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Conserved domains on  [gi|1901003314|emb|CAD5312126|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 53-531 1.01e-17

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 87.24  E-value: 1.01e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314   53 LLSSVCIDNVNDHAERSSEFHHygvgtNLRARVKPMKQFGLSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMAR 132
Cdd:PLN03218   324 SLSLDKKNNGVKDAELPGQSSG-----QAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  133 hnqvphfpscsnlvRGLARIDQLDKAMcILRVMVMSGGVPDTI------------TYNMIIGNLCKKGHIRTALVLLEDM 200
Cdd:PLN03218   399 --------------RGLLDMDKIYHAK-FFKACKKQRAVKEAFrfaklirnptlsTFNMLMSVCASSQDIDGALRVLRLV 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  201 SLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVElvcrycGSARAIEVLEDMAVEGCY---- 276
Cdd:PLN03218   464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID------GCARAGQVAKAFGAYGIMrskn 537

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  277 --PDIVTYNSLVNYNCRRGNLEEVASVIQHIL--SHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITY 352
Cdd:PLN03218   538 vkPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  353 NILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKK 432
Cdd:PLN03218   618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  433 GLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRG---NGIrgsTYRLVIQGLCKKKEIEMAI 509
Cdd:PLN03218   698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGlcpNTI---TYSILLVASERKDDADVGL 774

                          490       500
                   ....*....|....*....|..
gi 1901003314  510 EVVEIMLTGGCKPDETIYTAIV 531
Cdd:PLN03218   775 DLLSQAKEDGIKPNLVMCRCIT 796
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 53-531 1.01e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 87.24  E-value: 1.01e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314   53 LLSSVCIDNVNDHAERSSEFHHygvgtNLRARVKPMKQFGLSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMAR 132
Cdd:PLN03218   324 SLSLDKKNNGVKDAELPGQSSG-----QAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  133 hnqvphfpscsnlvRGLARIDQLDKAMcILRVMVMSGGVPDTI------------TYNMIIGNLCKKGHIRTALVLLEDM 200
Cdd:PLN03218   399 --------------RGLLDMDKIYHAK-FFKACKKQRAVKEAFrfaklirnptlsTFNMLMSVCASSQDIDGALRVLRLV 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  201 SLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVElvcrycGSARAIEVLEDMAVEGCY---- 276
Cdd:PLN03218   464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID------GCARAGQVAKAFGAYGIMrskn 537

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  277 --PDIVTYNSLVNYNCRRGNLEEVASVIQHIL--SHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITY 352
Cdd:PLN03218   538 vkPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  353 NILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKK 432
Cdd:PLN03218   618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  433 GLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRG---NGIrgsTYRLVIQGLCKKKEIEMAI 509
Cdd:PLN03218   698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGlcpNTI---TYSILLVASERKDDADVGL 774

                          490       500
                   ....*....|....*....|..
gi 1901003314  510 EVVEIMLTGGCKPDETIYTAIV 531
Cdd:PLN03218   775 DLLSQAKEDGIKPNLVMCRCIT 796
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 417-466 1.15e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 1.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1901003314 417 PGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCR 466
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 420-454 1.25e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.84  E-value: 1.25e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1901003314 420 ITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDD 454
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 53-531 1.01e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 87.24  E-value: 1.01e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314   53 LLSSVCIDNVNDHAERSSEFHHygvgtNLRARVKPMKQFGLSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMAR 132
Cdd:PLN03218   324 SLSLDKKNNGVKDAELPGQSSG-----QAASDVEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK 398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  133 hnqvphfpscsnlvRGLARIDQLDKAMcILRVMVMSGGVPDTI------------TYNMIIGNLCKKGHIRTALVLLEDM 200
Cdd:PLN03218   399 --------------RGLLDMDKIYHAK-FFKACKKQRAVKEAFrfaklirnptlsTFNMLMSVCASSQDIDGALRVLRLV 463

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  201 SLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVElvcrycGSARAIEVLEDMAVEGCY---- 276
Cdd:PLN03218   464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID------GCARAGQVAKAFGAYGIMrskn 537

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  277 --PDIVTYNSLVNYNCRRGNLEEVASVIQHIL--SHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITY 352
Cdd:PLN03218   538 vkPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  353 NILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKK 432
Cdd:PLN03218   618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  433 GLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRG---NGIrgsTYRLVIQGLCKKKEIEMAI 509
Cdd:PLN03218   698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGlcpNTI---TYSILLVASERKDDADVGL 774

