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Conserved domains on  [gi|2361034523|emb|CAI4700515|]
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CAS_1a_G0043690.mRNA.1.CDS.1 [Saccharomyces cerevisiae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF468 super family cl04477
Protein of unknown function (DUF468); These conserved ORFs probably are probably not ...
 11-94 5.36e-39

Protein of unknown function (DUF468); These conserved ORFs probably are probably not translated into protein [Personal communication, Val Wood].


The actual alignment was detected with superfamily member pfam04318:

Pssm-ID: 367903  Cd Length: 84  Bit Score: 124.76  E-value: 5.36e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2361034523 11 INGTCLSGLYPVPFTHKAHDYPHFNIYISFGDTKYCITALNTYVIPLLHHILTTQFIHTYVNITEKLPLKSPKHKNILLF 90
Cdd:pfam04318  1 MHGTCLSGLYPEPFTHKAHDYPHFNIYISFGGPKYCITALNTYVIPLFHHILSTQFIHTYFNIPKKSPLKSPKHKNILSF 80


                 ....
gi 2361034523 91 NNNT 94
Cdd:pfam04318 81 NDNK 84
 
Name Accession Description Interval E-value
DUF468 pfam04318
Protein of unknown function (DUF468); These conserved ORFs probably are probably not ...
 11-94 5.36e-39

Protein of unknown function (DUF468); These conserved ORFs probably are probably not translated into protein [Personal communication, Val Wood].


Pssm-ID: 367903  Cd Length: 84  Bit Score: 124.76  E-value: 5.36e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2361034523 11 INGTCLSGLYPVPFTHKAHDYPHFNIYISFGDTKYCITALNTYVIPLLHHILTTQFIHTYVNITEKLPLKSPKHKNILLF 90
Cdd:pfam04318  1 MHGTCLSGLYPEPFTHKAHDYPHFNIYISFGGPKYCITALNTYVIPLFHHILSTQFIHTYFNIPKKSPLKSPKHKNILSF 80


                 ....
gi 2361034523 91 NNNT 94
Cdd:pfam04318 81 NDNK 84
 
Name Accession Description Interval E-value
DUF468 pfam04318
Protein of unknown function (DUF468); These conserved ORFs probably are probably not ...
 11-94 5.36e-39

Protein of unknown function (DUF468); These conserved ORFs probably are probably not translated into protein [Personal communication, Val Wood].


Pssm-ID: 367903  Cd Length: 84  Bit Score: 124.76  E-value: 5.36e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2361034523 11 INGTCLSGLYPVPFTHKAHDYPHFNIYISFGDTKYCITALNTYVIPLLHHILTTQFIHTYVNITEKLPLKSPKHKNILLF 90
Cdd:pfam04318  1 MHGTCLSGLYPEPFTHKAHDYPHFNIYISFGGPKYCITALNTYVIPLFHHILSTQFIHTYFNIPKKSPLKSPKHKNILSF 80


                 ....
gi 2361034523 91 NNNT 94
Cdd:pfam04318 81 NDNK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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