRGLM 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 154 GDPGFLVLDEPTVGLDP-EQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELT 224
Cdd:PRK15439 157 RDSRILILDEPTASLTPaETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
20-171 |
2.19e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 73.05 E-value: 2.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLA--------TAVPAdrgaftvlghdPGssrgrqevrRRLGYLPQTPGFH 90
Cdd:TIGR03719 21 LKDISLSFFPGAKiGVLGLNGAGKSTLLRIMAgvdkdfngEARPQ-----------PG---------IKVGYLPQEPQLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAFEFV-----DYVAILKEL----------ADRRERHREVRRVLEE----VDLGEVRGR---------------RIK 136
Cdd:TIGR03719 81 PTKTVRENVeegvaEIKDALDRFneisakyaepDADFDKLAAEQAELQEiidaADAWDLDSQleiamdalrcppwdaDVT 160
|
170 180 190
....*....|....*....|....*....|....*
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
2-231 |
2.44e-14 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 71.26 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHY---------GRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--S 69
Cdd:PRK10419 1 MTLLNVSGLSHHYahgglsgkhQHQTVLNNVSLSLKSGETvALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAklN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 70 SRGRQEVRRRLGYLPQTP--GFHPDFTAFEFVDyvAILKELA--DRRERHREVRRVLEEVDLG-EVRGRRIKKLSGGMRQ 144
Cdd:PRK10419 81 RAQRKAFRRDIQMVFQDSisAVNPRKTVREIIR--EPLRHLLslDKAERLARASEMLRAVDLDdSVLDKRPPQLSGGQLQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 145 RVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE 222
Cdd:PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQqfGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238
|
250
....*....|.
gi 7636021 223 LTA--RAAGRV 231
Cdd:PRK10419 239 KLTfsSPAGRV 249
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-213 |
2.64e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 70.54 E-value: 2.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLS----LHY-GRTR--ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVL-ATAVPaDRGAFTVLgHDPG--- 68
Cdd:COG4778 1 MTTLLEVENLSktftLHLqGGKRlpVLDGVSFSVAAGeCVALTGPSGAGKSTLLKCIyGNYLP-DSGSILVR-HDGGwvd 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 69 ----SSRGRQEVRRR-LGYLPQTPGFHPDFTAfefVDYVA--ILKELADRRERHREVRRVLEEVDLGEvrgrrikKL--- 138
Cdd:COG4778 79 laqaSPREILALRRRtIGYVSQFLRVIPRVSA---LDVVAepLLERGVDREEARARARELLARLNLPE-------RLwdl 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 139 -----SGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGA-GEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:COG4778 149 ppatfSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAkARGTAIIGIFHDEEVREAVADRVVDVTPF 228
|
.
gi 7636021 213 A 213
Cdd:COG4778 229 S 229
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
15-223 |
2.98e-14 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 72.37 E-value: 2.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPG--SSRGRQEVRRR-LGYLPQTPGFH 90
Cdd:PRK10070 39 GLSLGVKDASLAIEEGeIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAkiSDAELREVRRKkIAMVFQSFALM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAfefVDYVAILKELADRRERHREVRR--VLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL 168
Cdd:PRK10070 119 PHMTV---LDNTAFGMELAGINAEERREKAldALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 169 DPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK10070 196 DPLIRTEMQDELVKlqAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
20-215 |
3.45e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.19 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGS--SRGRQEVR-RRLGYLPQTPGFHPDFTA 95
Cdd:PRK10584 26 LTGVELVVKRGETiALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmdEEARAKLRaKHVGFVFQSFMLIPTLNA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 96 FEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMR 175
Cdd:PRK10584 106 LENVELPALLRGESSRQSRNGAKAL-LEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDK 184
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 7636021 176 FRELIAGAGE--GRTVLLSTHQtEDVAMLCHRVIVMAAGAVR 215
Cdd:PRK10584 185 IADLLFSLNRehGTTLILVTHD-LQLAARCDRRLRLVNGQLQ 225
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-220 |
3.46e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 69.75 E-value: 3.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGR--TRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLG 81
Cdd:cd03369 7 IEVENLSVRYAPdlPPVLKNVSFKVKAGEkIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI-STIPLEDLRSSLT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPgfhpdftafefVDYVAILKELADRrerhrevrrvLEEVDLGEVRGR-RIKK----LSGGMRQRVALAAALVGDP 156
Cdd:cd03369 86 IIPQDP-----------TLFSGTIRSNLDP----------FDEYSDEEIYGAlRVSEgglnLSQGQRQLLCLARALLKRP 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 157 GFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTP 220
Cdd:cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
15-224 |
4.59e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 69.74 E-value: 4.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPGVTGLL-GPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPGFHPDf 93
Cdd:PRK10247 18 GDAKILNNISFSLRAGEFKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI-STLKPEIYRQQVSYCAQTPTLFGD- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFefvDYVAILKELADRRERHREVRRVLEEVDLGE-VRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:PRK10247 96 TVY---DNLIFPWQIRNQQPDPAIFLDDLERFALPDtILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 173 RMRFRELIAGAGE--GRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAELT 224
Cdd:PRK10247 173 KHNVNEIIHRYVReqNIAVLWVTHDKDEINH-ADKVITLQPHAGEMQEARYELA 225
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-214 |
4.95e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 72.05 E-value: 4.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPGVT-GLLGPNGAGKTT----LLRVLATavpadRGAFTVLGHdPGSSRGRQE---VRRRLGYLPQT 86
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETlGLVGESGSGKSTtglaLLRLINS-----QGEIWFDGQ-PLHNLNRRQllpVRHRIQVVFQD 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 P--GFHPDFTAFEFV-DYVAILKELADRRERHREVRRVLEEVDLG-EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK15134 371 PnsSLNPRLNVLQIIeEGLRVHQPTLSAAQREQQVIAVMEEVGLDpETRHRYPAEFSGGQRQRIAIARALILKPSLIILD 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 163 EPTVGLDPEQRMRFRELIAGAGEGRTV--LLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:PRK15134 451 EPTSSLDKTVQAQILALLKSLQQKHQLayLFISHDLHVVRALCHQVIVLRQGEV 504
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-213 |
7.69e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 71.35 E-value: 7.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRR 79
Cdd:PRK09700 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGeIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFE--FVDYVAILK----ELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALV 153
Cdd:PRK09700 82 IGIIYQELSVIDELTVLEnlYIGRHLTKKvcgvNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 154 GDPGFLVLDEPTVGL-DPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGA 213
Cdd:PRK09700 162 LDAKVIIMDEPTSSLtNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGS 222
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
20-226 |
9.14e-14 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 69.11 E-value: 9.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTPgfhpdfTAFE- 97
Cdd:cd03249 19 LKGLSLTIPPGKTvALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI-RDLNLRWLRSQIGLVSQEP------VLFDg 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 -------FVDYVAILKELADRRERHREVRRVLEEVDLGEVR-GRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:cd03249 92 tiaenirYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLvGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 170 PEQRMRFRELIAGAGEGRTVL-----LSTHQTEDvamlchRVIVMAAGAVRFDGTPAELTAR 226
Cdd:cd03249 172 AESEKLVQEALDRAMKGRTTIviahrLSTIRNAD------LIAVLQNGQVVEQGTHDELMAQ 227
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-171 |
1.07e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 70.73 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVlghdpGSSrgrqevrRRLGYL 83
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGgIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-----GET-------VKLAYV 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQT-PGFHPDFTAFEfvdyvailkELADrrerhrevrrVLEEVDLG--EVRGR---------------RIKKLSGGMRQR 145
Cdd:TIGR03719 391 DQSrDALDPNKTVWE---------EISG----------GLDIIKLGkrEIPSRayvgrfnfkgsdqqkKVGQLSGGERNR 451
|
170 180
....*....|....*....|....*.
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVE 477
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
19-223 |
1.18e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 69.44 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVL-ATAVP--ADRGAFTVLGHDPGSsRGRQEVRRRLGYLPQTPgfHPDFT 94
Cdd:PRK13640 22 ALNDISFSIPRGSwTALIGHNGSGKSTISKLInGLLLPddNPNSKITVDGITLTA-KTVWDIREKVGIVFQNP--DNQFV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 95 AFEFVDYVAILKE--LADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:PRK13640 99 GATVGDDVAFGLEnrAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 7636021 173 RMRFRELIAGAGE--GRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13640 179 KEQILKLIRKLKKknNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEI 230
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
34-231 |
1.57e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 68.81 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADrGAFTVLGHDPGSSRGRQEVRRRlGYLPQT-------PGFHpdftafefvdYVAI-L 105
Cdd:PRK03695 27 LVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHR-AYLSQQqtppfamPVFQ----------YLTLhQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 106 KELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL-----VGDPG--FLVLDEPTVGLDPEQRMRFRE 178
Cdd:PRK03695 95 PDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPAgqLLLLDEPMNSLDVAQQAALDR 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 179 LI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAE-LTARAAGRV 231
Cdd:PRK03695 175 LLsELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEvLTPENLAQV 229
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-208 |
2.84e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 69.55 E-value: 2.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhdpgssrgrQEVRRR 79
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGqVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---------QEMRFA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 ------------------------------LGYLPQTPGFHPDFTAFEFVdyVAILKELAdrrerhrevrrvlEEVDlge 129
Cdd:PRK11288 72 sttaalaagvaiiyqelhlvpemtvaenlyLGQLPHKGGIVNRRLLNYEA--REQLEHLG-------------VDID--- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 130 vRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL---DPEQRMRF-RELIAgagEGRTVLLSTHQTEDVAMLCHR 205
Cdd:PRK11288 134 -PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLsarEIEQLFRViRELRA---EGRVILYVSHRMEEIFALCDA 209
|
...
