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Conserved domains on  [gi|47220029|emb|CAG12177|]
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unnamed protein product [Tetraodon nigroviridis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CAMSAP_CKK smart01051
Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of ...
 1330-1441 6.17e-54

Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin.


:

Pssm-ID: 198119  Cd Length: 129  Bit Score: 184.48  E-value: 6.17e-54
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    1330 GPKLYKEPSFKSNKFIIHNAITRCCLAGKVNEPQKNKIVEEMEKSAANHFLILFRDASCQFRAVYTMNPETEEMHYSSCQ 1409
Cdd:smart01051    1 GPKLYKEPSAKSNRFIIHNALSHCCLAGKVNEPQKNKILEEMEKSEANHFLILFRDAKCQFRALYTLNPETEELVKLYGN 80

                            90       100       110
                    ....*....|....*....|....*....|....
gi 47220029    1410 DAAVL--LTTDCLQQTSSSDETFGDVKKDEQQET 1441
Cdd:smart01051   81 GPRVItsKMVESLYKYDSSRKQFTQIPSKTLSVS 114
CAMSAP_CH pfam11971
CAMSAP CH domain; This domain is the N-terminal CH domain from the CAMSAP proteins.
 228-308 4.57e-29

CAMSAP CH domain; This domain is the N-terminal CH domain from the CAMSAP proteins.


:

Pssm-ID: 432229  Cd Length: 85  Bit Score: 111.62  E-value: 4.57e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    228 QSRHKPVFPVV-NEVKDLSSGCAIAAVIHYYCPGLLRLEDICMKESMPVADSLYNLQFIREFCDSCLK-SCCHLALEDML 305
Cdd:pfam11971    3 SQRSLPLSPPVeDLLRDLSDGCALAALIHFYCPQLIDLEDICLKESMSLADSLYNIQLLQEFCQRHLGnRCCHLTLEDLL 82


                   ...
gi 47220029    306 YIP 308
Cdd:pfam11971   83 YAR 85
CAMSAP_CC1 pfam17095
Spectrin-binding region of Ca2+-Calmodulin; CAMSAP_CC1 is the conserved region on ...
 653-710 1.21e-21

Spectrin-binding region of Ca2+-Calmodulin; CAMSAP_CC1 is the conserved region on calmodulin-regulated spectrin-associated proteins in eukaryotes that binds spectrin. CAMSAPs are vertebrate microtubule-binding proteins, representatives of a family of cytoskeletal proteins that arose in animals. This conserved CC1 region binds to both spectrin and Ca2+/calmodulin in vitro, although the binding of Ca2+/calmodulin inhibited the binding of spectrin. CC1 appears to be a functional region of CAMSAP1 that links spectrin-binding to neurite outgrowth.


:

Pssm-ID: 465344 [Multi-domain]  Cd Length: 59  Bit Score: 89.67  E-value: 1.21e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 47220029    653 KSEESPSNSPQLN-DMSELGVRLEEKRRAIEAQKKRIEAIFAKHRQRVGKSAFRQLKKE 710
Cdd:pfam17095    1 PGDDSPSASPELAsELSQLRLKLEEKRRAIEQQKKRMEAAFARQRQKLGKAAFLQVVKK 59
PRK13335 super family cl31400
superantigen-like protein SSL3; Reviewed;
783-915 1.08e-04

superantigen-like protein SSL3; Reviewed;


The actual alignment was detected with superfamily member PRK13335:

Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 46.27  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029   783 EKVSGTAGQKTAPLGdyNNAVSKLTAALSSLQSDMQRLTEQQNHLLKKKPAA-------STSKSWVIPASPR----TSTP 851
Cdd:PRK13335   31 EKIQSTKVDKVPTLK--AERLAMINITAGANSATTQAANTRQERTPKLEKAPntneektSASKIEKISQPKQeeqkSLNI 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47220029   852 ASTPVRTSREPtrNLNSASTSPSPshKLTTPTTPKSPQVQRRARSVPPKSPKHHQQSRplDVRP 915
Cdd:PRK13335  109 SATPAPKQEQS--QTTTESTTPKT--KVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQT--DMTP 166
 
Name Accession Description Interval E-value
CAMSAP_CKK smart01051
Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of ...
 1330-1441 6.17e-54

Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin.