                          490       500
                   ....*....|....*....|..
gi 1901003314  510 EVVEIMLTGGCKPDETIYTAIV 531
Cdd:PLN03218   775 DLLSQAKEDGIKPNLVMCRCIT 796
PLN03077 PLN03077
Protein ECB2; Provisional
 79-473 1.03e-17

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 86.83  E-value: 1.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  79 TNLRARVKPMkqfGLSSDGPITENDEETNNEiLHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVR----------G 148
Cdd:PLN03077   30 WNFHGRKRSR---GLSVAASSSSSTHDSNSQ-LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRlcewkraveeG 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 149 LARIDQLDKAM---------CILRVMVMSGGV------------PDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPP 207
Cdd:PLN03077  106 SRVCSRALSSHpslgvrlgnAMLSMFVRFGELvhawyvfgkmpeRDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 208 DVITYNTVIR-C--MFDYGNAEQA----IRFwkdqlqngcpPFMITYTVLVELVCRY--CGSARAIEVLED-MAVEgcyp 277
Cdd:PLN03077  186 DVYTFPCVLRtCggIPDLARGREVhahvVRF----------GFELDVDVVNALITMYvkCGDVVSARLVFDrMPRR---- 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 278 DIVTYNSLV-----NYNCRRG--------------NLEEVASVIQ----------------HILSHGLELNTVTYNTLLH 322
Cdd:PLN03077  252 DCISWNAMIsgyfeNGECLEGlelfftmrelsvdpDLMTITSVISacellgderlgremhgYVVKTGFAVDVSVCNSLIQ 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 323 SLCSHEYWDEVEEILNIMYqtsyCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDD 402
Cdd:PLN03077  332 MYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901003314 403 AIELLGLLKNTccppGLITY----NSVIDGLAKKGLMKKALELYHQMLDAgifpDDITRRSLIYGFCRANLVEEA 473
Cdd:PLN03077  408 GVKLHELAERK----GLISYvvvaNALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEA 474
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 171-539 5.36e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 81.46  E-value: 5.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  171 VPDTI-TYNmiigNLCKKGHIRTALVLLEDMSLSGS-PPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQngcpPFMITYT 248
Cdd:PLN03218   370 SPEYIdAYN----RLLRDGRIKDCIDLLEDMEKRGLlDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  249 VLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSlCSHE 328
Cdd:PLN03218   442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG-CARA 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  329 ywDEVEEIL---NIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQML--EQKCLPDIVTYNTVLGAMSKEGMVDDA 403
Cdd:PLN03218   521 --GQVAKAFgayGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRA 598

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  404 IELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKET--- 480
Cdd:PLN03218   599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDArkq 678

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  481 ----------------SNRGN---------GIRG-------STYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYT 528
Cdd:PLN03218   679 giklgtvsysslmgacSNAKNwkkalelyeDIKSiklrptvSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758

                          410
                   ....*....|.
gi 1901003314  529 AIVKGVEEMGM 539
Cdd:PLN03218   759 ILLVASERKDD 769
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 145-392 5.36e-16

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 81.46  E-value: 5.36e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  145 LVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSP--PDVITYNTVIR-C--- 218
Cdd:PLN03218   513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPidPDHITVGALMKaCana 592

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  219 ------------MFDY-------------------GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVcrycGSAR----A 263
Cdd:PLN03218   593 gqvdrakevyqmIHEYnikgtpevytiavnscsqkGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA----GHAGdldkA 668

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  264 IEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQT 343
Cdd:PLN03218   669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1901003314  344 SYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLG 392
Cdd:PLN03218   749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 145-512 1.07e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 74.14  E-value: 1.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 145 LVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMslsgspPD--VITYNTVIRCMFDY 222
Cdd:PLN03081  129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PErnLASWGTIIGGLVDA 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 223 GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYcGSARAIEVLEDMAVE-GCYPDIVTYNSLVNYNCRRGNLEEVASV 301
Cdd:PLN03081  203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSARAGQQLHCCVLKtGVVGDTFVSCALIDMYSKCGDIEDARCV 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 302 IQHILshglELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCL 381
Cdd:PLN03081  282 FDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 382 PDIVTYNTVLGAMSKEGMVDDAIELLGLL--KNtccppgLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRS 459
Cdd:PLN03081  358 LDIVANTALVDLYSKWGRMEDARNVFDRMprKN------LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1901003314 460 LIYGFCRANLVEEAGQVLKE-TSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVV 512
Cdd:PLN03081  432 VLSACRYSGLSEQGWEIFQSmSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 417-466 1.15e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 1.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1901003314 417 PGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCR 466
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 313-361 2.87e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 61.23  E-value: 2.87e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1901003314 313 NTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCK 361
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 347-396 4.73e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 4.73e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1901003314 347 PTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSK 396
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 172-219 9.28e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.07  E-value: 9.28e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1901003314 172 PDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCM 219
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 382-431 1.14e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.14e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1901003314 382 PDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAK 431
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 261-544 2.82e-10