gi 7636021 206 VIV 208
Cdd:PRK11288 210 ITV 212
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-230 |
3.05e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 69.29 E-value: 3.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGR-TRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRL 80
Cdd:COG3845 256 VVLEVENLSVRDDRgVPALKDVSLEVRAGeILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQTP---GFHPDFTAFE----------------FVDYVAIlKELADRRerhrevrrvLEEVDlgeVRGR----RIKK 137
Cdd:COG3845 336 AYIPEDRlgrGLVPDMSVAEnlilgryrrppfsrggFLDRKAI-RAFAEEL---------IEEFD---VRTPgpdtPARS 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 138 LSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE--QRMRfRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVR 215
Cdd:COG3845 403 LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGaiEFIH-QRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
250
....*....|....*
gi 7636021 216 FDGTPAELTARAAGR 230
Cdd:COG3845 482 GEVPAAEATREEIGL 496
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-225 |
3.10e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 69.49 E-value: 3.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLS-LHYGRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPAdRGAFTVLGHdPGSSRGRQEVRRRLG 81
Cdd:PRK11174 349 TIEAEDLEiLSPDGKTLAGPLNFTLPAGQrIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGI-ELRELDPESWRKHLS 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPG-FHpdftafefvdyvAILKE---LADRRERHREVRRVLEEVDLGE-----------VRGRRIKKLSGGMRQRV 146
Cdd:PRK11174 427 WVGQNPQlPH------------GTLRDnvlLGNPDASDEQLQQALENAWVSEflpllpqgldtPIGDQAAGLSVGQAQRL 494
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 147 ALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQ 572
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
3-212 |
3.35e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 69.45 E-value: 3.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLH--YGRTRaLDDVSLRLTPGvTGLL--GPNGAGKTTLLRVLAtavpadrgaftvlGHDPgSSRGRqeVRR 78
Cdd:COG4178 361 GALALEDLTLRtpDGRPL-LEDLSLSLKPG-ERLLitGPSGSGKSTLLRAIA-------------GLWP-YGSGR--IAR 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 79 ----RLGYLPQTPgfhpdftafefvdYVAI--LKEL-----ADRRERHREVRRVLEEVDLGEVRGR--------RIkkLS 139
Cdd:COG4178 423 pagaRVLFLPQRP-------------YLPLgtLREAllypaTAEAFSDAELREALEAVGLGHLAERldeeadwdQV--LS 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 140 GGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQtEDVAMLCHRVIVMAAG 212
Cdd:COG4178 488 LGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLREELPGTTVISVGHR-STLAAFHDRVLELTGD 559
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
20-171 |
3.64e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 69.38 E-value: 3.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLA--------TAVPAdrgaftvlghdPGSsrgrqevrrRLGYLPQTPGFH 90
Cdd:PRK11819 23 LKDISLSFFPGAKiGVLGLNGAGKSTLLRIMAgvdkefegEARPA-----------PGI---------KVGYLPQEPQLD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAFEFV-----DYVAILKELADRRERHREVRRVLEEvdLGEVRGR-------------------------------R 134
Cdd:PRK11819 83 PEKTVRENVeegvaEVKAALDRFNEIYAAYAEPDADFDA--LAAEQGElqeiidaadawdldsqleiamdalrcppwdaK 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 7636021 135 IKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
10-226 |
4.34e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 69.06 E-value: 4.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVL--ATAVPADRGafTVLGH----------DPGSSRGRQ-- 74
Cdd:TIGR03269 6 LTKKFDGKEVLKNISFTIEEGeVLGILGRSGAGKSVLMHVLrgMDQYEPTSG--RIIYHvalcekcgyvERPSKVGEPcp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 ----------------------EVRRRLGYLPQ-TPGFHPDFTAFEFVdyVAILKELA-DRRERHREVRRVLEEVDLGEV 130
Cdd:TIGR03269 84 vcggtlepeevdfwnlsdklrrRIRKRIAIMLQrTFALYGDDTVLDNV--LEALEEIGyEGKEAVGRAVDLIEMVQLSHR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 131 RGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ-RMRFRELIAGA-GEGRTVLLSTHQTEDVAMLCHRVIV 208
Cdd:TIGR03269 162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTaKLVHNALEEAVkASGISMVLTSHWPEVIEDLSDKAIW 241
|
250
....*....|....*...
gi 7636021 209 MAAGAVRFDGTPAELTAR 226
Cdd:TIGR03269 242 LENGEIKEEGTPDEVVAV 259
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
18-223 |
5.48e-13 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 67.54 E-value: 5.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAD--------RGAFTVLGhDPGSSRGRQEVRRRLGYLPQT-- 86
Cdd:PRK13547 15 AILRDLSLRIEPGrVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNG-EPLAAIDAPRLARLRAVLPQAaq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 PGFhpDFTAFEFV---DYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL---------VG 154
Cdd:PRK13547 94 PAF--AFSAREIVllgRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlwpphdaAQ 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 155 DPGFLVLDEPTVGLDPEQRMRFRELI-AGAGEGRT-VLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVrRLARDWNLgVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
5-223 |
5.51e-13 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 68.13 E-value: 5.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD----PGSSRGrqevrrr 79
Cdd:PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGeFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRmndvPPAERG------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFEFVDYVAILKElADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTH-QTEdvAM-LCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKrlGRTMIYVTHdQVE--AMtLADKIVVLDAGRVAQVGKPLEL 221
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
21-231 |
7.83e-13 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 66.65 E-value: 7.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 21 DDVSLRLTPG-VTGLLGPNGAGKT----TLLRVLATAVPADRGAFTVLGHD--PGSSRGRQevrrrLGYLPQTP--GFHP 91
Cdd:PRK10418 20 HGVSLTLQRGrVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPvaPCALRGRK-----IATIMQNPrsAFNP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DFT-AFEFVDYVAILKELADRRERHREvrrvLEEVDLGEVRgrRIKKL-----SGGMRQRVALAAALVGDPGFLVLDEPT 165
Cdd:PRK10418 95 LHTmHTHARETCLALGKPADDATLTAA----LEAVGLENAA--RVLKLypfemSGGMLQRMMIALALLCEAPFIIADEPT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 166 VGLDPEQRMRFRELIAG--AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELTARAAGRV 231
Cdd:PRK10418 169 TDLDVVAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAV 236
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
20-226 |
8.47e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 68.21 E-value: 8.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQEVRRRLGYLPQTP----------- 87
Cdd:TIGR00958 497 LKGLTFTLHPGeVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG-VPLVQYDHHYLHRQVALVGQEPvlfsgsvreni 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 GFHPDFTAFEFVDYVAILKELADRRERHrevrrvleEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVG 167
Cdd:TIGR00958 576 AYGLTDTPDEEIMAAAKAANAHDFIMEF--------PNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 168 LDPEQRMRFRELIAGAgeGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:TIGR00958 648 LDAECEQLLQESRSRA--SRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
3-226 |
1.55e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 67.54 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHYGRTRA-LDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-----PGSsrgrqe 75
Cdd:COG5265 356 GEVRFENVSFGYDPERPiLKGVSFEVPAGKTvAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDirdvtQAS------ 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRRRLGYLPQ-------TPGF-----HPDFTAFEFV---------DYVAILKELADRrerhrevrrvleEVdlGEvRGRr 134
Cdd:COG5265 430 LRAAIGIVPQdtvlfndTIAYniaygRPDASEEEVEaaaraaqihDFIESLPDGYDT------------RV--GE-RGL- 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 135 ikKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSThqtedvAMLCHRVIVM 209
Cdd:COG5265 494 --KLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLviahrLST------IVDADEILVL 565
|
250
....*....|....*..
gi 7636021 210 AAGAVRFDGTPAELTAR 226
Cdd:COG5265 566 EAGRIVERGTHAELLAQ 582
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
13-212 |
1.65e-12 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 65.28 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 13 HYGRTRALDDVSLRLTPGVTGLL-GPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQE--VRRRLGYLPQTPGF 89
Cdd:PRK10908 11 YLGGRQALQGVTFHMRPGEMAFLtGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVpfLRRQIGMIFQDHHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 HPDFTAFEFVDYVAILKElADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PRK10908 91 LMDRTVYDNVAIPLIIAG-ASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 7636021 170 ---PEQRMRFRELIAGAGEgrTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK10908 170 dalSEGILRLFEEFNRVGV--TVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-233 |
1.68e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 67.16 E-value: 1.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 3 PTVSASGLSLHY--GRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdPGSSRGRQEVRRR 79
Cdd:PRK11160 337 VSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEkVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ-PIADYSEAALRQA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTpgfhpdftafefVD-YVAILKE---LADRRERHREVRRVLEEVDL--------------GEvRGRrikKLSGG 141
Cdd:PRK11160 416 ISVVSQR------------VHlFSATLRDnllLAAPNASDEALIEVLQQVGLeklleddkglnawlGE-GGR---QLSGG 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 142 MRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLcHRVIVMAAGAVRFDGTPA 221
Cdd:PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQ 558
|
250
....*....|..
gi 7636021 222 ELTARaAGRVWS 233
Cdd:PRK11160 559 ELLAQ-QGRYYQ 569
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
5-169 |
1.85e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 67.28 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG--VTgLLGPNGAGKTTLLRVLATAVPADRGAFtVLGHDPGSSRgrqevrrrlgy 82
Cdd:PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNerVC-LVGRNGAGKSTLMKILNGEVLLDDGRI-IYEQDLIVAR----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LPQTPGFHPDFTAFefvDYVAI-LKELADRRERHREVRRVLEE-------VDLGEVRGR-----------RIKK------ 137
Cdd:PRK11147 71 LQQDPPRNVEGTVY---DFVAEgIEEQAEYLKRYHDISHLVETdpseknlNELAKLQEQldhhnlwqlenRINEvlaqlg 147
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 7636021 138 ---------LSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PRK11147 148 ldpdaalssLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-202 |
1.94e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 65.83 E-value: 1.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAD-----RGAFTVLGHDPGSSR-GR 73
Cdd:PRK14258 4 LIPAIKVNNLSFYYDTQKILEGVSMEIYQSkVTAIIGPSGCGKSTFLKCLNRMNELEsevrvEGRVEFFNQNIYERRvNL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 74 QEVRRRLGYLPQTPGFHPdFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRGRRIKK----LSGGMRQRVALA 149
Cdd:PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAG--EGRTVLLSTHQTEDVAML 202
Cdd:PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlrSELTMVIVSHNLHQVSRL 217
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
20-231 |
3.39e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 65.11 E-value: 3.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQEVRRRLGYLPQTPgfHPDFTAFEF 98
Cdd:PRK13642 23 LNGVSFSITKGEwVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG-ELLTAENVWNLRRKIGMVFQNP--DNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 99 VDYVAILKELAD--RRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRF 176
Cdd:PRK13642 100 EDDVAFGMENQGipREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 177 RELIAGAGEGR--TVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAELTARAAGRV 231
Cdd:PRK13642 180 MRVIHEIKEKYqlTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDMV 235
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-253 |
6.07e-12 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 65.90 E-value: 6.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY----GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQE 75
Cdd:PRK10535 1 MTALLELKDIRRSYpsgeEQVEVLKGISLDIYAGeMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 76 VRRR---LGYLPQTPGFHPDFTAFEFVDYVAILKELAdRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAAL 152
Cdd:PRK10535 81 AQLRrehFGFIFQRYHLLSHLTAAQNVEVPAVYAGLE-RKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 153 VGDPGFLVLDEPTVGLDP---EQRM----RFREliagagEGRTVLLSTHQTEdVAMLCHRVIVMAAGAVRFDgTPAELTA 225
Cdd:PRK10535 160 MNGGQVILADEPTGALDShsgEEVMailhQLRD------RGHTVIIVTHDPQ-VAAQAERVIEIRDGEIVRN-PPAQEKV 231
|
250 260
....*....|....*....|....*...
