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Conserved domains on  [gi|1855671430|emb|CAC6972181|]
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Uncharacterized conserved protein [Staphylococcus aureus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 237-536 1.92e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.56  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 237 RYAIIKQEIEQLENE---------RIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHALTNELHVENGTVANL 307
Cdd:COG1196   214 RYRELKEELKELEAEllllklrelEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 308 KTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKfEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNAGKSKELE 387
Cdd:COG1196   294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 388 TIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARIQNKINKLKtthvdvtqtDEYKAVMLEINEINQKRSN 467
Cdd:COG1196   373 ELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELEEEEEE 439

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1855671430 468 IRKTIQDNVSGIDDKISELTQEKSEI----EVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 536
Cdd:COG1196   440 EEEALEEAAEEEAELEEEEEALLELLaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 237-536 1.92e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.56  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 237 RYAIIKQEIEQLENE---------RIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHALTNELHVENGTVANL 307
Cdd:COG1196   214 RYRELKEELKELEAEllllklrelEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 308 KTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKfEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNAGKSKELE 387
Cdd:COG1196   294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 388 TIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARIQNKINKLKtthvdvtqtDEYKAVMLEINEINQKRSN 467
Cdd:COG1196   373 ELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELEEEEEE 439

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1855671430 468 IRKTIQDNVSGIDDKISELTQEKSEI----EVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 536
Cdd:COG1196   440 EEEALEEAAEEEAELEEEEEALLELLaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 183-519 2.14e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 2.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  183 FKELNNILGDHE---IETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVpefdNDRYAIIKQEIEQLeNERIDIQNGK 259
Cdd:TIGR02169  213 YQALLKEKREYEgyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISEL----EKRLEEIEQLLEEL-NKKIKDLGEE 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  260 EEINLRNQLADKQSELKRIEDNNSASNEnkihaltnelhvengtvanlktRLKQNKQQITHEENRRNQLLENHKGLKSDL 339
Cdd:TIGR02169  288 EQLRVKEKIGELEAEIASLERSIAEKER----------------------ELEDAEERLAKLEAEIDKLLAEIEELEREI 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  340 EKAKNQKfeylddnvcsccgqqlpaEQVNEAREKALQKFNAgKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQI 419
Cdd:TIGR02169  346 EEERKRR------------------DKLTEEYAELKEELED-LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  420 ----KINEAEERSARIQNKINKLKTTHVDVTQTD-EYKAVMLEINEINQKrsniRKTIQDNVSGIDDKISELTQEKSEIE 494
Cdd:TIGR02169  407 eldrLQEELQRLSEELADLNAAIAGIEAKINELEeEKEDKALEIKKQEWK----LEQLAADLSKYEQELYDLKEEYDRVE 482

                          330       340
                   ....*....|....*....|....*
gi 1855671430  495 vsRSIEKSNKHLDDVISELRNEEDR 519
Cdd:TIGR02169  483 --KELSKLQRELAEAEAQARASEER 505
PRK01156 PRK01156
chromosome segregation protein; Provisional
 83-520 3.00e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 47.20  E-value: 3.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  83 EIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDY--KARIDELIDEDVFKLITNPQafNLLDWKKR 160
Cdd:PRK01156  260 TAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIenKKQILSNIDAEINKYHAIIK--KLSVLQKD 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 161 RSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKiltdKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRYAI 240
Cdd:PRK01156  338 YNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK----KIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 241 IKQEIEQLE------NERIDIQNGKEEINLRN---------------QLADKQSELKRIEDNNSASN-ENKIHALTNELH 298
Cdd:PRK01156  414 INVKLQDISskvsslNQRIRALRENLDELSRNmemlngqsvcpvcgtTLGEEKSNHIINHYNEKKSRlEEKIREIEIEVK 493

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 299 VENGTVANLKTRLKQ-NKQQITHEENRRNQLLENHKGLKSDLE-----KAKNQKFEYLDDNVCSCCGQQLPAE------- 365
Cdd:PRK01156  494 DIDEKIVDLKKRKEYlESEEINKSINEYNKIESARADLEDIKIkinelKDKHDKYEEIKNRYKSLKLEDLDSKrtswlna 573

