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Conserved domains on  [gi|40035218|emb|CAE90966|]
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unnamed protein product [Homo sapiens]

Protein Classification

Gryzun-like domain-containing protein( domain architecture ID 10579270)

Gryzun-like domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gryzun-like pfam12742
Gryzun, putative Golgi trafficking; Members of this family are involved in Golgi trafficking.
 291-350 9.59e-22

Gryzun, putative Golgi trafficking; Members of this family are involved in Golgi trafficking.


:

Pssm-ID: 403829  Cd Length: 56  Bit Score: 87.43  E-value: 9.59e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 40035218   291 LQNKTDLVqdveISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNI 350
Cdd:pfam12742   1 LEKESELL----IIVEESDNFFFSGPKKLNFHMWPGEEQEIPFNFYPLMAGLLYLPKINI 56
 
Name Accession Description Interval E-value
Gryzun-like pfam12742
Gryzun, putative Golgi trafficking; Members of this family are involved in Golgi trafficking.
 291-350 9.59e-22

Gryzun, putative Golgi trafficking; Members of this family are involved in Golgi trafficking.


Pssm-ID: 403829  Cd Length: 56  Bit Score: 87.43  E-value: 9.59e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 40035218   291 LQNKTDLVqdveISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNI 350
Cdd:pfam12742   1 LEKESELL----IIVEESDNFFFSGPKKLNFHMWPGEEQEIPFNFYPLMAGLLYLPKINI 56
 
Name Accession Description Interval E-value
Gryzun-like pfam12742
Gryzun, putative Golgi trafficking; Members of this family are involved in Golgi trafficking.
 291-350 9.59e-22

Gryzun, putative Golgi trafficking; Members of this family are involved in Golgi trafficking.


Pssm-ID: 403829  Cd Length: 56  Bit Score: 87.43  E-value: 9.59e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 40035218   291 LQNKTDLVqdveISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNI 350
Cdd:pfam12742   1 LEKESELL----IIVEESDNFFFSGPKKLNFHMWPGEEQEIPFNFYPLMAGLLYLPKINI 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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