Pssm-ID: 198119  Cd Length: 129  Bit Score: 184.48  E-value: 6.17e-54
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    1330 GPKLYKEPSFKSNKFIIHNAITRCCLAGKVNEPQKNKIVEEMEKSAANHFLILFRDASCQFRAVYTMNPETEEMHYSSCQ 1409
Cdd:smart01051    1 GPKLYKEPSAKSNRFIIHNALSHCCLAGKVNEPQKNKILEEMEKSEANHFLILFRDAKCQFRALYTLNPETEELVKLYGN 80

                            90       100       110
                    ....*....|....*....|....*....|....
gi 47220029    1410 DAAVL--LTTDCLQQTSSSDETFGDVKKDEQQET 1441
Cdd:smart01051   81 GPRVItsKMVESLYKYDSSRKQFTQIPSKTLSVS 114
CAMSAP_CKK pfam08683
Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of ...
 1331-1404 3.60e-44

Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin.


Pssm-ID: 462558  Cd Length: 119  Bit Score: 155.90  E-value: 3.60e-44
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47220029   1331 PKLYKEPSFKSNKFIIHNAITRCCLAGKVNEPQKNKIVEEMEKSAANHFLILFRDASCQFRAVYTMNPETEEMH 1404
Cdd:pfam08683    1 PKLFKKPSAKSNKKIIHNALSHCCLAGKVNEDQKNKILEELEKSESKHFLILFRDSGCQFRALYSYNPETEELV 74
CAMSAP_CH pfam11971
CAMSAP CH domain; This domain is the N-terminal CH domain from the CAMSAP proteins.
 228-308 4.57e-29

CAMSAP CH domain; This domain is the N-terminal CH domain from the CAMSAP proteins.


Pssm-ID: 432229  Cd Length: 85  Bit Score: 111.62  E-value: 4.57e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    228 QSRHKPVFPVV-NEVKDLSSGCAIAAVIHYYCPGLLRLEDICMKESMPVADSLYNLQFIREFCDSCLK-SCCHLALEDML 305
Cdd:pfam11971    3 SQRSLPLSPPVeDLLRDLSDGCALAALIHFYCPQLIDLEDICLKESMSLADSLYNIQLLQEFCQRHLGnRCCHLTLEDLL 82


                   ...
gi 47220029    306 YIP 308
Cdd:pfam11971   83 YAR 85
CAMSAP_CC1 pfam17095
Spectrin-binding region of Ca2+-Calmodulin; CAMSAP_CC1 is the conserved region on ...
 653-710 1.21e-21

Spectrin-binding region of Ca2+-Calmodulin; CAMSAP_CC1 is the conserved region on calmodulin-regulated spectrin-associated proteins in eukaryotes that binds spectrin. CAMSAPs are vertebrate microtubule-binding proteins, representatives of a family of cytoskeletal proteins that arose in animals. This conserved CC1 region binds to both spectrin and Ca2+/calmodulin in vitro, although the binding of Ca2+/calmodulin inhibited the binding of spectrin. CC1 appears to be a functional region of CAMSAP1 that links spectrin-binding to neurite outgrowth.


Pssm-ID: 465344 [Multi-domain]  Cd Length: 59  Bit Score: 89.67  E-value: 1.21e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 47220029    653 KSEESPSNSPQLN-DMSELGVRLEEKRRAIEAQKKRIEAIFAKHRQRVGKSAFRQLKKE 710
Cdd:pfam17095    1 PGDDSPSASPELAsELSQLRLKLEEKRRAIEQQKKRMEAAFARQRQKLGKAAFLQVVKK 59
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
783-915 1.08e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 46.27  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029   783 EKVSGTAGQKTAPLGdyNNAVSKLTAALSSLQSDMQRLTEQQNHLLKKKPAA-------STSKSWVIPASPR----TSTP 851
Cdd:PRK13335   31 EKIQSTKVDKVPTLK--AERLAMINITAGANSATTQAANTRQERTPKLEKAPntneektSASKIEKISQPKQeeqkSLNI 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47220029   852 ASTPVRTSREPtrNLNSASTSPSPshKLTTPTTPKSPQVQRRARSVPPKSPKHHQQSRplDVRP 915
Cdd:PRK13335  109 SATPAPKQEQS--QTTTESTTPKT--KVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQT--DMTP 166
CytochromB561_N pfam09786
Cytochrome B561, N terminal; Members of this family are found in the N terminal region of ...
 799-942 1.57e-03

Cytochrome B561, N terminal; Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins.