gi 7636021 226 RAAGRVWSSTEKDPgakaGWRTGTGSFR 253
Cdd:PRK10535 232 NVAGGTEPVVNTAS----GWRQFVSGFR 255
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
133-228 |
1.39e-11 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 64.09 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 133 RRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQR--MRF------RELiagageGRTVLLSTH-QTEdvAM-L 202
Cdd:PRK11650 130 RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRvqMRLeiqrlhRRL------KTTSLYVTHdQVE--AMtL 201
|
90 100
....*....|....*....|....*.
gi 7636021 203 CHRVIVMAAGAVRFDGTPAELTARAA 228
Cdd:PRK11650 202 ADRVVVMNGGVAEQIGTPVEVYEKPA 227
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
6-197 |
2.02e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 62.28 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 6 SASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVP--ADRGAFTVLGHDPGssrgrqevrrrlgy 82
Cdd:COG2401 32 EAFGVELRVVERYVLRDLNLEIEPGeIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPDNQFG-------------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 lPQTPGfhpdftafefVDYVAILKELADRRERhrevrrvLEEVDLGEV---RgRRIKKLSGGMRQRVALAAALVGDPGFL 159
Cdd:COG2401 98 -REASL----------IDAIGRKGDFKDAVEL-------LNAVGLSDAvlwL-RRFKELSTGQKFRFRLALLLAERPKLL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 7636021 160 VLDEPTVGLDPEQRMR----FRELIAGAgeGRTVLLSTHQTE 197
Cdd:COG2401 159 VIDEFCSHLDRQTAKRvarnLQKLARRA--GITLVVATHHYD 198
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
13-225 |
2.09e-11 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 63.96 E-value: 2.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 13 HYGRTR--ALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdPGSSRGRQEVRRRLGYLPQTPGF 89
Cdd:PRK10789 322 TYPQTDhpALENVNFTLKPGQMlGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDI-PLTKLQLDSWRSRLAVVSQTPFL 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 ------------HPDFTAFEfVDYVAILKELADRRERhrevrrvLEEVDLGEVrGRRIKKLSGGMRQRVALAAALVGDPG 157
Cdd:PRK10789 401 fsdtvannialgRPDATQQE-IEHVARLASVHDDILR-------LPQGYDTEV-GERGVMLSGGQKQRISIARALLLNAE 471
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 158 FLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQ----TEdvamlCHRVIVMAAGAVRFDGTPAELTA 225
Cdd:PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRlsalTE-----ASEILVMQHGHIAQRGNHDQLAQ 538
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-226 |
2.37e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 63.94 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYG----RTRALDDVSLRLTPGVT-GLLGPNGAGKT----TLLRVLATAVPADRGAFTVLGHD--PGS 69
Cdd:COG4172 3 SMPLLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETlALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDllGLS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 70 SRGRQEVR-RRLGYLPQTP--GFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGEVRgRRIKK----LSGGM 142
Cdd:COG4172 83 ERELRRIRgNRIAMIFQEPmtSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPE-RRLDAyphqLSGGQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 143 RQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHqteD---VAMLCHRVIVMAAGAVRFD 217
Cdd:COG4172 162 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDlqRELGMALLLITH---DlgvVRRFADRVAVMRQGEIVEQ 238
|
....*....
gi 7636021 218 GTPAELTAR 226
Cdd:COG4172 239 GPTAELFAA 247
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
122-212 |
2.52e-11 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 63.20 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 122 LEEVDLGEVRgRRIK----KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD---PEQRMRF-----RELiagageGRTV 189
Cdd:PRK09473 143 LDAVKMPEAR-KRMKmyphEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDvtvQAQIMTLlnelkREF------NTAI 215
|
90 100
....*....|....*....|...
gi 7636021 190 LLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK09473 216 IMITHDLGVVAGICDKVLVMYAG 238
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-223 |
2.57e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 62.37 E-value: 2.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHYGRTRALDDVSLRL-TPGVTGLLGPNGAGKTTLLRVLA-------TAVPADrGAFTVLGHDPGSSRGRQeVRRR 79
Cdd:PRK14246 14 SRLYLYINDKAILKDITIKIpNNSIFGIMGPSGSGKSTLLKVLNrlieiydSKIKVD-GKVLYFGKDIFQIDAIK-LRKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQTPGFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDL-GEVRGR---RIKKLSGGMRQRVALAAALVGD 155
Cdd:PRK14246 92 VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwKEVYDRlnsPASQLSGGQQQRLTIARALALK 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 156 PGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PRK14246 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-171 |
5.75e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 62.83 E-value: 5.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVlghdpGSSrgrqeVrrRLGYL 83
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGgIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-----GET-----V--KLAYV 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQT-PGFHPDFTAFEfvdyvailkELADrrerhrevrrVLEEVDLG--EVRGR---------------RIKKLSGGMRQR 145
Cdd:PRK11819 393 DQSrDALDPNKTVWE---------EISG----------GLDIIKVGnrEIPSRayvgrfnfkggdqqkKVGVLSGGERNR 453
|
170 180
....*....|....*....|....*.
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPE 171
Cdd:PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVE 479
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
16-195 |
6.79e-11 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 62.94 E-value: 6.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 16 RTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLAtavpadrGAFTVlGHDPGSSR-----GRQEVRRRL-GYLPQTPG 88
Cdd:PLN03140 892 RLQLLREVTGAFRPGVlTALMGVSGAGKTTLMDVLA-------GRKTG-GYIEGDIRisgfpKKQETFARIsGYCEQNDI 963
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 FHPDFTAFEFVDYVAIL---KELADRRERHREVRRvLEEVDLGEVRGR-----RIKKLSGGMRQRVALAAALVGDPGFLV 160
Cdd:PLN03140 964 HSPQVTVRESLIYSAFLrlpKEVSKEEKMMFVDEV-MELVELDNLKDAivglpGVTGLSTEQRKRLTIAVELVANPSIIF 1042
|
170 180 190
....*....|....*....|....*....|....*.
gi 7636021 161 LDEPTVGLDPE-QRMRFRELIAGAGEGRTVLLSTHQ 195
Cdd:PLN03140 1043 MDEPTSGLDARaAAIVMRTVRNTVDTGRTVVCTIHQ 1078
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
20-184 |
1.90e-10 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 58.32 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGVTGLL-GPNGAGKTTLLRVLATAVPADRGAFTVLGHdpgssrgrqevrRRLGYLPQTPGFhPDFTafef 98
Cdd:cd03223 17 LKDLSFEIKPGDRLLItGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYL-PLGT---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 99 vdyvaiLKELadrrerhrevrrvleevdlgevrgrrI-----KKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQR 173
Cdd:cd03223 80 ------LREQ--------------------------LiypwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127
|
170
....*....|.
gi 7636021 174 MRFRELIAGAG 184
Cdd:cd03223 128 DRLYQLLKELG 138
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
20-230 |
1.90e-10 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 61.33 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLAtavpadrGAFTVlghdpgsSRGRQEVRRRLGYLPQTPG---------- 88
Cdd:PTZ00243 676 LRDVSVSVPRGkLTVVLGATGSGKSTLLQSLL-------SQFEI-------SEGRVWAERSIAYVPQQAWimnatvrgni 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 --FHPDFTAfEFVDYVAILKELADRRERHREVrrvleEVDLGEvRGrriKKLSGGMRQRVALAAALVGDPGFLVLDEPTV 166
Cdd:PTZ00243 742 lfFDEEDAA-RLADAVRVSQLEADLAQLGGGL-----ETEIGE-KG---VNLSGGQKARVSLARAVYANRDVYLLDDPLS 811
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 167 GLDPEQRMRF-RELIAGAGEGRTVLLSTHQTEDVAMLCHrVIVMAAGAVRFDG-------TPAELTARAAGR 230
Cdd:PTZ00243 812 ALDAHVGERVvEECFLGALAGKTRVLATHQVHVVPRADY-VVALGDGRVEFSGssadfmrTSLYATLAAELK 882
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-212 |
2.43e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.79 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-----PGSSrgrQ 74
Cdd:PRK10762 1 MQALLQLKGIDKAFPGVKALSGAALNVYPGrVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEvtfngPKSS---Q 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 75 E-----VRRRLGYLPQTPGFHPDFTAFEFV------DYVAILKElADrrerhrevrRVLEEVDLGEVRGRRIKKLSGGMR 143
Cdd:PRK10762 78 EagigiIHQELNLIPQLTIAENIFLGREFVnrfgriDWKKMYAE-AD---------KLLARLNLRFSSDKLVGELSIGEQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 144 QRVALAAALVGDPGFLVLDEPTVGL-DPEQRMRF---RELIAgagEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK10762 148 QMVEIAKVLSFESKVIIMDEPTDALtDTETESLFrviRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
137-223 |
2.83e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 60.14 E-value: 2.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELI--AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLleLQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
....*....
