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Conserved domains on  [gi|30268178|emb|CAD89915|]
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hypothetical protein [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 10245587)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins

EC:  3.4.19.12
Gene Ontology:  GO:0004843|GO:0016579
PubMed:  10603300

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
283-491 1.11e-72

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 231.51  E-value: 1.11e-72
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 283 AFQTLS-QSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvytnARKQLLISAVPAV 361
Cdd:cd02667  95 PFLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK----------------------AKKQYLISKLPPV 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 362 LILHLKRFHQAGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGGKVLYGLYGIVEHSGSMREGHYTAYVKVRTPSRKL 440
Cdd:cd02667 153 LVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 30268178 441 SEHNtkkkNVPGLKAADSESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 491
Cdd:cd02667 233 SDLT----KSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
9-67 5.09e-11

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 63.17  E-value: 5.09e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30268178   9 NSRFFLPQTLSWAPRFKDFQQQDSQELLHYLLDAVRT----------------EETK-ISTVKDPFIDISLPIIEE 67
Cdd:cd02667  31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRTfidsifggeltstimcESCGtVSLVYEPFLDLSLPRSDE 106
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
283-491 1.11e-72

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 231.51  E-value: 1.11e-72
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 283 AFQTLS-QSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvytnARKQLLISAVPAV 361
Cdd:cd02667  95 PFLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK----------------------AKKQYLISKLPPV 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 362 LILHLKRFHQAGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGGKVLYGLYGIVEHSGSMREGHYTAYVKVRTPSRKL 440
Cdd:cd02667 153 LVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 30268178 441 SEHNtkkkNVPGLKAADSESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 491
Cdd:cd02667 233 SDLT----KSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
278-490 4.77e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 119.08  E-value: 4.77e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178   278 YSPQNAFQTLSQSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKNKQKYqeetsfaekkvegvytnarKQLLISA 357
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAI-------------------KQLKISR 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178   358 VPAVLILHLKRFHQAGLSLRKVNRHVDFPLMLDLAPFCsATCKNASVGGKVLYGLYGIVEHSGSMREGHYTAYVKvrtps 437
Cdd:pfam00443 203 LPPVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYL-AEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK----- 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30268178   438 rklsehntkkknvpglkaadSESAGQWVHVSDTYLQVVPESRA-LSAQAYLLFY 490
Cdd:pfam00443 277 --------------------AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
252-492 7.14e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 74.15  E-value: 7.14e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 252 QDFDRENQPLNIsNNLCFLEGKHLRSYSPQNAFQTLSQSyITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKNKQky 331
Cdd:COG5560 631 EEEGQMNFNDAV-VISCEWEEKRYLSLFSYDPLWTIREI-GAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ-- 706
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 332 qeetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLM-LDLAPFCSATcknasVGGKVLY 410
Cdd:COG5560 707 -----------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV-----DDPRLIY 764
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 411 GLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglKAADsesaGQWVHVSDTYLQVVPESRALSAQAYLLFY 490
Cdd:COG5560 765 DLYAVDNHYGGLSGGHYTAYAR---------------------NFAN----NGWYLFDDSRITEVDPEDSVTSSAYVLFY 819

                ..
gi 30268178 491 ER 492
Cdd:COG5560 820 RR 821
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
9-67 5.09e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 63.17  E-value: 5.09e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30268178   9 NSRFFLPQTLSWAPRFKDFQQQDSQELLHYLLDAVRT----------------EETK-ISTVKDPFIDISLPIIEE 67
Cdd:cd02667  31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRTfidsifggeltstimcESCGtVSLVYEPFLDLSLPRSDE 106
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
283-491 1.11e-72

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 231.51  E-value: 1.11e-72
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 283 AFQTLS-QSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvytnARKQLLISAVPAV 361
Cdd:cd02667  95 PFLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK----------------------AKKQYLISKLPPV 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 362 LILHLKRFHQAGL-SLRKVNRHVDFPLMLDLAPFCSATCKNASVGGKVLYGLYGIVEHSGSMREGHYTAYVKVRTPSRKL 440
Cdd:cd02667 153 LVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|.
gi 30268178 441 SEHNtkkkNVPGLKAADSESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 491
Cdd:cd02667 233 SDLT----KSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
292-491 1.69e-32