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 366 --QVNEAREKALQKFNAGKSKELETIQTSINHIISEGKKIKPIIE----KLEDDNNNLQIKINEAEERSA---RIQNKIN 436
Cdd:PRK01156  574 laVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDksirEIENEANNLNNKYNEIQENKIlieKLRGKID 653

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 437 KLKtthvdvTQTDEYKAVMLEINEINQKRSNIRKTIQDNVSGIDDKISELTQEKSEIEVSRSiekSNKHLDDVISELRNE 516
Cdd:PRK01156  654 NYK------KQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT---RINELSDRINDINET 724


                  ....
gi 1855671430 517 EDRL 520
Cdd:PRK01156  725 LESM 728
DUF3568 pfam12092
Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. ...
 365-437 6.44e-04

Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.


Pssm-ID: 403350  Cd Length: 124  Bit Score: 39.99  E-value: 6.44e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1855671430 365 EQVNEAREKALQKFN-AGKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEA--EERSARIQNKINK 437
Cdd:pfam12092  48 RSVYNATLAAIQDLNlSLVEKSKDGSSATITGKDAGDKTVFIRLEKLDDNSTKVSIRVGYFgdEQASRRLLDAIQK 123
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 237-536 1.92e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.56  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 237 RYAIIKQEIEQLENE---------RIDIQNGKEEINLRNQLADKQSELKRIEDNNSASNENKIHALTNELHVENGTVANL 307
Cdd:COG1196   214 RYRELKEELKELEAEllllklrelEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 308 KTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKfEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNAGKSKELE 387
Cdd:COG1196   294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 388 TIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARIQNKINKLKtthvdvtqtDEYKAVMLEINEINQKRSN 467
Cdd:COG1196   373 ELAEAEEELEELAEE----LLEALRAAAELAAQLEELEEAEEALLERLERLE---------EELEELEEALAELEEEEEE 439

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1855671430 468 IRKTIQDNVSGIDDKISELTQEKSEI----EVSRSIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 536
Cdd:COG1196   440 EEEALEEAAEEEAELEEEEEALLELLaellEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 183-519 2.14e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 51.22  E-value: 2.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  183 FKELNNILGDHE---IETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVpefdNDRYAIIKQEIEQLeNERIDIQNGK 259
Cdd:TIGR02169  213 YQALLKEKREYEgyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISEL----EKRLEEIEQLLEEL-NKKIKDLGEE 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  260 EEINLRNQLADKQSELKRIEDNNSASNEnkihaltnelhvengtvanlktRLKQNKQQITHEENRRNQLLENHKGLKSDL 339
Cdd:TIGR02169  288 EQLRVKEKIGELEAEIASLERSIAEKER----------------------ELEDAEERLAKLEAEIDKLLAEIEELEREI 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  340 EKAKNQKfeylddnvcsccgqqlpaEQVNEAREKALQKFNAgKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQI 419
Cdd:TIGR02169  346 EEERKRR------------------DKLTEEYAELKEELED-LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  420 ----KINEAEERSARIQNKINKLKTTHVDVTQTD-EYKAVMLEINEINQKrsniRKTIQDNVSGIDDKISELTQEKSEIE 494
Cdd:TIGR02169  407 eldrLQEELQRLSEELADLNAAIAGIEAKINELEeEKEDKALEIKKQEWK----LEQLAADLSKYEQELYDLKEEYDRVE 482

                          330       340
                   ....*....|....*....|....*
gi 1855671430  495 vsRSIEKSNKHLDDVISELRNEEDR 519
Cdd:TIGR02169  483 --KELSKLQRELAEAEAQARASEER 505
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 244-520 4.34e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.07  E-value: 4.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  244 EIEQLENERIDIQNGKEEI-NLRNQLADKQSELKR-IEDNnsasnENKIHALTNELHVENGTVANLKTRLKQNKQQITHE 321
Cdd:TIGR02169  682 RLEGLKRELSSLQSELRRIeNRLDELSQELSDASRkIGEI-----EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  322 EnrrnQLLENHKGLKSDLEKAKNQKFEYLDDNVCSCCGQQLPaEQVNEAREKalqkfnagkSKELETIQTSINHIISEGK 401
Cdd:TIGR02169  757 K----SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP-EIQAELSKL---------EEEVSRIEARLREIEQKLN 822

