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Conserved domains on  [gi|2261231204|emb|CAH2572228|]
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hypothetical protein PRNO82_01630 [Planktothrix rubescens]

Protein Classification

cytochrome b/b6 domain-containing protein( domain architecture ID 10472844)

uncharacterized cytochrome b/b6 domain-containing protein such as Salmonella enterica thiosulfate reductase cytochrome B subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ni_hydr_CYTB pfam01292
Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in ...
 8-166 5.92e-05

Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in Pfam: PF03188.


:

Pssm-ID: 426183  Cd Length: 180  Bit Score: 42.13  E-value: 5.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2261231204   8 QPLFLRVSHALNAFLVLGAFITGFLVYDSYDRRFGGLglteekrSLIDIHGTFGFFLLFVYFVFAVYSLIAERKKL---- 83
Cdd:pfam01292   2 YSLPVRLLHWLNALLVILLLLTGLLIAFPEPLALLGA-------AGRNLHKSLGLVLLALLLLRLLWRPKARFPRSdllr 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2261231204  84 --IQGNTLQTLTKINKPAWWYTL---LRISNTLALIAVALSVISG-----KFQEEDWLPNGEFNHPWYFVH-LIAWVIIL 152
Cdd:pfam01292  75 feLLRYLYLLLRGPHPPPGKYNPgqkLALVHLLLYLLLILLPLTGlllyfPASASGFGVDGGLAELARLLHeLLAWALLA 154

                         170
                  ....*....|....
gi 2261231204 153 FsIMIHVLMAIKVG 166
Cdd:pfam01292 155 L-VVLHIYAALFHH 167
 
Name Accession Description Interval E-value
Ni_hydr_CYTB pfam01292
Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in ...
 8-166 5.92e-05

Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in Pfam: PF03188.


Pssm-ID: 426183  Cd Length: 180  Bit Score: 42.13  E-value: 5.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2261231204   8 QPLFLRVSHALNAFLVLGAFITGFLVYDSYDRRFGGLglteekrSLIDIHGTFGFFLLFVYFVFAVYSLIAERKKL---- 83
Cdd:pfam01292   2 YSLPVRLLHWLNALLVILLLLTGLLIAFPEPLALLGA-------AGRNLHKSLGLVLLALLLLRLLWRPKARFPRSdllr 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2261231204  84 --IQGNTLQTLTKINKPAWWYTL---LRISNTLALIAVALSVISG-----KFQEEDWLPNGEFNHPWYFVH-LIAWVIIL 152
Cdd:pfam01292  75 feLLRYLYLLLRGPHPPPGKYNPgqkLALVHLLLYLLLILLPLTGlllyfPASASGFGVDGGLAELARLLHeLLAWALLA 154

                         170
                  ....*....|....
gi 2261231204 153 FsIMIHVLMAIKVG 166
Cdd:pfam01292 155 L-VVLHIYAALFHH 167
 
Name Accession Description Interval E-value
Ni_hydr_CYTB pfam01292
Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in ...
 8-166 5.92e-05

Prokaryotic cytochrome b561; This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in Pfam: PF03188.


Pssm-ID: 426183  Cd Length: 180  Bit Score: 42.13  E-value: 5.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2261231204   8 QPLFLRVSHALNAFLVLGAFITGFLVYDSYDRRFGGLglteekrSLIDIHGTFGFFLLFVYFVFAVYSLIAERKKL---- 83
Cdd:pfam01292   2 YSLPVRLLHWLNALLVILLLLTGLLIAFPEPLALLGA-------AGRNLHKSLGLVLLALLLLRLLWRPKARFPRSdllr 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2261231204  84 --IQGNTLQTLTKINKPAWWYTL---LRISNTLALIAVALSVISG-----KFQEEDWLPNGEFNHPWYFVH-LIAWVIIL 152
Cdd:pfam01292  75 feLLRYLYLLLRGPHPPPGKYNPgqkLALVHLLLYLLLILLPLTGlllyfPASASGFGVDGGLAELARLLHeLLAWALLA 154

                         170
                  ....*....|....
gi 2261231204 153 FsIMIHVLMAIKVG 166
Cdd:pfam01292 155 L-VVLHIYAALFHH 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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