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 62.97  E-value: 2.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 261 ARAIEVLEDMAVEGCYP-DIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLL--HSLC-----SHEYWDE 332
Cdd:PLN03081  104 REALELFEILEAGCPFTlPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLlmHVKCgmlidARRLFDE 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 333 VEEilnimyqtsycPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMS----------------K 396
Cdd:PLN03081  184 MPE-----------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAglgsaragqqlhccvlK 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 397 EGMVDDAIELLGLLK--NTC-----------CPP--GLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLI 461
Cdd:PLN03081  253 TGVVGDTFVSCALIDmySKCgdiedarcvfdGMPekTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 462 YGFCRANLVEEAGQVLKETSNRGNG--IRGSTyrLVIQGLCKKKEIEMAIEVVEIMltggckPDETI--YTAIVKGVEEM 537
Cdd:PLN03081  333 RIFSRLALLEHAKQAHAGLIRTGFPldIVANT--ALVDLYSKWGRMEDARNVFDRM------PRKNLisWNALIAGYGNH 404


                  ....*..
gi 1901003314 538 GMGSEAV 544
Cdd:PLN03081  405 GRGTKAV 411
PLN03077 PLN03077
Protein ECB2; Provisional
 173-479 6.18e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 62.17  E-value: 6.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 173 DTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVE 252
Cdd:PLN03077  353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 253 LVCRYCGSARAIEVLEDMAVEgcypDIVTYNSLVNYNCRRGNLEEVASVIQHILSHgLELNTVTYNTLL----------- 321
Cdd:PLN03077  433 MYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALsacarigalmc 507

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 322 ------HSL-CSHEYWDEVEEILNIMY----QTSYC--------PTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLP 382
Cdd:PLN03077  508 gkeihaHVLrTGIGFDGFLPNALLDLYvrcgRMNYAwnqfnsheKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 383 DIVTYNTVLGAMSKEGMVDDAIELLGLLK-NTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMldaGIFPDDITRRSLI 461
Cdd:PLN03077  588 DEVTFISLLCACSRSGMVTQGLEYFHSMEeKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALL 664

                         330       340
                  ....*....|....*....|..
gi 1901003314 462 YGfCR----ANLVEEAGQVLKE 479
Cdd:PLN03077  665 NA-CRihrhVELGELAAQHIFE 685
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 277-325 3.09e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 3.09e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1901003314 277 PDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLC 325
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 115-325 1.20e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 57.96  E-value: 1.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  115 CSNGKLTDACKLVEVMARHNQVPHFPSCSNL-VRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTA 193
Cdd:PLN03218   589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIaVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  194 LVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVE 273
Cdd:PLN03218   669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1901003314  274 GCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLhSLC 325
Cdd:PLN03218   749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 207-256 2.37e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 2.37e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1901003314 207 PDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCR 256
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 113-292 3.67e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.42  E-value: 3.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  113 NLCS-NGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIR 191
Cdd:PLN03218   622 NSCSqKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314  192 TALVLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVeLVCRYCGSAR-AIEVLEDM 270
Cdd:PLN03218   702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL-VASERKDDADvGLDLLSQA 780

                          170       180
                   ....*....|....*....|..
gi 1901003314  271 AVEGCYPDIVTYNSLVNYNCRR 292
Cdd:PLN03218   781 KEDGIKPNLVMCRCITGLCLRR 802
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 345-375 5.09e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.88  E-value: 5.09e-08
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1901003314 345 YCPTVITYNILINGLCKARLLSRAIDFFYQM 375
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 420-454 1.25e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.84  E-value: 1.25e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1901003314 420 ITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDD 454
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 350-384 1.84e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 1.84e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1901003314 350 ITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDI 384
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 420-450 9.63e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.15  E-value: 9.63e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1901003314 420 ITYNSVIDGLAKKGLMKKALELYHQMLDAGI 450
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 139-371 1.52e-06

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 51.02  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 139 FPSCSnLVRGLARIDQLDKAMCILRvmvmsgGVPD--TITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVI 216
Cdd:PLN03081  260 FVSCA-LIDMYSKCGDIEDARCVFD------GMPEktTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 217 RCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEgcypDIVTYNSLVNYNCRRGNLE 296
Cdd:PLN03081  333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGT 408