Pssm-ID: 462899  Cd Length: 579  Bit Score: 42.89  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    799 YNNAVSKLTAALSSLQSDMQRLTEQQNHLLKKKPAAStskSWVIPASPRTSTPASTPVrtsreptrnlnSASTSPSPSHK 878
Cdd:pfam09786   83 FKYLFAVQSKSPSKGTKTPSRLTNQQLGLLGLKPNDS---SFVTTHRKKPPKSKSSPQ-----------SPSPVLVPLHQ 148

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47220029    879 LTTPTTPKSPQVQRRARSVPPKSPKHHQQSRPLDVRPPTYSRVITAPQNVDRIPHLRR-INPWQS 942
Cdd:pfam09786  149 SVSPSSSESRKGGDKSPAGSGKKLRSFSTSSKSPASPSVYLRGSPVPLNSSPLPSDRNyENSVQS 213
 
Name Accession Description Interval E-value
CAMSAP_CKK smart01051
Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of ...
 1330-1441 6.17e-54

Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin.


Pssm-ID: 198119  Cd Length: 129  Bit Score: 184.48  E-value: 6.17e-54
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    1330 GPKLYKEPSFKSNKFIIHNAITRCCLAGKVNEPQKNKIVEEMEKSAANHFLILFRDASCQFRAVYTMNPETEEMHYSSCQ 1409
Cdd:smart01051    1 GPKLYKEPSAKSNRFIIHNALSHCCLAGKVNEPQKNKILEEMEKSEANHFLILFRDAKCQFRALYTLNPETEELVKLYGN 80

                            90       100       110
                    ....*....|....*....|....*....|....
gi 47220029    1410 DAAVL--LTTDCLQQTSSSDETFGDVKKDEQQET 1441
Cdd:smart01051   81 GPRVItsKMVESLYKYDSSRKQFTQIPSKTLSVS 114
CAMSAP_CKK pfam08683
Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of ...
 1331-1404 3.60e-44

Microtubule-binding calmodulin-regulated spectrin-associated; This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin.


Pssm-ID: 462558  Cd Length: 119  Bit Score: 155.90  E-value: 3.60e-44
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47220029   1331 PKLYKEPSFKSNKFIIHNAITRCCLAGKVNEPQKNKIVEEMEKSAANHFLILFRDASCQFRAVYTMNPETEEMH 1404
Cdd:pfam08683    1 PKLFKKPSAKSNKKIIHNALSHCCLAGKVNEDQKNKILEELEKSESKHFLILFRDSGCQFRALYSYNPETEELV 74
CAMSAP_CH pfam11971
CAMSAP CH domain; This domain is the N-terminal CH domain from the CAMSAP proteins.
 228-308 4.57e-29

CAMSAP CH domain; This domain is the N-terminal CH domain from the CAMSAP proteins.


Pssm-ID: 432229  Cd Length: 85  Bit Score: 111.62  E-value: 4.57e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    228 QSRHKPVFPVV-NEVKDLSSGCAIAAVIHYYCPGLLRLEDICMKESMPVADSLYNLQFIREFCDSCLK-SCCHLALEDML 305
Cdd:pfam11971    3 SQRSLPLSPPVeDLLRDLSDGCALAALIHFYCPQLIDLEDICLKESMSLADSLYNIQLLQEFCQRHLGnRCCHLTLEDLL 82


                   ...
gi 47220029    306 YIP 308
Cdd:pfam11971   83 YAR 85
CAMSAP_CC1 pfam17095
Spectrin-binding region of Ca2+-Calmodulin; CAMSAP_CC1 is the conserved region on ...
 653-710 1.21e-21

Spectrin-binding region of Ca2+-Calmodulin; CAMSAP_CC1 is the conserved region on calmodulin-regulated spectrin-associated proteins in eukaryotes that binds spectrin. CAMSAPs are vertebrate microtubule-binding proteins, representatives of a family of cytoskeletal proteins that arose in animals. This conserved CC1 region binds to both spectrin and Ca2+/calmodulin in vitro, although the binding of Ca2+/calmodulin inhibited the binding of spectrin. CC1 appears to be a functional region of CAMSAP1 that links spectrin-binding to neurite outgrowth.