gi 7636021 215 RFDGTPAEL 223
Cdd:PRK11022 233 VETGKAHDI 241
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-226 |
5.01e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 60.37 E-value: 5.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPGV----------------TGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYL 83
Cdd:PLN03232 1237 FEDVHLRYRPGLppvlhglsffvspsekVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV-AKFGLTDLRRVLSII 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGF--------------HPDFTAFEFVDYvAILKELADRRERHREVrrvlEEVDLGEvrgrrikKLSGGMRQRVALA 149
Cdd:PLN03232 1316 PQSPVLfsgtvrfnidpfseHNDADLWEALER-AHIKDVIDRNPFGLDA----EVSEGGE-------NFSVGQRQLLSLA 1383
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 150 AALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTPAELTAR 226
Cdd:PLN03232 1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSR 1459
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
14-212 |
5.05e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 59.64 E-value: 5.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVP-ADRGAFTVLGHDPGSSRGRQEVRRRLGYLPQTpgFHP 91
Cdd:PRK10938 270 YNDRPILHNLSWQVNPGEHwQIVGPNGAGKSTLLSLITGDHPqGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS--LHL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 92 DF----TAFE-----FVDYVAILKELADRRERHREvrrvlEEVDLGEVRGRRIKK----LSGGmRQRVALAA-ALVGDPG 157
Cdd:PRK10938 348 DYrvstSVRNvilsgFFDSIGIYQAVSDRQQKLAQ-----QWLDILGIDKRTADApfhsLSWG-QQRLALIVrALVKHPT 421
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7636021 158 FLVLDEPTVGLDPEQRM---RFRE-LIagaGEGRTVLL-STHQTEDvAMLC--HRVIVMAAG 212
Cdd:PRK10938 422 LLILDEPLQGLDPLNRQlvrRFVDvLI---SEGETQLLfVSHHAED-APACitHRLEFVPDG 479
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
18-195 |
6.83e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 59.74 E-value: 6.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVpaDRGAFTVlGHDPGSSRGRQE-VRRRLGY-------LPQT-- 86
Cdd:TIGR00956 777 VILNNVDGWVKPGtLTALMGASGAGKTTLLNVLAERV--TTGVITG-GDRLVNGRPLDSsFQRSIGYvqqqdlhLPTStv 853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 ------------PGFHPDFTAFEFVDYVAILKELADrrerhrevrrvLEEVDLGEVRgrriKKLSGGMRQRVALAAALVG 154
Cdd:TIGR00956 854 reslrfsaylrqPKSVSKSEKMEYVEEVIKLLEMES-----------YADAVVGVPG----EGLNVEQRKRLTIGVELVA 918
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 7636021 155 DPGFLV-LDEPTVGLDPEQR---MRF-RELiagAGEGRTVLLSTHQ 195
Cdd:TIGR00956 919 KPKLLLfLDEPTSGLDSQTAwsiCKLmRKL---ADHGQAILCTIHQ 961
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-169 |
7.27e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 58.82 E-value: 7.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 1 MTPTVSASGLSLHY----------GRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD-PG 68
Cdd:PRK11308 2 QQPLLQAIDLKKHYpvkrglfkpeRLVKALDGVSFTLERGKTlAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDlLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 69 SSRG-----RQEV-------------RRRLGYLPQTP-GFHPDFTAFEFVDYVAILkeladrrerhrevrrvLEEVDL-G 128
Cdd:PRK11308 82 ADPEaqkllRQKIqivfqnpygslnpRKKVGQILEEPlLINTSLSAAERREKALAM----------------MAKVGLrP 145
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 7636021 129 EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PRK11308 146 EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
18-169 |
1.20e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 58.18 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHD--PGSSRGRQEVRRRLGYLPQTP------- 87
Cdd:PRK15079 35 KAVDGVTLRLYEGETlGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDllGMKDDEWRAVRSDIQMIFQDPlaslnpr 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 ------------GFHPDFTAFEFVDYV-AILKELADrrerhrevrrvleevdLGEVRGRRIKKLSGGMRQRVALAAALVG 154
Cdd:PRK15079 115 mtigeiiaeplrTYHPKLSRQEVKDRVkAMMLKVGL----------------LPNLINRYPHEFSGGQCQRIGIARALIL 178
|
170
....*....|....*
gi 7636021 155 DPGFLVLDEPTVGLD 169
Cdd:PRK15079 179 EPKLIICDEPVSALD 193
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
20-213 |
1.45e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 56.38 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLA--TAVPADRGAFTVLGHD----PGSSRgrqeVRRRLGYLPQTPgfhPD 92
Cdd:cd03217 16 LKGVNLTIKKGeVHALMGPNGSGKSTLAKTIMghPKYEVTEGEILFKGEDitdlPPEER----ARLGIFLAFQYP---PE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEFVDYvailkeladrrerhrevrrvLEEVDLGevrgrrikkLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:cd03217 89 IPGVKNADF--------------------LRYVNEG---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 7636021 173 -RMRFRELIAGAGEGRTVLLSTH--------QTEDVAMLCHRVIVMAAGA 213
Cdd:cd03217 140 lRLVAEVINKLREEGKSVLIITHyqrlldyiKPDRVHVLYDGRIVKSGDK 189
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
20-223 |
1.55e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 58.64 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSrGRQEVRRRLGYLPQTPGFHpDFTAFEF 98
Cdd:PTZ00243 1326 LRGVSFRIAPReKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY-GLRELRRQFSMIPQDPVLF-DGTVRQN 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 99 VDyvaILKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGG------MRQRVALAAALVG-DPGFLVLDEPTVGLDPE 171
Cdd:PTZ00243 1404 VD---PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGsnysvgQRQLMCMARALLKkGSGFILMDEATANIDPA 1480
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 172 QRMRFRELIAGAGEGRTVLLSTHQTEDVAMlCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PTZ00243 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPREL 1531
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
21-207 |
1.69e-09 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 56.46 E-value: 1.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 21 DDVSLRLTPGVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLG-HDP-----GSSR-----------GRQ-EVRRRLGY 82
Cdd:cd03240 14 ERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGaHDPklireGEVRaqvklafenanGKKyTITRSLAI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 83 LpqtpgfhpdftafefvDYVAILKEladrrerhrevrrvlEEVD--LGEVRGRrikkLSGGMRQ------RVALAAALVG 154
Cdd:cd03240 94 L----------------ENVIFCHQ---------------GESNwpLLDMRGR----CSGGEKVlasliiRLALAETFGS 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 155 DPGFLVLDEPTVGLDPEQR-MRFRELIAGA--GEGRTVLLSTHQTEDVAMLCH--RVI 207
Cdd:cd03240 139 NCGILALDEPTTNLDEENIeESLAEIIEERksQKNFQLIVITHDEELVDAADHiyRVE 196
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
22-228 |
2.51e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 57.49 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGYLPQT---PGFHPDFTAFE 97
Cdd:PRK09700 281 DISFSVCRGeILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESrrdNGFFPNFSIAQ 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 fvdYVAILKELADRR-ERHREVRRVLEEVDLGEVR-----------GRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPT 165
Cdd:PRK09700 361 ---NMAISRSLKDGGyKGAMGLFHEVDEQRTAENQrellalkchsvNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 166 VGLD----PEQRMRFRELiagAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVrfdgtPAELTARAA 228
Cdd:PRK09700 438 RGIDvgakAEIYKVMRQL---ADDGKVILMVSSELPEIITVCDRIAVFCEGRL-----TQILTNRDD 496
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
10-215 |
2.76e-09 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 56.79 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHY--GRTRALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADrGAFTVLGHDpGSSRGRQEVRRRLGYLPQ- 85
Cdd:cd03289 8 LTAKYteGGNAVLENISFSISPGQRvGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVS-WNSVPLQKWRKAFGVIPQk 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 ----TPGFHPDFTAFEFVDYVAILKeLADRRERHREVRRVLEEVDLGEVRGRRIkkLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:cd03289 86 vfifSGTFRKNLDPYGKWSDEEIWK-VAEEVGLKSVIEQFPGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 162 DEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEdvAML-CHRVIVMAAGAVR 215
Cdd:cd03289 163 DEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE--AMLeCQRFLVIEENKVR 215
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
22-212 |
3.54e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 57.37 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEVRRRLGYLP---QTPGFHPD----- 92
Cdd:PRK15439 281 NISLEVRAGeILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPedrQSSGLYLDaplaw 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 ----FTAFEFVDYVAILKELADRRERHREVRRVLEEVDlgevrgRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGL 168
Cdd:PRK15439 361 nvcaLTHNRRGFWIKPARENAVLERYRRALNIKFNHAE------QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 7636021 169 DPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK15439 435 DVSARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
5-219 |
3.58e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 57.21 E-value: 3.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHYGRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGaftvlghdpgssrgrqEVR----RR 79
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGErLAIIGENGVGKTTLLRTLVGELEPDSG----------------TVKwsenAN 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 LGYLPQ--TPGFHPDFTAFefvDYVAILKELADrrerhrevrrvleevDLGEVRG-------------RRIKKLSGGMRQ 144
Cdd:PRK15064 384 IGYYAQdhAYDFENDLTLF---DWMSQWRQEGD---------------DEQAVRGtlgrllfsqddikKSVKVLSGGEKG 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 145 RVALAAALVGDPGFLVLDEPTVGLDpeqrMRFRELIAGAGE---GrTVLLSTHQTEDVAMLCHRVI-VMAAGAVRFDGT 219
Cdd:PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMD----MESIESLNMALEkyeG-TLIFVSHDREFVSSLATRIIeITPDGVVDFSGT 519
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
16-224 |
3.84e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.14 E-value: 3.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 16 RTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQ-----------EVRRRLGYL 83
Cdd:TIGR02633 272 HRKRVDDVSFSLRRGeILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAqairagiamvpEDRKRHGIV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTpGFHPDFT-----AFEFVDYVAILKELADRRERHREVRRVLEEVDLGevrgrrIKKLSGGMRQRVALAAALVGDPGF 158
Cdd:TIGR02633 352 PIL-GVGKNITlsvlkSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP------IGRLSGGNQQKAVLAKMLLTNPRV 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 159 LVLDEPTVGLDPEQRMRFRELI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAELT 224
Cdd:TIGR02633 425 LILDEPTRGVDVGAKYEIYKLInQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALT 491
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
9-227 |
6.94e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 56.84 E-value: 6.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHY---GRTrALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADrGAFTVLGHDpGSSRGRQEVRRRLGYLP 84
Cdd:TIGR01271 1222 GLTAKYteaGRA-VLQDLSFSVEGGQRvGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVS-WNSVTLQTWRKAFGVIP 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 Q-----TPGFHPDFTAFEFVDYVAILKeLADRRERHREVRRVLEEVDLGEVRGRRIkkLSGGMRQRVALAAALVGDPGFL 159
Cdd:TIGR01271 1299 QkvfifSGTFRKNLDPYEQWSDEEIWK-VAEEVGLKSVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKIL 1375
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 160 VLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEdvAML-CHRVIVMAAGAVR-FDGTPAELTARA 227
Cdd:TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE--ALLeCQQFLVIEGSSVKqYDSIQKLLNETS 1443
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
22-234 |
7.30e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 56.04 E-value: 7.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRL-TPGVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPGSSRGRQEV---RRRLGYLPQTPGFHPDFT--- 94
Cdd:PRK11144 16 TVNLTLpAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLppeKRRIGYVFQDARLFPHYKvrg 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 95 ----------AFEFVDYVAILkeladrrerhrevrrvleevDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK11144 96 nlrygmaksmVAQFDKIVALL--------------------GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 165 TVGLD-PeqrmRFRELIAG----AGEGRT-VLLSTHQTEDVAMLCHRVIVMAAGAVRFDGTPAEltaraagrVWSS 234
Cdd:PRK11144 156 LASLDlP----RKRELLPYlerlAREINIpILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE--------VWAS 219
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
5-212 |
8.27e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.02 E-value: 8.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 5 VSASGLSLHY----GRTRALDDVSLRLTPGVT-GLLGPNGAGKT----TLLRVLATA---VPAD-----RGAFTVLGHDP 67
Cdd:PRK10261 13 LAVENLNIAFmqeqQKIAAVRNLSFSLQRGETlAIVGESGSGKSvtalALMRLLEQAgglVQCDkmllrRRSRQVIELSE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 68 GSSRGRQEVR-RRLGYLPQTP--GFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEVDLGE---VRGRRIKKLSGG 141
Cdd:PRK10261 93 QSAAQMRHVRgADMAMIFQEPmtSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEaqtILSRYPHQLSGG 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 142 MRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRT--VLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK10261 173 MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSmgVIFITHDMGVVAEIADRVLVMYQG 245
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
34-174 |
1.35e-08 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 55.53 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADRGAFTVlghdpgssrgrqEVRRRLGYLPQTPGF----------HPDfTAFEFVDyva 103
Cdd:TIGR00954 483 ICGPNGCGKSSLFRILGELWPVYGGRLTK------------PAKGKLFYVPQRPYMtlgtlrdqiiYPD-SSEDMKR--- 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 104 ilKELADRRERHRevrrvLEEVDLGEVRGRRI---------KKLSGGMRQRVALAAALVGDPGFLVLDEPT--VGLDPEQ 172
Cdd:TIGR00954 547 --RGLSDKDLEQI-----LDNVQLTHILEREGgwsavqdwmDVLSGGEKQRIAMARLFYHKPQFAILDECTsaVSVDVEG 619
|
..