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901003314 297 EVASVIQHILSHGLELNTVTYNTLLhSLCSHE-YWDEVEEILNIMYQTSYC-PTVITYNILINGLCKARLLSRAIDF 371
Cdd:PLN03081  409 KAVEMFERMIAEGVAPNHVTFLAVL-SACRYSgLSEQGWEIFQSMSENHRIkPRAMHYACMIELLGREGLLDEAYAM 484
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 169-201 1.52e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.64  E-value: 1.52e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1901003314 169 GGVPDTITYNMIIGNLCKKGHIRTALVLLEDMS 201
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 414-445 3.83e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 43.49  E-value: 3.83e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1901003314 414 CCPPGLITYNSVIDGLAKKGLMKKALELYHQM 445
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 491-533 5.92e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.51  E-value: 5.92e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1901003314 491 TYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKG 533
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 380-407 1.51e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.95  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|....*...
gi 1901003314 380 CLPDIVTYNTVLGAMSKEGMVDDAIELL 407
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELL 30
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 183-321 4.26e-05

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 44.69  E-value: 4.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 183 NLC-KKGHIRTALVLLEDMSLSGSPPDVITYNTVIR-C--------MFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVE 252
Cdd:pfam17177  19 DKCsKHADATGALALYDAAKAEGVRLAQYHYNVLLYlCskaadatdLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVAR 98

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1901003314 253 LVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLL 321
Cdd:pfam17177  99 LAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALL 167
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 350-380 5.80e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.14  E-value: 5.80e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1901003314 350 ITYNILINGLCKARLLSRAIDFFYQMLEQKC 380
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 308-340 7.27e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.02  E-value: 7.27e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1901003314 308 HGLELNTVTYNTLLHSLCSHEYWDEVEEILNIM 340
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 435-532 7.84e-05

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 43.92  E-value: 7.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 435 MKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEI 514
Cdd:pfam17177  71 ADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEH 150

                          90
                  ....*....|....*...
gi 1901003314 515 MLTGGCKPDETIYTAIVK 532
Cdd:pfam17177 151 MLAHGVELEEPELAALLK 168
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 449-479 1.10e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.64  E-value: 1.10e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1901003314 449 GIFPDDITRRSLIYGFCRANLVEEAGQVLKE 479
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 141-186 1.64e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 1.64e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1901003314 141 SCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCK 186
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 175-209 2.15e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 2.15e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1901003314 175 ITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDV 209
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 273-297 7.76e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.94  E-value: 7.76e-04
                          10        20
                  ....*....|....*....|....*
gi 1901003314 273 EGCYPDIVTYNSLVNYNCRRGNLEE 297
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDE 25
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 491-524 1.15e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.15e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1901003314 491 TYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDE 524
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 382-426 1.44e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 1.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1901003314 382 PDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVI 426
Cdd:pfam13812  13 LNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 309-357 1.75e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.95  E-value: 1.75e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1901003314 309 GLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILIN 357
Cdd:pfam13812  10 GIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 195-251 1.88e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.95  E-value: 1.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1901003314 195 VLLEDMSLSGSPPDVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLV 251
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 315-349 2.37e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 2.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1901003314 315 VTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTV 349
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 347-397 3.23e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.18  E-value: 3.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1901003314 347 PTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKE 397
Cdd:pfam13812  13 LNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 385-417 3.24e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 3.24e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1901003314 385 VTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPP 417
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PLN03077 PLN03077
Protein ECB2; Provisional
 117-407 4.35e-03

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 39.83  E-value: 4.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 117 NGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVL 196
Cdd:PLN03077  367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 197 LEDMSlsgsPPDVITYNTVIRCM-FDYGNAEQAIRFwkDQLQNGCPPFMITYTVLVELVCR----YCGSARAIEVLE-DM 270
Cdd:PLN03077  447 FHNIP----EKDVISWTSIIAGLrLNNRCFEALIFF--RQMLLTLKPNSVTLIAALSACARigalMCGKEIHAHVLRtGI 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901003314 271 AVEGCYPdivtyNSLVNYNCRRGNLEEVASviqHILSHglELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVI 350
Cdd:PLN03077  521 GFDGFLP-----NALLDLYVRCGRMNYAWN---QFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1901003314 351 TYNILINGLCKARLLSRAIDFFYQMLEQ-KCLPDIVTYNTVLGAMSKEGMVDDAIELL 407
Cdd:PLN03077  591 TFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFI 648
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 315-340 5.82e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.36  E-value: 5.82e-03
                          10        20
                  ....*....|....*....|....*.
gi 1901003314 315 VTYNTLLHSLCSHEYWDEVEEILNIM 340
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 210-242 6.78e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.35  E-value: 6.78e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1901003314 210 ITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPP 242
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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