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  402 KIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQtdEYKAVMLEINEINQKRSNIRKTIQDnvsgIDD 481
Cdd:TIGR02169  823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE--ELEELEAALRDLESRLGDLKKERDE----LEA 896

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1855671430  482 KISELTQEKSEIEVsrSIEKSNKHLDDVISELRNEEDRL 520
Cdd:TIGR02169  897 QLRELERKIEELEA--QIEKKRKRLSELKAKLEALEEEL 933
PRK01156 PRK01156
chromosome segregation protein; Provisional
 83-520 3.00e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 47.20  E-value: 3.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  83 EIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDY--KARIDELIDEDVFKLITNPQafNLLDWKKR 160
Cdd:PRK01156  260 TAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIenKKQILSNIDAEINKYHAIIK--KLSVLQKD 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 161 RSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKiltdKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRYAI 240
Cdd:PRK01156  338 YNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK----KIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 241 IKQEIEQLE------NERIDIQNGKEEINLRN---------------QLADKQSELKRIEDNNSASN-ENKIHALTNELH 298
Cdd:PRK01156  414 INVKLQDISskvsslNQRIRALRENLDELSRNmemlngqsvcpvcgtTLGEEKSNHIINHYNEKKSRlEEKIREIEIEVK 493

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 299 VENGTVANLKTRLKQ-NKQQITHEENRRNQLLENHKGLKSDLE-----KAKNQKFEYLDDNVCSCCGQQLPAE------- 365
Cdd:PRK01156  494 DIDEKIVDLKKRKEYlESEEINKSINEYNKIESARADLEDIKIkinelKDKHDKYEEIKNRYKSLKLEDLDSKrtswlna 573

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 366 --QVNEAREKALQKFNAGKSKELETIQTSINHIISEGKKIKPIIE----KLEDDNNNLQIKINEAEERSA---RIQNKIN 436
Cdd:PRK01156  574 laVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDksirEIENEANNLNNKYNEIQENKIlieKLRGKID 653

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 437 KLKtthvdvTQTDEYKAVMLEINEINQKRSNIRKTIQDNVSGIDDKISELTQEKSEIEVSRSiekSNKHLDDVISELRNE 516
Cdd:PRK01156  654 NYK------KQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT---RINELSDRINDINET 724


                  ....
gi 1855671430 517 EDRL 520
Cdd:PRK01156  725 LESM 728
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 384-527 4.63e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 45.30  E-value: 4.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 384 KELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTThvdvtqtDEYKAVMLEINEINQ 463
Cdd:COG1579    31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN-------KEYEALQKEIESLKR 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1855671430 464 KRSNIRKTIQDNVSGIDDKISELTQEKSEIE-VSRSIEKSNKHLDDVISELRNEEDRLLDEKEKY 527
Cdd:COG1579   104 RISDLEDEILELMERIEELEEELAELEAELAeLEAELEEKKAELDEELAELEAELEELEAEREEL 168
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 243-494 5.40e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 5.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 243 QEIEQLENERIDIQNGKEEinLRNQLADKQSELKRIEDNNSASnENKIHALTNELHVENGTVANLKTRLKQNKQQITHEE 322
Cdd:COG4942    20 DAAAEAEAELEQLQQEIAE--LEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 323 NRRNQllenhkglksdlekaknQKFEYlddnvcsccGQQLPAEQVNEAREKALQKFNAGKSKELETIQTSINHIISEGKK 402
Cdd:COG4942    97 AELEA-----------------QKEEL---------AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 403 ikpIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQTDEYKAVMLeiNEINQKRSNIRKTI---QDNVSGI 479
Cdd:COG4942   151 ---QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLL--ARLEKELAELAAELaelQQEAEEL 225

                         250
                  ....*....|....*
gi 1855671430 480 DDKISELTQEKSEIE 494
Cdd:COG4942   226 EALIARLEAEAAAAA 240
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 193-513 6.12e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 6.12e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  193 HEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRYAIIKQEIEQLENERIDIQNGKEEIN-LRNQLADK 271
Cdd:TIGR02168  729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKaLREALDEL 808

