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Conserved domains on  [gi|187021655|emb|CAP39172|]
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Protein CBG22620 [Caenorhabditis briggsae]

Protein Classification

DUF2700 domain-containing protein( domain architecture ID 10566881)

DUF2700 domain-containing protein similar to Caenorhabditis elegans protein C05B5.8

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2700 pfam10912
Protein of unknown function (DUF2700); This family of proteins with unknown function appears ...
 16-140 1.04e-26

Protein of unknown function (DUF2700); This family of proteins with unknown function appears to be restricted to Caenorhabditis elegans.


:

Pssm-ID: 371296  Cd Length: 136  Bit Score: 98.47  E-value: 1.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187021655   16 VVSFLGMLSAPSLLLVKPLSTTSHIASVITLAFNGCLFGGALKYNNKALKCCQNVLVCLIVFYFILLCLTPMTFSRFMAY 95
Cdd:pfam10912   1 VLAIFGIIRSGAQLLYSPDSWFTALFLFISLLLNLLLLFGALKNNEKALKWAQRVSFIALILAFLQFLIVPVIFASFVAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 187021655   96 GYDQFLRyepveDLANRLKRTVGDDEfshekarkEAEAKFILGLL 140
Cdd:pfam10912  81 GYADNLY-----NSTSIFPEIFGTQT--------SEEEMFVSGLL 112
 
Name Accession Description Interval E-value
DUF2700 pfam10912
Protein of unknown function (DUF2700); This family of proteins with unknown function appears ...
 16-140 1.04e-26

Protein of unknown function (DUF2700); This family of proteins with unknown function appears to be restricted to Caenorhabditis elegans.


Pssm-ID: 371296  Cd Length: 136  Bit Score: 98.47  E-value: 1.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187021655   16 VVSFLGMLSAPSLLLVKPLSTTSHIASVITLAFNGCLFGGALKYNNKALKCCQNVLVCLIVFYFILLCLTPMTFSRFMAY 95
Cdd:pfam10912   1 VLAIFGIIRSGAQLLYSPDSWFTALFLFISLLLNLLLLFGALKNNEKALKWAQRVSFIALILAFLQFLIVPVIFASFVAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 187021655   96 GYDQFLRyepveDLANRLKRTVGDDEfshekarkEAEAKFILGLL 140
Cdd:pfam10912  81 GYADNLY-----NSTSIFPEIFGTQT--------SEEEMFVSGLL 112
 
Name Accession Description Interval E-value
DUF2700 pfam10912
Protein of unknown function (DUF2700); This family of proteins with unknown function appears ...
 16-140 1.04e-26

Protein of unknown function (DUF2700); This family of proteins with unknown function appears to be restricted to Caenorhabditis elegans.


Pssm-ID: 371296  Cd Length: 136  Bit Score: 98.47  E-value: 1.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187021655   16 VVSFLGMLSAPSLLLVKPLSTTSHIASVITLAFNGCLFGGALKYNNKALKCCQNVLVCLIVFYFILLCLTPMTFSRFMAY 95
Cdd:pfam10912   1 VLAIFGIIRSGAQLLYSPDSWFTALFLFISLLLNLLLLFGALKNNEKALKWAQRVSFIALILAFLQFLIVPVIFASFVAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 187021655   96 GYDQFLRyepveDLANRLKRTVGDDEfshekarkEAEAKFILGLL 140
Cdd:pfam10912  81 GYADNLY-----NSTSIFPEIFGTQT--------SEEEMFVSGLL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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