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Conserved domains on  [gi|257338012|emb|CBC02486|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 774-1105 1.16e-38

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 156.96  E-value: 1.16e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  774 KFTKdLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEA 853
Cdd:PLN03218  427 RFAK-LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  854 NTITHNIVISGLVKAGNVDDALDLyYDLMSDRDFSP---------TAC----------------------------TYGP 896
Cdd:PLN03218  506 NVHTFGALIDGCARAGQVAKAFGA-YGIMRSKNVKPdrvvfnaliSACgqsgavdrafdvlaemkaethpidpdhiTVGA 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Cdd:PLN03218  585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSrGITPDLYTYNSLILNLGIAGMVEEAGKIYN 1056
Cdd:PLN03218  665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLS 743

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 257338012 1057 EIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Cdd:PLN03218  744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 212-631 4.21e-37

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 151.95  E-value: 4.21e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  212 RRMILEGFR-------PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Cdd:PLN03218  419 QRAVKEAFRfaklirnPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH--VPD 362
Cdd:PLN03218  499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpiDPD 578

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  363 VVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442
Cdd:PLN03218  579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Cdd:PLN03218  659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLL----------AGLG------KN 586
Cdd:PLN03218  739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITglclrrfekaCALGepvvsfDS 818

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 257338012  587 GKIQ-------EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Cdd:PLN03218  819 GRPQienkwtsWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 641-689 4.90e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 4.90e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   641 PDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVK 689
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgVKPNVYTYTILINGLCK 50
PPR_3 super family cl37870
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 176-236 3.15e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


The actual alignment was detected with superfamily member pfam13812:

Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 3.15e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257338012   176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKR 236
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 774-1105 1.16e-38

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 156.96  E-value: 1.16e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  774 KFTKdLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEA 853
Cdd:PLN03218  427 RFAK-LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  854 NTITHNIVISGLVKAGNVDDALDLyYDLMSDRDFSP---------TAC----------------------------TYGP 896
Cdd:PLN03218  506 NVHTFGALIDGCARAGQVAKAFGA-YGIMRSKNVKPdrvvfnaliSACgqsgavdrafdvlaemkaethpidpdhiTVGA 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Cdd:PLN03218  585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSrGITPDLYTYNSLILNLGIAGMVEEAGKIYN 1056
Cdd:PLN03218  665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLS 743

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 257338012 1057 EIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Cdd:PLN03218  744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 212-631 4.21e-37

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 151.95  E-value: 4.21e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  212 RRMILEGFR-------PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Cdd:PLN03218  419 QRAVKEAFRfaklirnPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH--VPD 362
Cdd:PLN03218  499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpiDPD 578

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  363 VVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442
Cdd:PLN03218  579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Cdd:PLN03218  659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLL----------AGLG------KN 586
Cdd:PLN03218  739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITglclrrfekaCALGepvvsfDS 818

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 257338012  587 GKIQ-------EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Cdd:PLN03218  819 GRPQienkwtsWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 571-620 3.18e-17

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 76.25  E-value: 3.18e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 994-1039 5.65e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 67.00  E-value: 5.65e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 257338012   994 PDVVCYNLIINGLGKSHRLEEALVLFNEMKtSRGITPDLYTYNSLI 1039
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMK-KRGVKPNVYTYTILI 45
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 641-689 4.90e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 4.90e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   641 PDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVK 689
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 504-538 6.59e-10

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 55.15  E-value: 6.59e-10
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   504 VTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 928-960 7.50e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 7.50e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   928 IYNILINGFGKAGEADAACALFKRMVKEGVRPD 960
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 470-597 2.19e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 2.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  470 ACNASLYSLAKA----GRDREAKQIFygLKDIGLVPDSVT-YNMMMKCYSKVGEIDEAIKLLSEMMENgcEPD-VIVVNS 543
Cdd:COG4783     2 ACAEALYALAQAlllaGDYDEAEALL--EKALELDPDNPEaFALLGEILLQLGDLDEAIVLLHEALEL--DPDePEARLN 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 257338012  544 LINTLYKADRVDEAWKMFMRMkeMKLKPTVVTYNTLLAGL-GKNGKIQEAIELFE 597
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKA--LKLDPEHPEAYLRLARAyRALGRPDEAIAALE 130
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 644-676 1.83e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   644 FTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPD 676
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERgIEPD 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 819-1058 2.77e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  819 DVATYNFLLDAYGKSGKIDELFELYKEMsthecEANTITHNIVISGL----VKAGNVDDALDLYYDLMSDRDFSPTACTY 894
Cdd:COG2956    41 TVEAHLALGNLYRRRGEYDRAIRIHQKL-----LERDPDRAEALLELaqdyLKAGLLDRAEELLEKLLELDPDDAEALRL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  895 gpLIDGLSKSGRLYEAKQLFEGMLDYGcrPNCA-IYNILINGFGKAGEADAACALFKRMVKegVRPD-LKTYSVLVDCLC 972
Cdd:COG2956   116 --LAEIYEQEGDWEKAIEVLERLLKLG--PENAhAYCELAELYLEQGDYDEAIEALEKALK--LDPDcARALLLLAELYL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  973 MVGRVDEGLHYFKELKEsgLNPDvvcYNLIINGLGKSH----RLEEALVLFNEMKTSRGITPDLYTYNSLILNLgiaGMV 1048
Cdd:COG2956   190 EQGDYEEAIAALERALE--QDPD---YLPALPRLAELYeklgDPEEALELLRKALELDPSDDLLLALADLLERK---EGL 261