gi 7636021 173 RM 174
Cdd:TIGR00954 620 YM 621
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
9-212 |
1.39e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.22 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 9 GLSLHYGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAD--RGAFTVLGHDPGSSRGRQEVRRRLGYLPQ 85
Cdd:TIGR02633 6 GIVKTFGGVKALDGIDLEVRPGeCVGLCGENGAGKSTLMKILSGVYPHGtwDGEIYWSGSPLKASNIRDTERAGIVIIHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAFE--FVDYVAILK-ELADRRERHREVRRVLEEVDLGEVR-GRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:TIGR02633 86 ELTLVPELSVAEniFLGNEITLPgGRMAYNAMYLRAKNLLRELQLDADNvTRPVGDYGGGQQQLVEIAKALNKQARLLIL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 162 DEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:TIGR02633 166 DEPSSSLTEKETEILLDIIRDlKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
19-214 |
1.69e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 55.25 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH--DPGSSRGRQEVRRRLGYLPQTP--GFHPDF 93
Cdd:PRK10261 339 AVEKVSFDLWPGETlSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQriDTLSPGKLQALRRDIQFIFQDPyaSLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEFVDYVAILKELADRRERHREVRRVLEEVDL-GEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQ 172
Cdd:PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 7636021 173 RMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAAGAV 214
Cdd:PRK10261 499 RGQIINLLLDLQRdfGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
20-169 |
2.17e-08 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 53.04 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAD---RGAFTVLGHDPGSSRGRQevRRRLGYLPQTPGFHPDFTA 95
Cdd:cd03233 23 LKDFSGVVKPGeMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKY--PGEIIYVSEEDVHFPTLTV 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 96 FEFVDYVAILKeladrrerhrevrrvleevdlGE--VRGrrikkLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:cd03233 101 RETLDFALRCK---------------------GNefVRG-----ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
133-227 |
2.28e-08 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 55.22 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 133 RRIKKLSGGMRQRVALAAALVGD-PGFL-VLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQtEDVAMLCHRVIVM 209
Cdd:PRK00635 472 RALATLSGGEQERTALAKHLGAElIGITyILDEPSIGLHPQDTHKLINVIKKlRDQGNTVLLVEHD-EQMISLADRIIDI 550
|
90 100
....*....|....*....|....
gi 7636021 210 AAGA------VRFDGTPAELTARA 227
Cdd:PRK00635 551 GPGAgifggeVLFNGSPREFLAKS 574
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
20-224 |
3.00e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.60 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLatavpadrgaftvLGHDPGSSRGRQEVRRRLGYLPQTPG---------- 88
Cdd:PLN03232 633 LSDINLEIPVGsLVAIVGGTGEGKTSLISAM-------------LGELSHAETSSVVIRGSVAYVPQVSWifnatvreni 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 -FHPDFTAFEF---VDYVAILKELadrrerhrevrRVLEEVDLGEVrGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PLN03232 700 lFGSDFESERYwraIDVTALQHDL-----------DLLPGRDLTEI-GERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7636021 165 TVGLDPE-QRMRFRELIAGAGEGRTVLLSTHQTEDVAMLcHRVIVMAAGAVRFDGTPAELT 224
Cdd:PLN03232 768 LSALDAHvAHQVFDSCMKDELKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELS 827
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
135-208 |
3.01e-08 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 51.98 E-value: 3.01e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 135 IKKLSGGMRQRVALAAAL----VGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIV 208
Cdd:cd03227 75 RLQLSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILEhLVKGAQVIVITHLPELAELADKLIHI 153
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-212 |
5.26e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 53.96 E-value: 5.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLA-TAVPADRGAFTVLGHDpgsSRGRQEVRRR----LGYLPQTPGFHPDF 93
Cdd:TIGR00956 77 LKPMDGLIKPGeLTVVLGRPGSGCSTLLKTIAsNTDGFHIGVEGVITYD---GITPEEIKKHyrgdVVYNAETDVHFPHL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 94 TAFEFVDYVAILKELADRRERHREVRRVLEEVDL------------GEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVymatyglshtrnTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 162 DEPTVGLDPEQRMRF-RELIAGAGEGR-TVLLSTHQ-TEDVAMLCHRVIVMAAG 212
Cdd:TIGR00956 234 DNATRGLDSATALEFiRALKTSANILDtTPLVAIYQcSQDAYELFDKVIVLYEG 287
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
131-233 |
6.28e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.47 E-value: 6.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 131 RGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVM 209
Cdd:PRK10762 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQfKAEGLSIILVSSEMPEVLGMSDRILVM 468
|
90 100
....*....|....*....|....*....
gi 7636021 210 AAGAV-----RFDGTPAELTARAAGRVWS 233
Cdd:PRK10762 469 HEGRIsgeftREQATQEKLMAAAVGKLNR 497
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-223 |
7.68e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 53.59 E-value: 7.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 22 DVSLRLTP-------GVT---------GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQ 85
Cdd:PLN03130 1242 DVVLRYRPelppvlhGLSfeispsekvGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDI-SKFGLMDLRKVLGIIPQ 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFHPDFTAF------EFVDyvAILKEladrrerhrevrrVLEEVDLGEVRGRRIKKL-----------SGGMRQRVAL 148
Cdd:PLN03130 1321 APVLFSGTVRFnldpfnEHND--ADLWE-------------SLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSL 1385
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 149 AAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTPAEL 223
Cdd:PLN03130 1386 ARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILVLDAGRVVEFDTPENL 1459
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
18-212 |
8.12e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.19 E-value: 8.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH-----------DPGSSRGRQE---VRRR--- 79
Cdd:PRK10982 12 KALDNVNLKVRPHsIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKeidfksskealENGISMVHQElnlVLQRsvm 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 80 ----LGYLPqTPGFhpdftafeFVDYVAILKEladrrerhreVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGD 155
Cdd:PRK10982 92 dnmwLGRYP-TKGM--------FVDQDKMYRD----------TKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 156 PGFLVLDEPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKErGCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
34-194 |
1.00e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.03 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 34 LLGPNGAGKTTLLRVLATAVPADRGAFTVLGH-------------DPGSS------RGRQEV------RRRLGYLpQTPG 88
Cdd:PRK11147 350 LIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKlevayfdqhraelDPEKTvmdnlaEGKQEVmvngrpRHVLGYL-QDFL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 FHPDftafefvdyvailkeladrrerhrevrrvleevdlgevRGRR-IKKLSGGMRQRVALAAALVGDPGFLVLDEPTVG 167
Cdd:PRK11147 429 FHPK--------------------------------------RAMTpVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470
|
170 180
....*....|....*....|....*..
gi 7636021 168 LDPEQRMRFRELIAGAgEGrTVLLSTH 194
Cdd:PRK11147 471 LDVETLELLEELLDSY-QG-TVLLVSH 495
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
122-223 |
1.10e-07 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 52.41 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 122 LEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDP--EQRMRFrELIAGAGE-GRTVLLSTHQTeD 198
Cdd:COG4175 148 LELVGLAGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPliRREMQD-ELLELQAKlKKTIVFITHDL-D 225
|
90 100
....*....|....*....|....*.
gi 7636021 199 VAM-LCHRVIVMAAGAVRFDGTPAEL 223
Cdd:COG4175 226 EALrLGDRIAIMKDGRIVQIGTPEEI 251
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-240 |
1.24e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 53.03 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHDPgSSRGRQEVRRRLGYLPQTP---------GF 89
Cdd:TIGR00957 1302 LRHINVTIHGGeKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI-AKIGLHDLRFKITIIPQDPvlfsgslrmNL 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 90 HPdFTAFEFVDYVAILkELADRRERHREVRRVL--EEVDLGEvrgrrikKLSGGMRQRVALAAALVGDPGFLVLDEPTVG 167
Cdd:TIGR00957 1381 DP-FSQYSDEEVWWAL-ELAHLKTFVSALPDKLdhECAEGGE-------NLSVGQRQLVCLARALLRKTKILVLDEATAA 1451
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7636021 168 LDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVRFDGTPAELTARAAgrVWSSTEKDPG 240
Cdd:TIGR00957 1452 VDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI-MDYTRVIVLDKGEVAEFGAPSNLLQQRG--IFYSMAKDAG 1521
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
138-226 |
1.57e-07 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 52.33 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 138 LSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSTHQTEDvamlchRVIVMAAG 212
Cdd:PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLviahrLSTIEKAD------EILVVEDG 554
|
90
....*....|....
gi 7636021 213 AVRFDGTPAELTAR 226
Cdd:PRK11176 555 EIVERGTHAELLAQ 568
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
21-180 |
1.79e-07 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 50.39 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 21 DDVSLRLTPGVTGLLGPNGAGKTTLLRVLATA-------VPADRGAFTVLGHDPGS-------SRGRQEVRRRLGylpqt 86
Cdd:COG0419 15 DTETIDFDDGLNLIVGPNGAGKSTILEAIRYAlygkarsRSKLRSDLINVGSEEASvelefehGGKRYRIERRQG----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 pgfhpDFTAF----------------------EFVDYVAILKELADRRERHREVRRVLEEVDLGEVRG-RRIKKLSGGMR 143
Cdd:COG0419 90 -----EFAEFleakpserkealkrllgleiyeELKERLKELEEALESALEELAELQKLKQEILAQLSGlDPIETLSGGER 164
|
170 180 190
....*....|....*....|....*....|....*..
gi 7636021 144 QRVALAAALVgdpgfLVLDepTVGLDPEQRMRFRELI 180
Cdd:COG0419 165 LRLALADLLS-----LILD--FGSLDEERLERLLDAL 194
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
2-178 |
1.96e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 52.09 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 2 TPTVSASGLSLHYGRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLAtavpadrGAFTVLGHDPGSSRGrqevrRRL 80
Cdd:PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSrIGLLGRNGAGKSTLIKLLA-------GELAPVSGEIGLAKG-----IKL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 81 GYLPQ----------TPGFH-----PDFTAFEFVDYVAILKELADrrerhrevrrvleevDLGEVRGRrikkLSGGMRQR 145
Cdd:PRK10636 378 GYFAQhqleflradeSPLQHlarlaPQELEQKLRDYLGGFGFQGD---------------KVTEETRR----FSGGEKAR 438
|
170 180 190
....*....|....*....|....*....|...