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 124.52  E-value: 1.69e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 292 ITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvyTNARKQLLISAVPAVLILHLKRFHQ 371
Cdd:cd02257  93 VKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKK--------------------QEATKRLKIKKLPPVLIIHLKRFSF 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 372 AGL-SLRKVNRHVDFPLMLDLAPFCSATCKN-ASVGGKVLYGLYGIVEHSG-SMREGHYTAYVKVRTPsrklsehntkkk 448
Cdd:cd02257 153 NEDgTKEKLNTKVSFPLELDLSPYLSEGEKDsDSDNGSYKYELVAVVVHSGtSADSGHYVAYVKDPSD------------ 220
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 30268178 449 nvpglkaadsesaGQWVHVSDTYLQVVPESRAL-----SAQAYLLFYE 491
Cdd:cd02257 221 -------------GKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
299-490 3.49e-32

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 125.08  E-value: 3.49e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 299 SIQSCLYQFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvYTNARKQLLISAVPAVLILHLKRFhqAGLSLRK 378
Cdd:cd02661 163 SLEDALEQFTKPEQLDGENKYKCERCKK-------------------KVKASKQLTIHRAPNVLTIHLKRF--SNFRGGK 221
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 379 VNRHVDFPLMLDLAPFCSAtcknaSVGGKVLYGLYGIVEHSG-SMREGHYTAYVKvrtpsrklsehntkkknvpglkaad 457
Cdd:cd02661 222 INKQISFPETLDLSPYMSQ-----PNDGPLKYKLYAVLVHSGfSPHSGHYYCYVK------------------------- 271
                       170       180       190
                ....*....|....*....|....*....|...
gi 30268178 458 sESAGQWVHVSDTYLQVVPESRALSAQAYLLFY 490
Cdd:cd02661 272 -SSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-491 4.00e-30

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 117.39  E-value: 4.00e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 296 KECSIQSCLYQFTSMELLMGNNKLLCENCTKNkqkyqeetsfaekkvegvyTNARKQLLISAVPAVLILHLKRFHQAGLS 375
Cdd:cd02674  82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKK-------------------RKATKKLTISRLPKVLIIHLKRFSFSRGS 142
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 376 LRKVNRHVDFPL-MLDLAPFCSATCKNasvgGKVLYGLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglk 454
Cdd:cd02674 143 TRKLTTPVTFPLnDLDLTPYVDTRSFT----GPFKYDLYAVVNHYGSLNGGHYTAYCK---------------------- 196
                       170       180       190
                ....*....|....*....|....*....|....*..
gi 30268178 455 aadSESAGQWVHVSDTYLQVVPESRALSAQAYLLFYE 491
Cdd:cd02674 197 ---NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
278-490 4.77e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 119.08  E-value: 4.77e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178   278 YSPQNAFQTLSQSYITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKNKQKYqeetsfaekkvegvytnarKQLLISA 357
Cdd:pfam00443 142 FEPFSDLSLPIPGDSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQDAI-------------------KQLKISR 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178   358 VPAVLILHLKRFHQAGLSLRKVNRHVDFPLMLDLAPFCsATCKNASVGGKVLYGLYGIVEHSGSMREGHYTAYVKvrtps 437
Cdd:pfam00443 203 LPPVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLSRYL-AEELKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK----- 276
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30268178   438 rklsehntkkknvpglkaadSESAGQWVHVSDTYLQVVPESRA-LSAQAYLLFY 490
Cdd:pfam00443 277 --------------------AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
299-490 4.42e-28