                         250
                  ....*....|
gi 257338012 1049 EEAGKIYNEI 1058
Cdd:COG2956   262 EAALALLERQ 271
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 176-236 3.15e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 3.15e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257338012   176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKR 236
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 189-222 2.47e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.47e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   189 YSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPS 222
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 774-1105 1.16e-38

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 156.96  E-value: 1.16e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  774 KFTKdLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEA 853
Cdd:PLN03218  427 RFAK-LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  854 NTITHNIVISGLVKAGNVDDALDLyYDLMSDRDFSP---------TAC----------------------------TYGP 896
Cdd:PLN03218  506 NVHTFGALIDGCARAGQVAKAFGA-YGIMRSKNVKPdrvvfnaliSACgqsgavdrafdvlaemkaethpidpdhiTVGA 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Cdd:PLN03218  585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSrGITPDLYTYNSLILNLGIAGMVEEAGKIYN 1056
Cdd:PLN03218  665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLS 743

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 257338012 1057 EIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Cdd:PLN03218  744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 212-631 4.21e-37

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 151.95  E-value: 4.21e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  212 RRMILEGFR-------PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Cdd:PLN03218  419 QRAVKEAFRfaklirnPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH--VPD 362
Cdd:PLN03218  499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpiDPD 578

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  363 VVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442
Cdd:PLN03218  579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Cdd:PLN03218  659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLL----------AGLG------KN 586
Cdd:PLN03218  739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITglclrrfekaCALGepvvsfDS 818

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 257338012  587 GKIQ-------EAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Cdd:PLN03218  819 GRPQienkwtsWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLI 870
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 268-689 2.12e-33

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 140.01  E-value: 2.12e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  268 LGRAGKINEAYEILKRMDDEG-CGPDVVTYTVLIDAlCTARKldCAKEVFEKMKTGRHkPDRVTYITLLDRFSDNRDLDS 346
Cdd:PLN03218  380 LLRDGRIKDCIDLLEDMEKRGlLDMDKIYHAKFFKA-CKKQR--AVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDG 455

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  347 VKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMES 426
Cdd:PLN03218  456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  427 LGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK--TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504
Cdd:PLN03218  536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  505 TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG 584
Cdd:PLN03218  616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  585 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMC 664
Cdd:PLN03218  696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775

                         410       420
                  ....*....|....*....|....*.
gi 257338012  665 FFHQMKK-LVYPDFVtLCTLLPGVVK 689
Cdd:PLN03218  776 LLSQAKEdGIKPNLV-MCRCITGLCL 800
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 176-471 1.01e-29

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 128.07  E-value: 1.01e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK 255
Cdd:PLN03218  460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEG--CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYIT 333
Cdd:PLN03218  540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  334 LLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGI------------------- 394
Cdd:PLN03218  620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIklgtvsysslmgacsnakn 699

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  395 ----------------LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458
Cdd:PLN03218  700 wkkalelyediksiklRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779

                         330
                  ....*....|...
gi 257338012  459 MKTKGIAPNIVAC 471
Cdd:PLN03218  780 AKEDGIKPNLVMC 792
PLN03077 PLN03077
Protein ECB2; Provisional
 117-695 1.61e-29

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 126.89  E-value: 1.61e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  117 TTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFK----SLSVKGGLKQAPYALRKMREFGFVLNaysyN 192
Cdd:PLN03077   50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRlcewKRAVEEGSRVCSRALSSHPSLGVRLG----N 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  193 GLIHLLLKSRFCTEAMEVYRRMileGFRpSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG 272
Cdd:PLN03077  126 AMLSMFVRFGELVHAWYVFGKM---PER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTgrhkPDRVTYITLLDRFSDNRDLDSVKQFWS 352
Cdd:PLN03077  202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESlgvkPT 432
Cdd:PLN03077  278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KD 353