gi 7636021 146 VALAAALVGDPGFLVLDEPTVGLDPEQRMRFRE 178
Cdd:PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
8-169 |
2.11e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 51.71 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 8 SGLSLHYGRTRALDDVSLRLTPGV-TGLLGPNGAGKTTLLRVLATAVPADRGAFTVlghdPGSsrgrqevrRRLGYLPQ- 85
Cdd:PRK10636 5 SSLQIRRGVRVLLDNATATINPGQkVGLVGKNGCGKSTLLALLKNEISADGGSYTF----PGN--------WQLAWVNQe 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFhpDFTAFEFV-----DYVAILKELADRRE-----RHREVRRVLEEVDLGEVRGRR-----------------IKKL 138
Cdd:PRK10636 73 TPAL--PQPALEYVidgdrEYRQLEAQLHDANErndghAIATIHGKLDAIDAWTIRSRAasllhglgfsneqlerpVSDF 150
|
170 180 190
....*....|....*....|....*....|.
gi 7636021 139 SGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
134-224 |
2.11e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 51.85 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 134 RIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELI-AGAGEGRTVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK13549 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLInQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
|
90
....*....|..
gi 7636021 213 AVRFDGTPAELT 224
Cdd:PRK13549 482 KLKGDLINHNLT 493
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
122-219 |
3.59e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 49.24 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 122 LEEVDLGEVR-GRRIKKLSGGMRQRVALAAALVGDPG--FLVLDEPTVGLDPEQRMRFRELIAGAG-EGRTVLLSTHqte 197
Cdd:cd03238 71 LIDVGLGYLTlGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLIdLGNTVILIEH--- 147
|
90 100
....*....|....*....|....
gi 7636021 198 DVAMLCH--RVIVMAAGAVRFDGT 219
Cdd:cd03238 148 NLDVLSSadWIIDFGPGSGKSGGK 171
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
15-212 |
3.93e-07 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 50.67 E-value: 3.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATA------VPADRgaFTVLGHD----PGSSRgRQEVRRRLGYL 83
Cdd:COG4170 18 GRVKAVDRVSLTLNEGeIRGLVGESGSGKSLIAKAICGItkdnwhVTADR--FRWNGIDllklSPRER-RKIIGREIAMI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 84 PQTPGFHPDFTAfefvdyvAILKELadrrerhrevrrvLEEVDLGEVRG----------RRIKKL--------------- 138
Cdd:COG4170 95 FQEPSSCLDPSA-------KIGDQL-------------IEAIPSWTFKGkwwqrfkwrkKRAIELlhrvgikdhkdimns 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 139 -----SGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVMAA 211
Cdd:COG4170 155 yphelTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlqGTSILLISHDLESISQWADTITVLYC 234
|
.
gi 7636021 212 G 212
Cdd:COG4170 235 G 235
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
132-225 |
4.00e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 51.17 E-value: 4.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 132 GRRIKKLSGGMRQRVALA----AALVGdpGFLVLDEPTVGLDP-------EQRMRFRELiagageGRTVLLSTHQtEDVA 200
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLAtqigSGLTG--VLYVLDEPSIGLHQrdnrrliNTLKRLRDL------GNTLIVVEHD-EDTI 553
|
90 100 110
....*....|....*....|....*....|.
gi 7636021 201 MLCHRVIVMAAGA------VRFDGTPAELTA 225
Cdd:TIGR00630 554 RAADYVIDIGPGAgehggeVVASGTPEEILA 584
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
133-227 |
4.42e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.78 E-value: 4.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 133 RRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAA 211
Cdd:PRK10938 131 RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASlHQSGITLVLVLNRFDEIPDFVQFAGVLAD 210
|
90
....*....|....*.
gi 7636021 212 GAVRFDGTPAELTARA 227
Cdd:PRK10938 211 CTLAETGEREEILQQA 226
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
138-251 |
5.79e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 50.71 E-value: 5.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 138 LSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPE-QRMRFRELIAGAG--EGRTVLLSTH------QTeDVamlchrVIV 208
Cdd:TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHvGKHIFEHVIGPEGvlKNKTRILVTHgisylpQV-DV------IIV 833
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 7636021 209 MAAGAVRFDGTPAELTARAAG-----RVWSSTEKDPGAKAGWRTGTGS 251
Cdd:TIGR00957 834 MSGGKISEMGSYQELLQRDGAfaeflRTYAPDEQQGHLEDSWTALVSG 881
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
137-200 |
5.99e-07 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 50.08 E-value: 5.99e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7636021 137 KLSGGMRQRVALAAALVGD---PGFLVLDEPTVGLDPEQRMRFRELIA-GAGEGRTVLLSTHQTEDVA 200
Cdd:pfam13304 236 ELSDGTKRLLALLAALLSAlpkGGLLLIDEPESGLHPKLLRRLLELLKeLSRNGAQLILTTHSPLLLD 303
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
137-221 |
7.88e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 48.34 E-value: 7.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGE--GRTVLLSTHQTEDVAMLCHRVIVmaagav 214
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEegKKTALVVEHDLAVLDYLSDRIHV------ 144
|
....*..
gi 7636021 215 rFDGTPA 221
Cdd:cd03222 145 -FEGEPG 150
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
10-195 |
9.40e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 48.41 E-value: 9.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLHYGRTRALDDVSLRLTPGvtGLL---GPNGAGKTTLLRVLATAVPADRGAFTVLGHDpgSSRGRQEVRRRLGYLPQT 86
Cdd:PRK13540 7 LDFDYHDQPLLQQISFHLPAG--GLLhlkGSNGAGKTTLLKLIAGLLNPEKGEILFERQS--IKKDLCTYQKQLCFVGHR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 PGFHPDFTafefvdyvaiLKELADRRERHREVRRVLEEV----DLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLD 162
Cdd:PRK13540 83 SGINPYLT----------LRENCLYDIHFSPGAVGITELcrlfSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD 152
|
170 180 190
....*....|....*....|....*....|....
gi 7636021 163 EPTVGLDPEQRMRFRELI-AGAGEGRTVLLSTHQ 195
Cdd:PRK13540 153 EPLVALDELSLLTIITKIqEHRAKGGAVLLTSHQ 186
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
137-212 |
1.16e-06 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 49.32 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMR----FRELIAGAGEGrtVLLSTHQTEDVAMLCHRVIVMAAG 212
Cdd:PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQilqlLRELQQELNMG--LLFITHNLSIVRKLADRVAVMQNG 233
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-198 |
1.23e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.37 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 28 TPGVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLghDPGSSRGRQEVRRRLGYlpqtpgfhpdftafefvdyvailke 107
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLII------------------------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 108 ladrrerhrevrrvleevdlgevRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGA---- 183
Cdd:smart00382 54 -----------------------VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRllll 110
|
170
....*....|....*...
gi 7636021 184 ---GEGRTVLLSTHQTED 198
Cdd:smart00382 111 lksEKNLTVILTTNDEKD 128
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
10-195 |
1.69e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 47.56 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 10 LSLH----YGRTRALDDVSLRLTP-GVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVlghdpGSSRGRQEVRRRLGYLP 84
Cdd:PRK13541 2 LSLHqlqfNIEQKNLFDLSITFLPsAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY-----KNCNINNIAKPYCTYIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 85 QTPGFHPDFTAFEFvdyvaiLKELADRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PRK13541 77 HNLGLKLEMTVFEN------LKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150
|
170 180 190
....*....|....*....|....*....|..
gi 7636021 165 TVGLDPEQRMRFRELIA-GAGEGRTVLLSTHQ 195
Cdd:PRK13541 151 ETNLSKENRDLLNNLIVmKANSGGIVLLSSHL 182
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
19-225 |
1.88e-06 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 48.25 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPGVT-GLLGPNGAGKTTLLRVLATAVPADRGAFTVLGH--DPGSSRGRQEvRRRLGYLPQTPGFHPDFTA 95
Cdd:PRK15112 28 AVKPLSFTLREGQTlAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHplHFGDYSYRSQ-RIRMIFQDPSTSLNPRQRI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 96 FEFVDYVAILKELADRRERHREVRRVLEEVDL-GEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRM 174
Cdd:PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 175 RFRELIAGAGEGRTVLLsTHQTEDVAMLCH---RVIVMAAGAVRFDGTPAELTA 225
Cdd:PRK15112 187 QLINLMLELQEKQGISY-IYVTQHLGMMKHisdQVLVMHQGEVVERGSTADVLA 239
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
4-232 |
1.90e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 48.95 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTR-ALDDVSLRLTP-GVTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdPGSSRGRQEVRRRLG 81
Cdd:PRK10790 340 RIDIDNVSFAYRDDNlVLQNINLSVPSrGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR-PLSSLSHSVLRQGVA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDftafEFVDYVAILKELADRRERHRevrrvLEEVDLGE-VR----------GRRIKKLSGGMRQRVALAA 150
Cdd:PRK10790 419 MVQQDPVVLAD----TFLANVTLGRDISEEQVWQA-----LETVQLAElARslpdglytplGEQGNNLSVGQKQLLALAR 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 151 ALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVL-----LSTHQTEDVAMLCHRvivmaaGAVRFDGTPAELTA 225
Cdd:PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVviahrLSTIVEADTILVLHR------GQAVEQGTHQQLLA 563
|
....*..
gi 7636021 226 rAAGRVW 232
Cdd:PRK10790 564 -AQGRYW 569
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
14-168 |
2.34e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.39 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPadRGAFT---VLGHDPGSSRGRQEVRRR--------LG 81
Cdd:PRK13549 15 FGGVKALDNVSLKVRAGeIVSLCGENGAGKSTLMKVLSGVYP--HGTYEgeiIFEGEELQASNIRDTERAgiaiihqeLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 YLPQTPGFHPDF-----TAFEFVDYVAILKEladrrerhreVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDP 156
Cdd:PRK13549 93 LVKELSVLENIFlgneiTPGGIMDYDAMYLR----------AQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162
|
170
....*....|..
