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Conserved domains on  [gi|1991450757|emb|CAE6912524|]
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unnamed protein product [Symbiodinium sp. CCMP2592]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 323-351 1.65e-06

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


:

Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 44.44  E-value: 1.65e-06
                          10        20
                  ....*....|....*....|....*....
gi 1991450757 323 PGWEQHWSEEHsCVYYWHKATKQSSWERP 351
Cdd:cd00201     2 PGWEERWDPDG-RVYYYNHNTKETQWEDP 29
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 107-137 6.83e-06

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


:

Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 42.49  E-value: 6.83e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1991450757 107 LPTGWKRVWSEEhKEWYFWNRSTKESRWTRP 137
Cdd:pfam00397   1 LPPGWEERWDPD-GRVYYYNHETGETQWEKP 30
PRP40 super family cl34905
Splicing factor [RNA processing and modification];
123-202 5.30e-04

Splicing factor [RNA processing and modification];


The actual alignment was detected with superfamily member COG5104:

Pssm-ID: 227435 [Multi-domain]  Cd Length: 590  Bit Score: 42.37  E-value: 5.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1991450757 123 YFWNRSTKESRWTRPRDADQEEEEELPEGWEKVLDVERGLWYYWHRPTKTSTWDRPeaptqatSEEKKPDDSAEALQARV 202
Cdd:COG5104    28 YYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIP-------PERKKVEPIAEQKHDER 100
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 350-439 7.65e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 7.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1991450757  350 RPALPVQGGAEPEVAPITPG-ANQARA--PDTPSHQCQGAMPGRPKGPPMRPQLPTRKPPwmqsaAHTAGQAQPNGRSWR 426
Cdd:PHA03247  2560 PPAAPDRSVPPPRPAPRPSEpAVTSRArrPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634

                           90
                   ....*....|...
gi 1991450757  427 PFRPQIRPAAKRP 439
Cdd:PHA03247  2635 ANEPDPHPPPTVP 2647
S1_like super family cl09927
S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of ...
 230-271 7.64e-03

S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.


The actual alignment was detected with superfamily member pfam00313:

Pssm-ID: 471952  Cd Length: 66  Bit Score: 34.91  E-value: 7.64e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1991450757 230 SNGDSKVFVNWRDVQDD--QMLSVGDRVDFLVCSDDGGLRALDV 271
Cdd:pfam00313  20 EDGDKDVFVHFSAIQGDgfRSLQEGQKVEFEVVEGTKGPQAANV 63
 
Name Accession Description Interval E-value
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 323-351 1.65e-06

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 44.44  E-value: 1.65e-06
                          10        20
                  ....*....|....*....|....*....
gi 1991450757 323 PGWEQHWSEEHsCVYYWHKATKQSSWERP 351
Cdd:cd00201     2 PGWEERWDPDG-RVYYYNHNTKETQWEDP 29
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 321-351 4.71e-06

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 42.88  E-value: 4.71e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1991450757 321 LLPGWEQHWSEEhSCVYYWHKATKQSSWERP 351
Cdd:pfam00397   1 LPPGWEERWDPD-GRVYYYNHETGETQWEKP 30
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 107-137 6.83e-06

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 42.49  E-value: 6.83e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1991450757 107 LPTGWKRVWSEEhKEWYFWNRSTKESRWTRP 137
Cdd:pfam00397   1 LPPGWEERWDPD-GRVYYYNHETGETQWEKP 30
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 108-139 1.13e-05

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 41.74  E-value: 1.13e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1991450757 108 PTGWKRVWSEEHKeWYFWNRSTKESRWTRPRD 139
Cdd:cd00201     1 PPGWEERWDPDGR-VYYYNHNTKETQWEDPRE 31
WW smart00456
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ...
 106-139 1.61e-05

Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.


Pssm-ID: 197736 [Multi-domain]  Cd Length: 33  Bit Score: 41.43  E-value: 1.61e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1991450757  106 SLPTGWKRVWSEEhKEWYFWNRSTKESRWTRPRD 139
Cdd:smart00456   1 PLPPGWEERKDPD-GRPYYYNHETKETQWEKPRE 33
WW smart00456
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ...
 320-353 1.69e-05

Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.


Pssm-ID: 197736 [Multi-domain]  Cd Length: 33  Bit Score: 41.43  E-value: 1.69e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1991450757  320 PLLPGWEQHWSEEhSCVYYWHKATKQSSWERPAL 353
Cdd:smart00456   1 PLPPGWEERKDPD-GRPYYYNHETKETQWEKPRE 33
PRP40 COG5104
Splicing factor [RNA processing and modification];
123-202 5.30e-04

Splicing factor [RNA processing and modification];


Pssm-ID: 227435 [Multi-domain]  Cd Length: 590  Bit Score: 42.37  E-value: 5.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1991450757 123 YFWNRSTKESRWTRPRDADQEEEEELPEGWEKVLDVERGLWYYWHRPTKTSTWDRPeaptqatSEEKKPDDSAEALQARV 202
Cdd:COG5104    28 YYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIP-------PERKKVEPIAEQKHDER 100
PHA03247 PHA03247
large tegument protein UL36; Provisional
 350-439 7.65e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 7.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1991450757  350 RPALPVQGGAEPEVAPITPG-ANQARA--PDTPSHQCQGAMPGRPKGPPMRPQLPTRKPPwmqsaAHTAGQAQPNGRSWR 426
Cdd:PHA03247  2560 PPAAPDRSVPPPRPAPRPSEpAVTSRArrPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634