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  433 AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKC 512
Cdd:PLN03077  354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  513 YSKVGEIDEAIKLLSEMMENgcepDVIVVNSLINTLYKADRVDEAWKMFMRMKeMKLKPTVVTYNTLLAGLGKNGKIQEA 592
Cdd:PLN03077  434 YSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCG 508

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  593 IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLfkmmdMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL 672
Cdd:PLN03077  509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583

                         570       580
                  ....*....|....*....|....
gi 257338012  673 -VYPDFVTLCTLLPGVVKASLIED 695
Cdd:PLN03077  584 gVNPDEVTFISLLCACSRSGMVTQ 607
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 250-665 3.73e-28

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 121.90  E-value: 3.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  250 ETLGLKPNVytfTIC--IRVLGRAGKINEAYEILkRMDDEGCG--PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHK 325
Cdd:PLN03081   80 DTQIRKSGV---SLCsqIEKLVACGRHREALELF-EILEAGCPftLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  326 PDRVTYITLLDRFSDNRDLDSVKQFWSEM-EKDGhvpdvVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTL 404
Cdd:PLN03081  156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMpERNL-----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  405 I-----CGLLRVHRlddalELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKgiapNIVACNASLYSLA 479
Cdd:PLN03081  231 LrasagLGSARAGQ-----QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYA 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWK 559
Cdd:PLN03081  302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  560 MFMRMKemklKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDClCKNDEVTLALKMLFKMM--DM 637
Cdd:PLN03081  382 VFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMseNH 456

                         410       420
                  ....*....|....*....|....*...
gi 257338012  638 GCVPDVFTYNTIIFGLVKNGQVKEAMCF 665
Cdd:PLN03081  457 RIKPRAMHYACMIELLGREGLLDEAYAM 484
PLN03077 PLN03077
Protein ECB2; Provisional
 372-1039 3.98e-27

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 119.18  E-value: 3.98e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  372 ALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI--CGL-------LRVHRLDDAlelfgNMESLGVKPTAYTYIVFIDY 442
Cdd:PLN03077   60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFrlCEWkraveegSRVCSRALS-----SHPSLGVRLGNAMLSMFVRF 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  443 ygksGDSVSALETFEKMKTKgiapNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Cdd:PLN03077  135 ----GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKlkptVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602
Cdd:PLN03077  207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD----CISWNAMISGYFENGECLEGLELFFTMREL 282

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  603 GCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKklvYPDFVTLCT 682
Cdd:PLN03077  283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTA 359

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  683 LLPGVVKASLIEDAYKIitnflYNCADQPANLFWEDLIGSILAEAG----IDNAVSFSERLVANGIcrdgdsilvpiIRY 758
Cdd:PLN03077  360 MISGYEKNGLPDKALET-----YALMEQDNVSPDEITIASVLSACAclgdLDVGVKLHELAERKGL-----------ISY 423

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  759 sckhnnVSGARTLFEKFTKdlgvqpklptynlligglleADMIEIAQDVFlqvkstGCIP--DVATYNFLLDAYGKSGKI 836
Cdd:PLN03077  424 ------VVVANALIEMYSK--------------------CKCIDKALEVF------HNIPekDVISWTSIIAGLRLNNRC 471

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  837 DELFELYKEMSTHeCEANTITHNIVIS-----GLVKAGNVDDALDLYYDLMSDrDFSPTActygpLIDGLSKSGRLYEAK 911
Cdd:PLN03077  472 FEALIFFRQMLLT-LKPNSVTLIAALSacariGALMCGKEIHAHVLRTGIGFD-GFLPNA-----LLDLYVRCGRMNYAW 544

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  912 QLFEGmldygCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVdCLC-MVGRVDEGLHYFKELKES 990
Cdd:PLN03077  545 NQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACsRSGMVTQGLEYFHSMEEK 618

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|
gi 257338012  991 -GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKtsrgITPDLYTYNSLI 1039
Cdd:PLN03077  619 ySITPNLKHYACVVDLLGRAGKLTEAYNFINKMP----ITPDPAVWGALL 664
PLN03077 PLN03077
Protein ECB2; Provisional
 302-998 1.78e-26