gi 7636021 157 GFLVLDEPTVGL 168
Cdd:PRK13549 163 RLLILDEPTASL 174
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
18-194 |
2.35e-06 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 48.07 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLLRVLATAVPADRGA------FtvlgHDPGSSRGRQ-----EVRRRLGYLPQT 86
Cdd:COG3593 12 RSIKDLSIELSDDLTVLVGENNSGKSSILEALRLLLGPSSSRkfdeedF----YLGDDPDLPEieielTFGSLLSRLLRL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 PGFHPDFTAF---------EFVDYVAILKELADRRERHREVRRVLE---------------EVDLGEVRGRRIKKLSGGM 142
Cdd:COG3593 88 LLKEEDKEELeealeelneELKEALKALNELLSEYLKELLDGLDLElelsldeledllkslSLRIEDGKELPLDRLGSGF 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 143 RQRVALAAALV-------GDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTH 194
Cdd:COG3593 168 QRLILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKElSEKPNQVIITTH 227
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
20-225 |
2.57e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 48.58 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRvlatavpadrgafTVLGHDPGSSRGRQEVRRRLGYLPQTPG---------- 88
Cdd:PLN03130 633 LSNINLDVPVGsLVAIVGSTGEGKTSLIS-------------AMLGELPPRSDASVVIRGTVAYVPQVSWifnatvrdni 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 89 -FHPDFTAFEF---VDYVAILKELAdrrerhrevrrVLEEVDLGEVrGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP 164
Cdd:PLN03130 700 lFGSPFDPERYeraIDVTALQHDLD-----------LLPGGDLTEI-GERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7636021 165 TVGLDPE-QRMRFRELIAGAGEGRTVLLSTHQtedVAMLCH--RVIVMAAGAVRFDGTPAELTA 225
Cdd:PLN03130 768 LSALDAHvGRQVFDKCIKDELRGKTRVLVTNQ---LHFLSQvdRIILVHEGMIKEEGTYEELSN 828
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
18-168 |
5.76e-06 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 47.48 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPAdrgaftvlghdpGSSRG----RQEVRRrlgylpqtpgFHpD 92
Cdd:NF040905 15 KALDDVNLSVREGeIHALCGENGAGKSTLMKVLSGVYPH------------GSYEGeilfDGEVCR----------FK-D 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 93 FTAFEFVDYVAILKELA-----------------------DRRERHREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALA 149
Cdd:NF040905 72 IRDSEALGIVIIHQELAlipylsiaeniflgnerakrgviDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIA 151
|
170
....*....|....*....
gi 7636021 150 AALVGDPGFLVLDEPTVGL 168
Cdd:NF040905 152 KALSKDVKLLILDEPTAAL 170
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
124-202 |
7.08e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 124 EVDLGEVRGRRIKKLSGGMR-Q-----RVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTE 197
Cdd:COG4717 545 KVDTEDGRTRPVEELSRGTReQlylalRLALAELLAGEPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHEE 624
|
....*
gi 7636021 198 DVAML 202
Cdd:COG4717 625 LVELF 629
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
122-219 |
8.28e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 45.71 E-value: 8.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 122 LEEVDLGEVR-GRRIKKLSGGMRQRVALAAAL-VGDPGFL-VLDEPTVGLDPEQRMRFRELIAGAGE-GRTVLLSTHQtE 197
Cdd:cd03270 121 LVDVGLGYLTlSRSAPTLSGGEAQRIRLATQIgSGLTGVLyVLDEPSIGLHPRDNDRLIETLKRLRDlGNTVLVVEHD-E 199
|
90 100
....*....|....*....|..
gi 7636021 198 DVAMLCHRVIVMAAGAVRFDGT 219
Cdd:cd03270 200 DTIRAADHVIDIGPGAGVHGGE 221
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
19-215 |
1.32e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 45.58 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 19 ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGHdpgssrgrqevrrrLGYLPQTPGFHPDFTAFE 97
Cdd:PRK13546 39 ALDDISLKAYEGdVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--------------VSVIAISAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 98 FVDYVAIL-----KELAdrrerhREVRRVLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP-TVG---- 167
Cdd:PRK13546 105 NIEFKMLCmgfkrKEIK------AMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAlSVGdqtf 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 168 ----LDPEQrmRFREliagagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVR 215
Cdd:PRK13546 179 aqkcLDKIY--EFKE------QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
15-223 |
1.44e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 45.95 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 15 GRTRALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATA------VPADRGAFT--------------VLGH-------- 65
Cdd:PRK15093 18 GWVKAVDRVSMTLTEGeIRGLVGESGSGKSLIAKAICGVtkdnwrVTADRMRFDdidllrlsprerrkLVGHnvsmifqe 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 66 -----DPGSSRGRQEVR------------RRLGYLPQTpgfhpdftAFEFVDYVAIlkeladrrerhrevrrvleeVDLG 128
Cdd:PRK15093 98 pqsclDPSERVGRQLMQnipgwtykgrwwQRFGWRKRR--------AIELLHRVGI--------------------KDHK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 129 EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIA--GAGEGRTVLLSTHQTEDVAMLCHRV 206
Cdd:PRK15093 150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTrlNQNNNTTILLISHDLQMLSQWADKI 229
|
250
....*....|....*..
gi 7636021 207 IVMAAGAVRFDGTPAEL 223
Cdd:PRK15093 230 NVLYCGQTVETAPSKEL 246
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
135-228 |
1.53e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 46.06 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 135 IKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGA 213
Cdd:PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYElAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
90
....*....|....*
gi 7636021 214 VRFDGTPAELTARAA 228
Cdd:PRK11288 474 IAGELAREQATERQA 488
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
18-46 |
2.14e-05 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 44.41 E-value: 2.14e-05
10 20
....*....|....*....|....*....
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLL 46
Cdd:pfam13476 7 RSFRDQTIDFSKGLTLITGPNGSGKTTIL 35
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
129-169 |
2.62e-05 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 45.62 E-value: 2.62e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 7636021 129 EVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
20-212 |
3.01e-05 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 44.29 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLA--TAVPADRGAFTVLGHD-----PgssrgrqEVRRRLG------YLPQ 85
Cdd:COG0396 16 LKGVNLTIKPGeVHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDilelsP-------DERARAGiflafqYPVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 86 TPGFhpdfTAFEFVD--YVAILKELADRRERHREVRRVLEEVDLGE-VRGRRI-KKLSGGMRQRVALAAALVGDPGFLVL 161
Cdd:COG0396 89 IPGV----SVSNFLRtaLNARRGEELSAREFLKLLKEKMKELGLDEdFLDRYVnEGFSGGEKKRNEILQMLLLEPKLAIL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 162 DEPTVGLDPEqrmRFRELIAG----AGEGRTVLLSTHQTEdvaML----CHRVIVMAAG 212
Cdd:COG0396 165 DETDSGLDID---ALRIVAEGvnklRSPDRGILIITHYQR---ILdyikPDFVHVLVDG 217
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
137-214 |
3.11e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 45.17 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 137 KLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLL-STHQTEDVAMlCHRVIVMAAGAV 214
Cdd:NF040905 404 NLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINElAAEGKGVIViSSELPELLGM-CDRIYVMNEGRI 482
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
13-215 |
4.07e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 44.88 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 13 HYgrtrALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLA-TAVPadrgaftvlghdpgsSRGRQEVRRRLGYLPQTPGFH 90
Cdd:PRK13545 37 HY----ALNNISFEVPEGeIVGIIGLNGSGKSTLSNLIAgVTMP---------------NKGTVDIKGSAALIAISSGLN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTAFEFVDYVAILKELADRRERHREVRRvLEEVDLGEVRGRRIKKLSGGMRQRVALAAALVGDPGFLVLDEP-TVGLD 169
Cdd:PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEI-IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAlSVGDQ 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 170 P------EQRMRFREliagagEGRTVLLSTHQTEDVAMLCHRVIVMAAGAVR 215
Cdd:PRK13545 177 TftkkclDKMNEFKE------QGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
136-169 |
4.72e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.02 E-value: 4.72e-05
10 20 30
....*....|....*....|....*....|....
gi 7636021 136 KKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD 169
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
132-195 |
4.85e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 44.63 E-value: 4.85e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7636021 132 GRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG--AGEGRTVLLSTHQ 195
Cdd:PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNlkGNENRITIIIAHR 639
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
18-52 |
5.10e-05 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 43.83 E-value: 5.10e-05
10 20 30
....*....|....*....|....*....|....*..
gi 7636021 18 RALDDVSLRLT--PGVTGLLGPNGAGKTTLLRVLATA 52
Cdd:COG3950 12 RGFEDLEIDFDnpPRLTVLVGENGSGKTTLLEAIALA 48
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
122-220 |
5.59e-05 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 43.76 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 122 LEEVDLGEVR-GRRIKKLSGGMRQRVALAAALV-GDPG--FLVLDEPTVGLDPE--QRMR--FRELIAGageGRTVLLST 193
Cdd:cd03271 153 LCDVGLGYIKlGQPATTLSGGEAQRIKLAKELSkRSTGktLYILDEPTTGLHFHdvKKLLevLQRLVDK---GNTVVVIE 229
|
90 100 110
....*....|....*....|....*....|...
gi 7636021 194 HQTeDVAMLCHRVIVM------AAGAVRFDGTP 220
Cdd:cd03271 230 HNL-DVIKCADWIIDLgpeggdGGGQVVASGTP 261
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
135-214 |
6.29e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 43.95 E-value: 6.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 135 IKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTHQTEDVAMLCHRVIVMAAGA 213
Cdd:PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAElAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
.
gi 7636021 214 V 214
Cdd:PRK10982 469 V 469
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
18-50 |
1.22e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 43.00 E-value: 1.22e-04
10 20 30
....*....|....*....|....*....|...
gi 7636021 18 RALDDVSLRLTPgVTGLLGPNGAGKTTLLRVLA 50
Cdd:COG4637 11 KSLRDLELPLGP-LTVLIGANGSGKSNLLDALR 42
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
4-194 |
3.23e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 41.88 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 4 TVSASGLSLHYGRTR-ALDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAFTVLGhDPGSSRGRQEVRRRlg 81
Cdd:PRK10522 322 TLELRNVTFAYQDNGfSVGPINLTIKRGeLLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG-KPVTAEQPEDYRKL-- 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 82 ylpqtpgFHPDFTAFEFVDYV------AILKELADRRerhrevrrvLEEVDLG---EVRGRRIK--KLSGGMRQRVALAA 150
Cdd:PRK10522 399 -------FSAVFTDFHLFDQLlgpegkPANPALVEKW---------LERLKMAhklELEDGRISnlKLSKGQKKRLALLL 462
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 7636021 151 ALVGDPGFLVLDEPTVGLDPEQRMRF-RELIAGAGE-GRTVLLSTH 194
Cdd:PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFyQVLLPLLQEmGKTIFAISH 508
|
|
| RecF |
COG1195 |
Recombinational DNA repair ATPase RecF [Replication, recombination and repair]; |
18-46 |
5.11e-04 |
|
Recombinational DNA repair ATPase RecF [Replication, recombination and repair];
Pssm-ID: 440808 [Multi-domain] Cd Length: 352 Bit Score: 40.91 E-value: 5.11e-04
10 20
....*....|....*....|....*....