Pssm-ID: 465344 [Multi-domain]  Cd Length: 59  Bit Score: 89.67  E-value: 1.21e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 47220029    653 KSEESPSNSPQLN-DMSELGVRLEEKRRAIEAQKKRIEAIFAKHRQRVGKSAFRQLKKE 710
Cdd:pfam17095    1 PGDDSPSASPELAsELSQLRLKLEEKRRAIEQQKKRMEAAFARQRQKLGKAAFLQVVKK 59
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
783-915 1.08e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 46.27  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029   783 EKVSGTAGQKTAPLGdyNNAVSKLTAALSSLQSDMQRLTEQQNHLLKKKPAA-------STSKSWVIPASPR----TSTP 851
Cdd:PRK13335   31 EKIQSTKVDKVPTLK--AERLAMINITAGANSATTQAANTRQERTPKLEKAPntneektSASKIEKISQPKQeeqkSLNI 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47220029   852 ASTPVRTSREPtrNLNSASTSPSPshKLTTPTTPKSPQVQRRARSVPPKSPKHHQQSRplDVRP 915
Cdd:PRK13335  109 SATPAPKQEQS--QTTTESTTPKT--KVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQT--DMTP 166
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 766-916 1.70e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 46.22  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029   766 GNVKEEREPnKQVGNFNEKVSGTAGQKTAPLGDYNNavSKLTaalsslqsdmqrlteqqnhLLKKKPAA-STSKSWVIPA 844
Cdd:PTZ00449  535 EDSKESDEP-KEGGKPGETKEGEVGKKPGPAKEHKP--SKIP-------------------TLSKKPEFpKDPKHPKDPE 592

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47220029   845 SPRTSTPASTPVRTSREPTRNLNSASTSPSPSHKLTTPTTPKSPQVQRRARSvP--PKSPKHHQQSR-PLDVRPP 916
Cdd:PTZ00449  593 EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSS-PerPEGPKIIKSPKpPKSPKPP 666
CytochromB561_N pfam09786
Cytochrome B561, N terminal; Members of this family are found in the N terminal region of ...
 799-942 1.57e-03

Cytochrome B561, N terminal; Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins.


Pssm-ID: 462899  Cd Length: 579  Bit Score: 42.89  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029    799 YNNAVSKLTAALSSLQSDMQRLTEQQNHLLKKKPAAStskSWVIPASPRTSTPASTPVrtsreptrnlnSASTSPSPSHK 878
Cdd:pfam09786   83 FKYLFAVQSKSPSKGTKTPSRLTNQQLGLLGLKPNDS---SFVTTHRKKPPKSKSSPQ-----------SPSPVLVPLHQ 148

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47220029    879 LTTPTTPKSPQVQRRARSVPPKSPKHHQQSRPLDVRPPTYSRVITAPQNVDRIPHLRR-INPWQS 942
Cdd:pfam09786  149 SVSPSSSESRKGGDKSPAGSGKKLRSFSTSSKSPASPSVYLRGSPVPLNSSPLPSDRNyENSVQS 213
PHA03247 PHA03247
large tegument protein UL36; Provisional
 802-917 5.82e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 5.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47220029   802 AVSKLTAALSSLQSDmqrlTEQQNHLLKKKPAASTSKSWVIPASPRTSTPASTPVRTSR-----EPTRNLNSA------- 869
Cdd:PHA03247 2787 AVASLSESRESLPSP----WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPppgppPPSLPLGGSvapggdv 2862

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 47220029   870 STSPSPSHKLTTPTTPKSPQVQRRARSVPPKSPKHHQQSRPLDVRPPT 917
Cdd:PHA03247 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQ 2910
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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