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  272 QSELKRIEDNnSASNENKIHALTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLD 351
Cdd:TIGR02168  809 RAELTLLNEE-AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  352 DNVCSCCGQQLPAEQVNEAREKALQKFNagKSKELETIQTSINHIISEGK-KIKPIIEKL-EDDNNNLQI---------- 419
Cdd:TIGR02168  888 ALALLRSELEELSEELRELESKRSELRR--ELEELREKLAQLELRLEGLEvRIDNLQERLsEEYSLTLEEaealenkied 965

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  420 KINEAEERSARIQNKINKLKTthVDVTQTDEYKAVMLEINEINQKRSNI---RKTIQDNVSGIDDKISELTQEkseievs 496
Cdd:TIGR02168  966 DEEEARRRLKRLENKIKELGP--VNLAAIEEYEELKERYDFLTAQKEDLteaKETLEEAIEEIDREARERFKD------- 1036

                          330
                   ....*....|....*..
gi 1855671430  497 rSIEKSNKHLDDVISEL 513
Cdd:TIGR02168 1037 -TFDQVNENFQRVFPKL 1052
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
233-509 9.44e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 9.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  233 FDNDRY-AIIKQEIEQLENERIDIQNGKEEIN-LRNQLADKQSELKRI-----EDNNSASNENKIHALTNELH---VENG 302
Cdd:COG4913    606 FDNRAKlAALEAELAELEEELAEAEERLEALEaELDALQERREALQRLaeyswDEIDVASAEREIAELEAELErldASSD 685

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  303 TVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNvcsccgQQLPAEQVNEAREKALQKFNAGK 382
Cdd:COG4913    686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL------EAAEDLARLELRALLEERFAAAL 759

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  383 SKELEtiqtsinhiisegkkiKPIIEKLEDDNNNLQIKINEAEERSARIQNKINK---LKTTHVDVT--QTDEYKAVM-- 455
Cdd:COG4913    760 GDAVE----------------RELRENLEERIDALRARLNRAEEELERAMRAFNRewpAETADLDADleSLPEYLALLdr 823

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1855671430  456 LEINEINQKRSNIRKTIQDNVSG-IDDKISELTQEKSEIEvsRSIEKSNKHLDDV 509
Cdd:COG4913    824 LEEDGLPEYEERFKELLNENSIEfVADLLSKLRRAIREIK--ERIDPLNDSLKRI 876
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
 396-571 6.23e-04

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 42.99  E-value: 6.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 396 IISEGKKIKPIIEKL--------EDDNNNLQI-KINEAEERSARIQNKINKLKTtHVDVTQTDEY---KAVMLEINEINQ 463
Cdd:PRK05771   11 IVTLKSYKDEVLEALhelgvvhiEDLKEELSNeRLRKLRSLLTKLSEALDKLRS-YLPKLNPLREekkKVSVKSLEELIK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 464 KRSNIRKTIQDNVSGIDDKISELTQEKSEIEVSRSIEKSNKHLDDVISELRNEE---------DRLLDEKEKYSHDLYIL 534
Cdd:PRK05771   90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKyvsvfvgtvPEDKLEELKLESDVENV 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1855671430 535 KEFTTTK---------VKMLTENINNEFEIAEFKLFNTLVNGELEE 571
Cdd:PRK05771  170 EYISTDKgyvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTPSE 215
DUF3568 pfam12092
Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. ...
 365-437 6.44e-04

Protein of unknown function (DUF3568); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.