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 114.01  E-value: 4.42e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 299 SIQSCLYQFTSMELLmGNNKLLCENCtKNKQkyqeetsfaekkvegvytNARKQLLISAVPAVLILHLKRF-HQAGLSLR 377
Cdd:cd02660 177 TLSDCLDRFTRPEKL-GDFAYKCSGC-GSTQ------------------EATKQLSIKKLPPVLCFQLKRFeHSLNKTSR 236
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 378 KVNRHVDFPLMLDLAPFCSATCKN----ASVGGKVLYGLYGIVEHSGSMREGHYTAYVKVRTpsrklsehntkkknvpgl 453
Cdd:cd02660 237 KIDTYVQFPLELNMTPYTSSSIGDtqdsNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQGD------------------ 298
                       170       180       190
                ....*....|....*....|....*....|....*..
gi 30268178 454 kaadsesaGQWVHVSDTYLQVVPESRALSAQAYLLFY 490
Cdd:cd02660 299 --------GQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
299-493 1.26e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 89.62  E-value: 1.26e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 299 SIQSCLYQFTSMELLMGNNKLLCENCtknkqkyqeetsfaEKKVEgvytnARKQLLISAVPAVLILHLKRFHQAGLSLR- 377
Cdd:cd02659 152 NLEESLDAYVQGETLEGDNKYFCEKC--------------GKKVD-----AEKGVCFKKLPPVLTLQLKRFEFDFETMMr 212
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 378 -KVNRHVDFPLMLDLAPFCSATCKNASVGGKV------LYGLYGIVEHSGSMREGHYTAYVKVRTPSR----------KL 440
Cdd:cd02659 213 iKINDRFEFPLELDMEPYTEKGLAKKEGDSEKkdsesyIYELHGVLVHSGDAHGGHYYSYIKDRDDGKwykfnddvvtPF 292
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|...
gi 30268178 441 SEHNTKKKNVPGlkaadsesagqwvHVSDTYLQVVPESRALSAQAYLLFYERV 493
Cdd:cd02659 293 DPNDAEEECFGG-------------EETQKTYDSGPRAFKRTTNAYMLFYERK 332
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
350-491 1.94e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 81.64  E-value: 1.94e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 350 RKQLLISAVPAVLILHLKR--FHQAGLSLRKvNRHVDFPLMLDlapfcsatcknasvggKVLYGLYGIVEHSGSMREGHY 427
Cdd:cd02662 118 RCQTVIVRLPQILCIHLSRsvFDGRGTSTKN-SCKVSFPERLP----------------KVLYRLRAVVVHYGSHSSGHY 180
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30268178 428 TAYVKVRTPSRKLSEHNTKKknvpgLKAADSESAGQWVHVSDTYLQVVPESRAL-SAQAYLLFYE 491
Cdd:cd02662 181 VCYRRKPLFSKDKEPGSFVR-----MREGPSSTSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
296-491 3.18e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 76.19  E-value: 3.18e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 296 KECSIQSCLYQFTSMELLMGNNKLLCENCtknkQKYQEetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGls 375
Cdd:cd02663 145 QNTSITSCLRQFSATETLCGRNKFYCDEC----CSLQE---------------AEKRMKIKKLPKILALHLKRFKYDE-- 203
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 376 lrKVNRH------VDFPLMLDLaPFCSATCKNASvggkVLYGLYGIVEHSGS--MReGHYTAYVKvrtpsrklsehntkk 447
