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Conserved domains on  [gi|2136238764|emb|CAG5857023|]
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Tn5252, Orf 10 protein [Streptococcus pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tn5252_Orf10 NF040666
SAG1252 family conjugative relaxosome accessory protein; SAG1252, a member of the Tn5252 ORF10 ...
 5-118 1.38e-60

SAG1252 family conjugative relaxosome accessory protein; SAG1252, a member of the Tn5252 ORF10 family, occurs in mobile elements from a class associated with the movement of bacteriocins and antibiotic resistance proteins in Streptococcus. This HMM excludes related MobC proteins, such as the adjacent SAG1251, a homolog over the short length of these small proteins except for a small central region recognized by Pfam model PF05713 (MobC).


:

Pssm-ID: 468632  Cd Length: 114  Bit Score: 181.02  E-value: 1.38e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2136238764   5 YRDIRKEVNLTADELKQIEKMMEVDNYRHFSPFVRDKILMTDDKQLAAKEWFSLWQSQKFEQISRDVHLVLIIARENHQV 84
Cdd:NF040666    1 YRDIRKEFNLTAEEEEQIQELMKEQGYEQFSPFLRQKLLKLDEQKQSLEEWFSLWQSQKLEQISRDVHEVLVLAESNHQV 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2136238764  85 TQEHVSILLTCVQELIAEVNQVQSLSRGFREKYM 118
Cdd:NF040666   81 TQEHVSILLTCVQELIAEVENTIPLSQDFRDKYM 114
 
Name Accession Description Interval E-value
Tn5252_Orf10 NF040666
SAG1252 family conjugative relaxosome accessory protein; SAG1252, a member of the Tn5252 ORF10 ...
 5-118 1.38e-60

SAG1252 family conjugative relaxosome accessory protein; SAG1252, a member of the Tn5252 ORF10 family, occurs in mobile elements from a class associated with the movement of bacteriocins and antibiotic resistance proteins in Streptococcus. This HMM excludes related MobC proteins, such as the adjacent SAG1251, a homolog over the short length of these small proteins except for a small central region recognized by Pfam model PF05713 (MobC).


Pssm-ID: 468632  Cd Length: 114  Bit Score: 181.02  E-value: 1.38e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2136238764   5 YRDIRKEVNLTADELKQIEKMMEVDNYRHFSPFVRDKILMTDDKQLAAKEWFSLWQSQKFEQISRDVHLVLIIARENHQV 84
Cdd:NF040666    1 YRDIRKEFNLTAEEEEQIQELMKEQGYEQFSPFLRQKLLKLDEQKQSLEEWFSLWQSQKLEQISRDVHEVLVLAESNHQV 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2136238764  85 TQEHVSILLTCVQELIAEVNQVQSLSRGFREKYM 118
Cdd:NF040666   81 TQEHVSILLTCVQELIAEVENTIPLSQDFRDKYM 114
 
Name Accession Description Interval E-value
Tn5252_Orf10 NF040666
SAG1252 family conjugative relaxosome accessory protein; SAG1252, a member of the Tn5252 ORF10 ...
 5-118 1.38e-60

SAG1252 family conjugative relaxosome accessory protein; SAG1252, a member of the Tn5252 ORF10 family, occurs in mobile elements from a class associated with the movement of bacteriocins and antibiotic resistance proteins in Streptococcus. This HMM excludes related MobC proteins, such as the adjacent SAG1251, a homolog over the short length of these small proteins except for a small central region recognized by Pfam model PF05713 (MobC).


Pssm-ID: 468632  Cd Length: 114  Bit Score: 181.02  E-value: 1.38e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2136238764   5 YRDIRKEVNLTADELKQIEKMMEVDNYRHFSPFVRDKILMTDDKQLAAKEWFSLWQSQKFEQISRDVHLVLIIARENHQV 84
Cdd:NF040666    1 YRDIRKEFNLTAEEEEQIQELMKEQGYEQFSPFLRQKLLKLDEQKQSLEEWFSLWQSQKLEQISRDVHEVLVLAESNHQV 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2136238764  85 TQEHVSILLTCVQELIAEVNQVQSLSRGFREKYM 118
Cdd:NF040666   81 TQEHVSILLTCVQELIAEVENTIPLSQDFRDKYM 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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