Pssm-ID: 403350  Cd Length: 124  Bit Score: 39.99  E-value: 6.44e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1855671430 365 EQVNEAREKALQKFN-AGKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEA--EERSARIQNKINK 437
Cdd:pfam12092  48 RSVYNATLAAIQDLNlSLVEKSKDGSSATITGKDAGDKTVFIRLEKLDDNSTKVSIRVGYFgdEQASRRLLDAIQK 123
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 239-528 1.03e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.36  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  239 AIIKQEIEQLENERI------DIQNGKEEINLRNQLADKQSELKRIE--DNNSASNENKIHALTNELHVENGTVANLKTR 310
Cdd:TIGR02169  194 DEKRQQLERLRREREkaeryqALLKEKREYEGYELLKEKEALERQKEaiERQLASLEEELEKLTEEISELEKRLEEIEQL 273

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  311 LKQNKQQITHE-ENRRNQLLENHKGLKSDLEKAKNQKFEYLDDnvcsccgqqlpAEQVNEAREKALQKFNAGKSkELETI 389
Cdd:TIGR02169  274 LEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERE-----------LEDAEERLAKLEAEIDKLLA-EIEEL 341

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  390 QTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVT-QTDEYKAVMLEINEINQKRSNI 468
Cdd:TIGR02169  342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKrEINELKRELDRLQEELQRLSEE 421

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430  469 RKTIQDNVSGIDDKISELTQEKSEIEvsRSIEKSNKHLDDVISELRNEEDRLLDEKEKYS 528
Cdd:TIGR02169  422 LADLNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 194-372 1.19e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.06  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 194 EIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVpeFDNDRYAIIKQEIEQLENERIDIQngKEEINLRNQLADKQS 273
Cdd:COG1579    49 AAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV--RNNKEYEALQKEIESLKRRISDLE--DEILELMERIEELEE 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 274 ELKRIEDnnsasnenKIHALTNELHVEngtVANLKTRLKQNKQQITHEENRRNQLLenhKGLKSDL----EKAKNQK--- 346
Cdd:COG1579   125 ELAELEA--------ELAELEAELEEK---KAELDEELAELEAELEELEAEREELA---AKIPPELlalyERIRKRKngl 190

                         170       180
                  ....*....|....*....|....*..
gi 1855671430 347 -FEYLDDNVCSCCGQQLPAEQVNEARE 372
Cdd:COG1579   191 aVVPVEGGACGGCFMELPPQELNEIRA 217
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
182-345 1.56e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 182 DFKELNNILgdhEIETKKKILTDKIKQINKDIKDIPIRINQTQ-----------QNKQDVPE-FDNDRYAIIKQEIEQLE 249
Cdd:COG3206   200 EFRQKNGLV---DLSEEAKLLLQQLSELESQLAEARAELAEAEarlaalraqlgSGPDALPElLQSPVIQQLRAQLAELE 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 250 NERIDI-QNGKEE----INLRNQLADKQSELKRIEDNNSASNENKIHALTNElhvengtVANLKTRLKQNKQQITHEENR 324
Cdd:COG3206   277 AELAELsARYTPNhpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAR-------EASLQAQLAQLEARLAELPEL 349

                         170       180
                  ....*....|....*....|.
gi 1855671430 325 RNQLLEnhkgLKSDLEKAKNQ 345
Cdd:COG3206   350 EAELRR----LEREVEVAREL 366
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
174-536 1.76e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.59  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 174 EDVIKTNDDFKELnnilgdheIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDNdryaiIKQEIEQLENERI 253
Cdd:PRK03918  182 EKFIKRTENIEEL--------IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-----LKEEIEELEKELE 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 254 DIQNGKEEI-----NLRNQLADKQSELKRIEDNNSASNENKIHALTNElhvengTVANLKTRLKQNKQQITHEENRRNQL 328
Cdd:PRK03918  249 SLEGSKRKLeekirELEERIEELKKEIEELEEKVKELKELKEKAEEYI------KLSEFYEEYLDELREIEKRLSRLEEE 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 329 LENHKGLKSDLEKaKNQKFEYLDDNVCSCCGQQLPAEQVNEAREKALQKFNAGKSKELETIQTSINHIISEGKKIKPIIE 408
Cdd:PRK03918  323 INGIEERIKELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE 401

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 409 KLEDDNNNLQIKINEAEERSARIQNKINKLKTTHVDVTQ-----TDEYKAVMLEinEINQKRSNIRKTIQDnvsgIDDKI 483
Cdd:PRK03918  402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrelTEEHRKELLE--EYTAELKRIEKELKE----IEEKE 475