Cdd:cd02663 204 --QLNRYiklfyrVVFPLELRL-FNTTDDAENPD----RLYELVAVVVHIGGgpNH-GHYVSIVK--------------- 260
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 30268178 448 knvpglkaadseSAGQWV--------HVSDTYLQVVPESRALSAQAYLLFYE 491
Cdd:cd02663 261 ------------SHGGWLlfddetveKIDENAVEEFFGDSPNQATAYVLFYQ 300
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
306-432 4.51e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 73.39  E-value: 4.51e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 306 QFTSMELLMGNNKLLCENCTKnkqkyqeetsfaekkvegvYTNARKQLLISAVPAVLILHLKRFHQAGLS------LRKV 379
Cdd:cd02671 188 QFASVERIVGEDKYFCENCHH-------------------YTEAERSLLFDKLPEVITIHLKCFAANGSEfdcyggLSKV 248
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 30268178 380 NRHVDFPLMLDLAPFCSATCKNasvggkvLYGLYGIVEHSG-SMREGHYTAYVK 432
Cdd:cd02671 249 NTPLLTPLKLSLEEWSTKPKND-------VYRLFAVVMHSGaTISSGHYTAYVR 295
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
267-432 5.96e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 72.84  E-value: 5.96e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 267 LCFLEGKHLRSYSP--QNAFQTLSQ---SYITTSKEC---------------------SIQSCLYQFTSMELLMGNNKLL 320
Cdd:cd02668  99 LSLLEAKLSKSKNPdlKNIVQDLFRgeySYVTQCSKCgresslpskfyelelqlkghkTLEECIDEFLKEEQLTGDNQYF 178
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 321 CENCTKNkqkyqeetsfaekkvegvyTNARKQLLISAVPAVLILHLKR--FHQAGLSLRKVNRHVDFPLMLDLAPFCsAT 398
Cdd:cd02668 179 CESCNSK-------------------TDATRRIRLTTLPPTLNFQLLRfvFDRKTGAKKKLNASISFPEILDMGEYL-AE 238
                       170       180       190
                ....*....|....*....|....*....|....*
gi 30268178 399 CKNasvgGKVLYGLYGIVEHSG-SMREGHYTAYVK 432
Cdd:cd02668 239 SDE----GSYVYELSGVLIHQGvSAYSGHYIAHIK 269
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
252-492 7.14e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 74.15  E-value: 7.14e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 252 QDFDRENQPLNIsNNLCFLEGKHLRSYSPQNAFQTLSQSyITTSKECSIQSCLYQFTSMELLMGNNKLLCENCTKNKQky 331
Cdd:COG5560 631 EEEGQMNFNDAV-VISCEWEEKRYLSLFSYDPLWTIREI-GAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ-- 706
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 332 qeetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLM-LDLAPFCSATcknasVGGKVLY 410
Cdd:COG5560 707 -----------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV-----DDPRLIY 764
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 411 GLYGIVEHSGSMREGHYTAYVKvrtpsrklsehntkkknvpglKAADsesaGQWVHVSDTYLQVVPESRALSAQAYLLFY 490
Cdd:COG5560 765 DLYAVDNHYGGLSGGHYTAYAR---------------------NFAN----NGWYLFDDSRITEVDPEDSVTSSAYVLFY 819