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLL 46
Cdd:COG1195 11 RNYESLELEFSPGINVLVGPNGQGKTNLL 39
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
20-197 |
5.40e-04 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 40.39 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 20 LDDVSLRLTPG-VTGLLGPNGAGKTTLLRVLATAVPADRGAF---TVLGHDPGSSRGRQEVRRRLGYLPQTPgFHPDFTA 95
Cdd:cd03290 17 LSNINIRIPTGqLTMIVGQVGCGKSSLLLAILGEMQTLEGKVhwsNKNESEPSFEATRSRNRYSVAYAAQKP-WLLNATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 96 FEFVDYVAIL-KELADRRERHREVRRVLEEVDLGEVR--GRRIKKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLD--- 169
Cdd:cd03290 96 EENITFGSPFnKQRYKAVTDACSLQPDIDLLPFGDQTeiGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDihl 175
|
170 180
....*....|....*....|....*...
gi 7636021 170 PEQRMRFRELIAGAGEGRTVLLSTHQTE 197
Cdd:cd03290 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQ 203
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
135-180 |
6.21e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 6.21e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 135 IKKLSGGMRQ------RVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELI 180
Cdd:PRK01156 799 IDSLSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII 850
|
|
| COG3910 |
COG3910 |
Predicted ATPase [General function prediction only]; |
18-194 |
8.03e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 40.13 E-value: 8.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDdvSLRLTPGVTGLLGPNGAGKTTLLRVLATAvpadrgaftvLGHDP-GSSRGRQEVRR----------RLGYLPQT 86
Cdd:COG3910 28 RNLE--GLEFHPPVTFFVGENGSGKSTLLEAIAVA----------AGFNPeGGSKNFRFSTResesalgeylRLSRGLPK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 87 P--GFHpdFTAFEFVDYVAILKELADRRERHrevrrvleevdLGEVRGRRIKKLSGG------MRQRvalaaalVGDPGF 158
Cdd:COG3910 96 PrdGFF--LRAESFFNVATYLDELAAEGPGI-----------LDSYGGRSLHEQSHGesflalFENR-------FRGNGL 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 7636021 159 LVLDEPTVGLDPEQRMRFRELIAG-AGEGRTVLLSTH 194
Cdd:COG3910 156 YLLDEPEAALSPSRQLALLALIHDlVREGSQFIIATH 192
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
11-47 |
1.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 1.16e-03
10 20 30
....*....|....*....|....*....|....*..
gi 7636021 11 SLHYGRTRALDDVSLRLTPGVTGLLGPNGAGKTTLLR 47
Cdd:COG4717 5 ELEIYGFGKFRDRTIEFSPGLNVIYGPNEAGKSTLLA 41
|
|
| recf |
TIGR00611 |
recF protein; All proteins in this family for which functions are known are DNA binding ... |
18-52 |
1.18e-03 |
|
recF protein; All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273173 [Multi-domain] Cd Length: 365 Bit Score: 40.03 E-value: 1.18e-03
10 20 30
....*....|....*....|....*....|....*
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLLRVLATA 52
Cdd:TIGR00611 12 RNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYL 46
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
18-194 |
1.45e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 39.57 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 18 RALDDVSLRLTPgVTGLLGPNGAGKTTLLRVLATA-------VPADRGAFtvlghdpgssrgrQEVRRRLGYLPQTPGFH 90
Cdd:COG4938 10 GPFKEAELELKP-LTLLIGPNGSGKSTLIQALLLLlqsnfiyLPAERSGP-------------ARLYPSLVRELSDLGSR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 91 PDFTafefVDYVAILKELADRRERHREV----RRVLEEVDLGEVR-------GRRIKKLSG------------GMRQ--R 145
Cdd:COG4938 76 GEYT----ADFLAELENLEILDDKSKELleqvEEWLEKIFPGKVEvdassdlVRLVFRPSGngkriplsnvgsGVSEllP 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7636021 146 VALAAALVGDPGFLVL-DEPTVGLDPE-QRmRFRELIAG-AGEGRTVLLSTH 194
Cdd:COG4938 152 ILLALLSAAKPGSLLIiEEPEAHLHPKaQS-ALAELLAElANSGVQVIIETH 202
|
|
| recF |
PRK00064 |
recombination protein F; Reviewed |
18-46 |
1.54e-03 |
|
recombination protein F; Reviewed
Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 39.76 E-value: 1.54e-03
10 20
....*....|....*....|....*....
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLL 46
Cdd:PRK00064 12 RNYEELDLELSPGVNVLVGENGQGKTNLL 40
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
138-223 |
1.57e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 40.01 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 138 LSGGMRQRVALA----AALVGdpgFL-VLDEPTVGLdpEQR---------MRFRELiagageGRTVLLSTHQtEDVAMLC 203
Cdd:COG0178 486 LSGGEAQRIRLAtqigSGLVG---VLyVLDEPSIGL--HQRdndrlietlKRLRDL------GNTVIVVEHD-EDTIRAA 553
|
90 100
....*....|....*....|....*.
gi 7636021 204 HRVIVMAAGA------VRFDGTPAEL 223
Cdd:COG0178 554 DYIIDIGPGAgehggeVVAQGTPEEI 579
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
122-168 |
1.70e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.00 E-value: 1.70e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 7636021 122 LEEVDLGEVR-GRRIKKLSGGMRQRVALAAAL---VGDPGFLVLDEPTVGL 168
Cdd:TIGR00630 813 LCDVGLGYIRlGQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGL 863
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
133-180 |
1.78e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 1.78e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 7636021 133 RRIKKLSGGMRQ------RVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELI 180
Cdd:PRK03918 784 RPLTFLSGGERIalglafRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM 837
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
138-194 |
2.03e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 39.14 E-value: 2.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 7636021 138 LSGGMRQRVALAAALV--GDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTH 194
Cdd:COG4637 259 LSDGTLRFLALLAALLspRPPPLLCIEEPENGLHPDLLPALAELLREASERTQVIVTTH 317
|
|
| ABC_RecF |
cd03242 |
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that ... |
18-46 |
2.62e-03 |
|
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213209 [Multi-domain] Cd Length: 270 Bit Score: 38.43 E-value: 2.62e-03
10 20
....*....|....*....|....*....
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLL 46
Cdd:cd03242 10 RNYAELELEFEPGVTVLVGENAQGKTNLL 38
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
36-91 |
3.70e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 38.59 E-value: 3.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7636021 36 GPNGAGKTTLLRVLATAV---------PA---------DRGAFT-VLGHDPGSSRGRQEVRRrlgyLPQTPGFHP 91
Cdd:PRK14962 43 GPRGTGKTTVARILAKSLncenrkgvePCnecracrsiDEGTFMdVIELDAASNRGIDEIRK----IRDAVGYRP 113
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
31-50 |
4.15e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 38.14 E-value: 4.15e-03
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
14-191 |
4.19e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.10 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 14 YGRTRALDDVSLRLTPGVTG------LLGPNGAGKTTLLRVLATAVPADRGAFTvlghdpgssrgrqevrrrLGYLPQTP 87
Cdd:pfam13191 3 VGREEELEQLLDALDRVRSGrppsvlLTGEAGTGKTTLLRELLRALERDGGYFL------------------RGKCDENL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 88 GFHPDFTAFEFVDYVAILKELADRRERHREVRRVLEEV-DLGEVRGRRIKKLSGGMRQRVALAAALvGDPGFLVLDEPTV 166
Cdd:pfam13191 65 PYSPLLEALTREGLLRQLLDELESSLLEAWRAALLEALaPVPELPGDLAERLLDLLLRLLDLLARG-ERPLVLVLDDLQW 143
|
170 180
....*....|....*....|....*
gi 7636021 167 gLDPEQRMRFRELIAGAGEGRTVLL 191
Cdd:pfam13191 144 -ADEASLQLLAALLRLLESLPLLVV 167
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
132-204 |
5.51e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 38.27 E-value: 5.51e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7636021 132 GRRIKKLSGGMRQRVALAAAL---VGDPGFLVLDEPTVGLDPEQrmrFRELIagagegrTVLLS-THQTEDVAMLCH 204
Cdd:PRK00635 804 GRPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHD---IKALI-------YVLQSlTHQGHTVVIIEH 870
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
138-168 |
5.82e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 38.08 E-value: 5.82e-03
10 20 30
....*....|....*....|....*....|....
gi 7636021 138 LSGGMRQRVALAAALV-GDPG--FLVLDEPTVGL 168
Cdd:COG0178 827 LSGGEAQRVKLASELSkRSTGktLYILDEPTTGL 860
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
18-49 |
6.22e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 37.96 E-value: 6.22e-03
10 20 30
....*....|....*....|....*....|..
gi 7636021 18 RALDDVSLRLTPGVTGLLGPNGAGKTTLLRVL 49
Cdd:pfam13175 12 RCLKDTEIDLDEDLTVLIGKNNSGKSSILEAL 43
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
21-60 |
6.32e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 34.50 E-value: 6.32e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 7636021 21 DDVSLRLTP-GVTGLLGPNGAGKTTLLRVLATA-VPADRGAF 60
Cdd:pfam13555 13 DGHTIPIDPrGNTLLTGPSGSGKSTLLDAIQTLlVPAKRARF 54
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
33-169 |
8.02e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 37.56 E-value: 8.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 33 GLLGPNGAGKTTLLRVLATAVPADRGAFTVlghDPGSsrgrqevrrRLGYLPQtpgfhpDFTAFE---FVDYV------- 102
Cdd:PRK15064 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSL---DPNE---------RLGKLRQ------DQFAFEeftVLDTVimghtel 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 103 -AILKE------LADRRERHREVRRVLE----EVD--LGEVR--------GRRIKKLSGGMRQ-------RVALAAALVG 154
Cdd:PRK15064 93 wEVKQErdriyaLPEMSEEDGMKVADLEvkfaEMDgyTAEARagelllgvGIPEEQHYGLMSEvapgwklRVLLAQALFS 172
|
170
....*....|....*
gi 7636021 155 DPGFLVLDEPTVGLD 169
Cdd:PRK15064 173 NPDILLLDEPTNNLD 187
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
136-229 |
8.43e-03 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 37.20 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7636021 136 KKLSGGMRQRVALAAALVGDPGFLVLDEPTVGLDPEQRMRFRELIAGAGEGRTVLLSTHQTEDVaMLCHRVIVMAAGAVR 215
Cdd:cd03288 155 ENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTI-LDADLVLVLSRGILV 233
|
90
....*....|....
gi 7636021 216 FDGTPAELTARAAG 229
Cdd:cd03288 234 ECDTPENLLAQEDG 247
|
|
| |