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 117.26  E-value: 1.78e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE 381
Cdd:PLN03077   60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  382 AFDTLDVMRDQgilpNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY----------------------IVF 439
Cdd:PLN03077  140 AWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevhahVVR 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  440 IDY-------------YGKSGDSVSALETFEKMKTKgiapNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 506
Cdd:PLN03077  216 FGFeldvdvvnalitmYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  507 NMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMkEMKlkpTVVTYNTLLAGLGKN 586
Cdd:PLN03077  292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETK---DAVSWTAMISGYEKN 367

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  587 GKIQEAIELFEGMVQKGCPPNTITF-NTLFDCLCKNDEVT------LALKMLF--------KMMDM-------------- 637
Cdd:PLN03077  368 GLPDKALETYALMEQDNVSPDEITIaSVLSACACLGDLDVgvklheLAERKGLisyvvvanALIEMyskckcidkalevf 447

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  638 GCVP--DVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGvvkasliedaykiitnflynCAdqpanlf 715
Cdd:PLN03077  448 HNIPekDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA--------------------CA------- 500

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  716 wedligsilaeagidnavsfserlvANGICRDGDSIlvpiirysckHNNVSGARTLFEKFtkdlgvqpkLPtyNLLIGGL 795
Cdd:PLN03077  501 -------------------------RIGALMCGKEI----------HAHVLRTGIGFDGF---------LP--NALLDLY 534

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  796 LEADMIEIAQDVFlqvksTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875
Cdd:PLN03077  535 VRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  876 DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMldyGCRPNCAIYNILINGFG-----KAGEAdAACALFK 950
Cdd:PLN03077  610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRihrhvELGEL-AAQHIFE 685

                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....*...
gi 257338012  951 RMVKegvrpDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVC 998
Cdd:PLN03077  686 LDPN-----SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 460-958 1.46e-19

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 94.55  E-value: 1.46e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  460 KTKGIAPNIVACnASLYSLAKAGRDREAKQIFYGLK-DIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Cdd:PLN03081   80 DTQIRKSGVSLC-SQIEKLVACGRHREALELFEILEaGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  539 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLkptvVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNT----- 613
Cdd:PLN03081  159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVmlras 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  614 -----------LFDC-----LCKNDEVTLALKMLF----KMMDMGCVPD------VFTYNTIIFGLVKNGQVKEAMCFFH 667
Cdd:PLN03081  235 aglgsaragqqLHCCvlktgVVGDTFVSCALIDMYskcgDIEDARCVFDgmpektTVAWNSMLAGYALHGYSEEALCLYY 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  668 QMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKiitnflyncadqpanlfwedligsilAEAGidnavsfserLVANGICR 746
Cdd:PLN03081  315 EMRDSgVSIDQFTFSIMIRIFSRLALLEHAKQ--------------------------AHAG----------LIRTGFPL 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  747 D--GDSILVPIIrysCKHNNVSGARTLFEKFTKDlgvqpKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYN 824
Cdd:PLN03081  359 DivANTALVDLY---SKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  825 FLLDAYGKSGKIDELFELYKEMS-THECEANTITHNIVISGLVKAGNVDDAldlyYDLMSDRDFSPTACTYGPLIDGLSK 903
Cdd:PLN03081  431 AVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLGREGLLDEA----YAMIRRAPFKPTVNMWAALLTACRI 506

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 257338012  904 SGRLYEAKQLFEGMldYGCRP-NCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958
Cdd:PLN03081  507 HKNLELGRLAAEKL--YGMGPeKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 132-432 2.28e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.56  E-value: 2.28e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  132 GKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVY 211
Cdd:PLN03218  486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  212 RRMILEG--FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK--PNVYTftICIRVLGRAGKINEAYEILKRMDDE 287
Cdd:PLN03218  566 AEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKgtPEVYT--IAVNSCSQKGDWDFALSIYDDMKKK 643

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  288 GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367
Cdd:PLN03218  644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257338012  368 ILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Cdd:PLN03218  724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 207-420 8.62e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 92.63  E-value: 8.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDD 286
Cdd:PLN03218  598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  287 EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTF 366
Cdd:PLN03218  678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 257338012  367 TILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRvhRLDDALEL 420
Cdd:PLN03218  758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACAL 809
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 587-1099 1.99e-18

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 90.70  E-value: 1.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  587 GKIQEAIELFEGMvQKGCP--PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMC 664
Cdd:PLN03081  101 GRHREALELFEIL-EAGCPftLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  665 FFHQMkklvyPD--FVTLCTLLPGVVKASLIEDAYKIItnflyncadqpaNLFWEDLigsilAEAGIDNAVSFSERLVAN 742
Cdd:PLN03081  180 LFDEM-----PErnLASWGTIIGGLVDAGNYREAFALF------------REMWEDG-----SDAEPRTFVVMLRASAGL 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  743 GICRDGDSILVPIIRYS-CKHNNVSGArtLFEKFTKdlgvqpklptynlligglleADMIEIAQDVFlqvkstGCIPDVA 821
Cdd:PLN03081  238 GSARAGQQLHCCVLKTGvVGDTFVSCA--LIDMYSK--------------------CGDIEDARCVF------DGMPEKT 289

