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Conserved domains on  [gi|2244495194|emb|CAH5931967|]
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hypothetical protein AI2903V1_5306 (plasmid) [Klebsiella pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS1 super family cl44371
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-88 3.46e-52

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


The actual alignment was detected with superfamily member pfam03400:

Pssm-ID: 281403  Cd Length: 131  Bit Score: 159.37  E-value: 3.46e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244495194   1 MPTLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGH 80
Cdd:pfam03400  44 DATCGELLALLSPFDIGILMSDDWGLYERELKGDKHLIGKIFTQRIERHNLNLRQHIARLARKSICFSKSVEIHDKVIGH 123


                  ....*...
gi 2244495194  81 YLNIKHYQ 88
Cdd:pfam03400 124 FIEIHHFQ 131
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-88 3.46e-52

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 159.37  E-value: 3.46e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244495194   1 MPTLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGH 80
Cdd:pfam03400  44 DATCGELLALLSPFDIGILMSDDWGLYERELKGDKHLIGKIFTQRIERHNLNLRQHIARLARKSICFSKSVEIHDKVIGH 123


                  ....*...
gi 2244495194  81 YLNIKHYQ 88
Cdd:pfam03400 124 FIEIHHFQ 131
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
3-88 7.56e-34

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 114.80  E-value: 7.56e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244495194   3 TLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYL 82
Cdd:COG1662   105 TARKLWEKLKPFEIAVIYTDGWKAYASLIPEKRHVVSKGYTNHIERNNLTLRHRLKRLVRKTICFSKSLEMHDKAIKLFF 184


                  ....*.
gi 2244495194  83 NIKHYQ 88
Cdd:COG1662   185 HYYNFG 190
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 3-63 8.00e-25

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 91.57  E-value: 8.00e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2244495194   3 TLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRK 63
Cdd:NF033558  139 TFRKLWALLKPFKIGFYCTDHWKVYAEFLPDEKHLVSKGETQRIERENLTLRHRLARLVRK 199
 
Name Accession Description Interval E-value
DDE_Tnp_IS1 pfam03400
IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This ...
 1-88 3.46e-52

IS1 transposase; Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.


Pssm-ID: 281403  Cd Length: 131  Bit Score: 159.37  E-value: 3.46e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244495194   1 MPTLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGH 80
Cdd:pfam03400  44 DATCGELLALLSPFDIGILMSDDWGLYERELKGDKHLIGKIFTQRIERHNLNLRQHIARLARKSICFSKSVEIHDKVIGH 123


                  ....*...
gi 2244495194  81 YLNIKHYQ 88
Cdd:pfam03400 124 FIEIHHFQ 131
InsB COG1662
Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];
3-88 7.56e-34

Transposase and inactivated derivatives, IS1 family [Mobilome: prophages, transposons];


Pssm-ID: 441268 [Multi-domain]  Cd Length: 193  Bit Score: 114.80  E-value: 7.56e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244495194   3 TLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYL 82
Cdd:COG1662   105 TARKLWEKLKPFEIAVIYTDGWKAYASLIPEKRHVVSKGYTNHIERNNLTLRHRLKRLVRKTICFSKSLEMHDKAIKLFF 184


                  ....*.
gi 2244495194  83 NIKHYQ 88
Cdd:COG1662   185 HYYNFG 190
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
 3-63 8.00e-25

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 91.57  E-value: 8.00e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2244495194   3 TLGRFMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRK 63
Cdd:NF033558  139 TFRKLWALLKPFKIGFYCTDHWKVYAEFLPDEKHLVSKGETQRIERENLTLRHRLARLVRK 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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