                ..
gi 30268178 491 ER 492
Cdd:COG5560 820 RR 821
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
298-491 3.24e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 70.60  E-value: 3.24e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 298 CSIQSCLYQFTSMELLMGNNKLLCENCTKNKQkyqeetsfAEKKVEgvytnarkqllISAVPAVLILHLKRFH--QAGLS 375
Cdd:cd02664 134 PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQD--------AEKEMK-----------VTGAPEYLILTLLRFSydQKTHV 194
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 376 LRKVNRHVDFPLMLDLaPFCSATCKNASVGGK---------------VLYGLYGIVEHSG-SMREGHYTAYVKVRTPSRK 439
Cdd:cd02664 195 REKIMDNVSINEVLSL-PVRVESKSSESPLEKkeeesgddgelvtrqVHYRLYAVVVHSGySSESGHYFTYARDQTDADS 273
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30268178 440 lsehnTKKKNVPGLKAADSESAGQWVHVSDTYlqvVPESRALSAQ----------AYLLFYE 491
Cdd:cd02664 274 -----TGQECPEPKDAEENDESKNWYLFNDSR---VTFSSFESVQnvtsrfpkdtPYILFYE 327
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
299-432 2.90e-11

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 66.05  E-value: 2.90e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178  299 SIQSCLYQFTSMELLMGNNKLLCEnctknKQKYQEetsfaekkvegvytnARKQLLISAVPAVLILHLKRFHQAGLS--L 376
Cdd:COG5077  339 NLQESFRRYIQVETLDGDNRYNAE-----KHGLQD---------------AKKGVIFESLPPVLHLQLKRFEYDFERdmM 398
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 30268178  377 RKVNRHVDFPLMLDLAPFCSATCKNASVGGKVlYGLYGIVEHSGSMREGHYTAYVK 432
Cdd:COG5077  399 VKINDRYEFPLEIDLLPFLDRDADKSENSDAV-YVLYGVLVHSGDLHEGHYYALLK 453
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
324-492 3.95e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 63.67  E-value: 3.95e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 324 CTKNKQKYQ--EETSFAEKKVEGVYTNARKQLLISAV--PAVLILHLKRFHQAGlSLRKVNRHVDFPLMLDLAPfcsatC 399
Cdd:COG5533 141 EFIDNMEELvdDETGVKAKENEELEVQAKQEYEVSFVklPKILTIQLKRFANLG-GNQKIDTEVDEKFELPVKH-----D 214
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 400 KNASVGGKVLYGLYGIVEHSGSMREGHYTAYVKVRtpsrklsehntkkknvpglkaadsesaGQWVHVSDTYLQVVPESR 479
Cdd:COG5533 215 QILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKKG---------------------------GKWEKANDSDVTPVSEEE 267
                       170
                ....*....|....*.
gi 30268178 480 AL---SAQAYLLFYER 492
Cdd:COG5533 268 AInekAKNAYLYFYER 283
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
9-67 5.09e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 63.17  E-value: 5.09e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30268178   9 NSRFFLPQTLSWAPRFKDFQQQDSQELLHYLLDAVRT----------------EETK-ISTVKDPFIDISLPIIEE 67
Cdd:cd02667  31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRTfidsifggeltstimcESCGtVSLVYEPFLDLSLPRSDE 106
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
328-447 1.38e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 62.35  E-value: 1.38e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 328 KQKYQEETsfaEKKVEGVYTNA--RKQLLISAVPAVLILHLKRFHQAGLSLR--KVNRHVDFPLMLDLAPFCSATCknas 403
Cdd:cd02657 167 KKGLEEEI---EKHSPTLGRDAiyTKTSRISRLPKYLTVQFVRFFWKRDIQKkaKILRKVKFPFELDLYELCTPSG---- 239
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 30268178 404 vggkvLYGLYGIVEHSG-SMREGHYTAYVKVRTPSR-------KLSEHNTKK 447
Cdd:cd02657 240 -----YYELVAVITHQGrSADSGHYVAWVRRKNDGKwikfdddKVSEVTEED 286
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
337-491 4.91e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 48.47  E-value: 4.91e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 337 FAEKKVE------GVYTNARKQLLISAVPAVLILHLKRFH-QAGLSLRKVNRHVDFPLMLDlapfcsatcknasvGGKvl 409
Cdd:cd02658 188 FAPETIEdfcstcKEKTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELG--------------PGK-- 251
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 410 YGLYGIVEHSG-SMREGHYTAYVKvrtpsrklsehntkkknvpglKAADSEsaGQWVHVSDTYLQVVPESRALSAQAYLL 488
Cdd:cd02658 252 YELIAFISHKGtSVHSGHYVAHIK---------------------KEIDGE--GKWVLFNDEKVVASQDPPEMKKLGYIY 308

                ...
gi 30268178 489 FYE 491
Cdd:cd02658 309 FYQ 311
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
355-491 2.20e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 45.98  E-value: 2.20e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 355 ISAVPAVLILHLKRFHQAGLSLRKVNRHVDFPLMLDLAPF----------CSATCKNAS-------VGGKVLYGLYGIVE 417
Cdd:cd02670  95 FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFvaddpracskCQLECRVCYddkdfspTCGKFKLSLCSAVC 174
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30268178 418 HSGSMRE-GHYTAYVKVrtpsrklsehNTKKKNVPGLKAADSesagQWVHVSD-------TYLQVVPESRALSaQAYLLF 489
Cdd:cd02670 175 HRGTSLEtGHYVAFVRY----------GSYSLTETDNEAYNA----QWVFFDDmadrdgvSNGFNIPAARLLE-DPYMLF 239

                ..
gi 30268178 490 YE 491
Cdd:cd02670 240 YQ 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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