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1855671430 484 SELTQEKSEIEVSRSIEKSNKHLDDVISELRNEEDRL----LDEKEKYSHDLYILKE 536
Cdd:PRK03918  476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLkkynLEELEKKAEEYEKLKE 532
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 355-536 3.01e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 355 CSCCGQQLPAEQVNEAREKALQKFNAgKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNK 434
Cdd:COG4942    13 LAAAAQADAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 435 INKLKTTHvdVTQTDEYKAVMLE----------------------------INEINQKRSNIRKTIQDNVSGIDDKISEL 486
Cdd:COG4942    92 IAELRAEL--EAQKEELAELLRAlyrlgrqpplalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAEL 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1855671430 487 TQEKSEIEVSRS-IEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKE 536
Cdd:COG4942   170 EAERAELEALLAeLEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 184-434 3.75e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.13  E-value: 3.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 184 KELNNIlgDHEIETKKKILTD---KIKQINKDIKDIPIRINQTQQNKQDVpefdNDRYAIIKQEIEQLEneridiqngKE 260
Cdd:COG4942    27 AELEQL--QQEIAELEKELAAlkkEEKALLKQLAALERRIAALARRIRAL----EQELAALEAELAELE---------KE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 261 EINLRNQLADKQSELKRIedNNSASNENKIHALTNELHVENGT-----VANLKTRLKQNKQQITHEENRRNQLLEnhkgL 335
Cdd:COG4942    92 IAELRAELEAQKEELAEL--LRALYRLGRQPPLALLLSPEDFLdavrrLQYLKYLAPARREQAEELRADLAELAA----L 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 336 KSDLEKAKNQKfeylddnvcsccgQQLPAEQvnEAREKALQKFNAGKSKELETIQTSInhiisegKKIKPIIEKLEDDNN 415
Cdd:COG4942   166 RAELEAERAEL-------------EALLAEL--EEERAALEALKAERQKLLARLEKEL-------AELAAELAELQQEAE 223

                         250
                  ....*....|....*....
gi 1855671430 416 NLQIKINEAEERSARIQNK 434
Cdd:COG4942   224 ELEALIARLEAEAAAAAER 242
46 PHA02562
endonuclease subunit; Provisional
 312-534 6.26e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 39.61  E-value: 6.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 312 KQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNvcsccgqqlpaeqvnEAREKALQKFNAGKSK---ELET 388
Cdd:PHA02562  209 KKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI---------------EDPSAALNKLNTAAAKiksKIEQ 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 389 IQtSINHIISEGKKIKPIIEKLEDDNNnlqiKINEAEERSARIQNKINKLKTTHVDVTQ-TDEYKAVMLEINEINQKRSN 467
Cdd:PHA02562  274 FQ-KVIKMYEKGGVCPTCTQQISEGPD----RITKIKDKLKELQHSLEKLDTAIDELEEiMDEFNEQSKKLLELKNKIST 348

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1855671430 468 IRKTIqdnvSGIDDKISELTQEKSEIEVSRSIEKSNkhlddvISELRNEEDRLLDEKEKYSHDLYIL 534
Cdd:PHA02562  349 NKQSL----ITLVDKAKKVKAAIEELQAEFVDNAEE------LAKLQDELDKIVKTKSELVKEKYHR 405
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 192-433 7.45e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.53  E-value: 7.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 192 DHEIETKKKILTDKIKQINKDIKDIpIRINQTQQNKQdvpefdnDRYAIIKQEIEQLENERIDIQngKEEINLRNQLADK 271
Cdd:COG1196   280 ELELEEAQAEEYELLAELARLEQDI-ARLEERRRELE-------ERLEELEEELAELEEELEELE--EELEELEEELEEA 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 272 QSELKRIEDNNSASNEnKIHALTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLD 351
Cdd:COG1196   350 EEELEEAEAELAEAEE-ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1855671430 352 dnvcsccgQQLPAEQVNEAREKALQKFNAGKSKELETIQTSINHIISEGKKikpiIEKLEDDNNNLQIKINEAEERSARI 431
Cdd:COG1196   429 --------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE----AALLEAALAELLEELAEAAARLLLL 496


                  ..
gi 1855671430 432 QN 433
Cdd:COG1196   497 LE 498
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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