                           90
                   ....*....|...
gi 1991450757  427 PFRPQIRPAAKRP 439
Cdd:PHA03247  2635 ANEPDPHPPPTVP 2647
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 159-178 7.35e-03

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 34.02  E-value: 7.35e-03
                          10        20
                  ....*....|....*....|
gi 1991450757 159 ERGLWYYWHRPTKTSTWDRP 178
Cdd:pfam00397  11 PDGRVYYYNHETGETQWEKP 30
CSD pfam00313
'Cold-shock' DNA-binding domain;
230-271 7.64e-03

'Cold-shock' DNA-binding domain;


Pssm-ID: 278729  Cd Length: 66  Bit Score: 34.91  E-value: 7.64e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1991450757 230 SNGDSKVFVNWRDVQDD--QMLSVGDRVDFLVCSDDGGLRALDV 271
Cdd:pfam00313  20 EDGDKDVFVHFSAIQGDgfRSLQEGQKVEFEVVEGTKGPQAANV 63
 
Name Accession Description Interval E-value
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 323-351 1.65e-06

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 44.44  E-value: 1.65e-06
                          10        20
                  ....*....|....*....|....*....
gi 1991450757 323 PGWEQHWSEEHsCVYYWHKATKQSSWERP 351
Cdd:cd00201     2 PGWEERWDPDG-RVYYYNHNTKETQWEDP 29
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 321-351 4.71e-06

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 42.88  E-value: 4.71e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1991450757 321 LLPGWEQHWSEEhSCVYYWHKATKQSSWERP 351
Cdd:pfam00397   1 LPPGWEERWDPD-GRVYYYNHETGETQWEKP 30
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 107-137 6.83e-06

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 42.49  E-value: 6.83e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1991450757 107 LPTGWKRVWSEEhKEWYFWNRSTKESRWTRP 137
Cdd:pfam00397   1 LPPGWEERWDPD-GRVYYYNHETGETQWEKP 30
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 108-139 1.13e-05

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 41.74  E-value: 1.13e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1991450757 108 PTGWKRVWSEEHKeWYFWNRSTKESRWTRPRD 139
Cdd:cd00201     1 PPGWEERWDPDGR-VYYYNHNTKETQWEDPRE 31
WW smart00456
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ...
 106-139 1.61e-05

Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.


Pssm-ID: 197736 [Multi-domain]  Cd Length: 33  Bit Score: 41.43  E-value: 1.61e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1991450757  106 SLPTGWKRVWSEEhKEWYFWNRSTKESRWTRPRD 139
Cdd:smart00456   1 PLPPGWEERKDPD-GRPYYYNHETKETQWEKPRE 33
WW smart00456
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ...
 320-353 1.69e-05

Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.


Pssm-ID: 197736 [Multi-domain]  Cd Length: 33  Bit Score: 41.43  E-value: 1.69e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1991450757  320 PLLPGWEQHWSEEhSCVYYWHKATKQSSWERPAL 353
Cdd:smart00456   1 PLPPGWEERKDPD-GRPYYYNHETKETQWEKPRE 33
PRP40 COG5104
Splicing factor [RNA processing and modification];
123-202 5.30e-04

Splicing factor [RNA processing and modification];


Pssm-ID: 227435 [Multi-domain]  Cd Length: 590  Bit Score: 42.37  E-value: 5.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1991450757 123 YFWNRSTKESRWTRPRDADQEEEEELPEGWEKVLDVERGLWYYWHRPTKTSTWDRPeaptqatSEEKKPDDSAEALQARV 202
Cdd:COG5104    28 YYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIP-------PERKKVEPIAEQKHDER 100
PHA03247 PHA03247
large tegument protein UL36; Provisional
 350-439 7.65e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 7.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1991450757  350 RPALPVQGGAEPEVAPITPG-ANQARA--PDTPSHQCQGAMPGRPKGPPMRPQLPTRKPPwmqsaAHTAGQAQPNGRSWR 426
Cdd:PHA03247  2560 PPAAPDRSVPPPRPAPRPSEpAVTSRArrPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634

                           90
                   ....*....|...
gi 1991450757  427 PFRPQIRPAAKRP 439
Cdd:PHA03247  2635 ANEPDPHPPPTVP 2647
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 159-178 7.35e-03

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 34.02  E-value: 7.35e-03
                          10        20
                  ....*....|....*....|
gi 1991450757 159 ERGLWYYWHRPTKTSTWDRP 178
Cdd:pfam00397  11 PDGRVYYYNHETGETQWEKP 30
CSD pfam00313
'Cold-shock' DNA-binding domain;
230-271 7.64e-03

'Cold-shock' DNA-binding domain;


Pssm-ID: 278729  Cd Length: 66  Bit Score: 34.91  E-value: 7.64e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1991450757 230 SNGDSKVFVNWRDVQDD--QMLSVGDRVDFLVCSDDGGLRALDV 271
Cdd:pfam00313  20 EDGDKDVFVHFSAIQGDgfRSLQEGQKVEFEVVEGTKGPQAANV 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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