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  822 T--YNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSdRDFSPTACTYGPLID 899
Cdd:PLN03081  290 TvaWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVD 368

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  900 GLSKSGRLYEAKQLFEGMldygCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 979
Cdd:PLN03081  369 LYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  980 GLHYFKELKES-GLNPDVVCYNLIINGLGKSHRLEEALVLFNE--MKTSRGITPDLYTYNSLILNLGIAGMVEEagKIYn 1056
Cdd:PLN03081  445 GWEIFQSMSENhRIKPRAMHYACMIELLGREGLLDEAYAMIRRapFKPTVNMWAALLTACRIHKNLELGRLAAE--KLY- 521

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....
gi 257338012 1057 eiqraGLEP-NVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFS 1099
Cdd:PLN03081  522 -----GMGPeKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
PLN03077 PLN03077
Protein ECB2; Provisional
 577-1101 3.45e-18

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 90.29  E-value: 3.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDcLCKNDE----------------VTLALKMLFKMMDM--- 637
Cdd:PLN03077   55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRaveegsrvcsralsshPSLGVRLGNAMLSMfvr 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  638 -----------GCVP--DVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLctllPGVvkasliedaykiitnf 703
Cdd:PLN03077  134 fgelvhawyvfGKMPerDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAgVRPDVYTF----PCV---------------- 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  704 LYNCADQPanlfweDLigsilaeagidnavsfserlvangicRDGDSILVPIIRYSckhnnvsgartlfekFTKDLGVqp 783
Cdd:PLN03077  194 LRTCGGIP------DL--------------------------ARGREVHAHVVRFG---------------FELDVDV-- 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  784 klptYNLLIGGLLEADMIEIAQDVFLQVKSTGCIpdvaTYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVIS 863
Cdd:PLN03077  225 ----VNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  864 GLVKAGNVDDALDLYyDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMldyGCRpNCAIYNILINGFGKAGEAD 943
Cdd:PLN03077  297 ACELLGDERLGREMH-GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM---ETK-DAVSWTAMISGYEKNGLPD 371

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  944 AACALFKRMVKEGVRPDLKTY-SVLVDCLCMvGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022
Cdd:PLN03077  372 KALETYALMEQDNVSPDEITIaSVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012 1023 KTSrgitpDLYTYNSLILNLGIAGMVEEAgKIYNEIQRAGLEPNVFTFNALIR-----GYSLSGKPEHAYAVYQTMVTGG 1097
Cdd:PLN03077  451 PEK-----DVISWTSIIAGLRLNNRCFEA-LIFFRQMLLTLKPNSVTLIAALSacariGALMCGKEIHAHVLRTGIGFDG 524


                  ....
gi 257338012 1098 FSPN 1101
Cdd:PLN03077  525 FLPN 528
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 571-620 3.18e-17

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 76.25  E-value: 3.18e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCK 620
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 768-1105 5.10e-17

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 86.46  E-value: 5.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  768 ARTLFE----KFTKDLGVQpklpTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELY 843
Cdd:PLN03081  106 ALELFEileaGCPFTLPAS----TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  844 KEMSthecEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTAcTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR 923
Cdd:PLN03081  182 DEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  924 PNCAIYNILINGFGKAGEADAACALFKRMVKEGVrpdlKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLII 1003
Cdd:PLN03081  257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012 1004 NGLGKSHRLEEALVLFNEMkTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAglepNVFTFNALIRGYSLSGKP 1083
Cdd:PLN03081  333 RIFSRLALLEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG 407

                         330       340
                  ....*....|....*....|..
gi 257338012 1084 EHAYAVYQTMVTGGFSPNTGTY 1105
Cdd:PLN03081  408 TKAVEMFERMIAEGVAPNHVTF 429
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 994-1039 5.65e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 67.00  E-value: 5.65e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 257338012   994 PDVVCYNLIINGLGKSHRLEEALVLFNEMKtSRGITPDLYTYNSLI 1039
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMK-KRGVKPNVYTYTILI 45
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 361-410 1.97e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.46  E-value: 1.97e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 501-550 5.08e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 64.31  E-value: 5.08e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   501 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 924-972 2.24e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.38  E-value: 2.24e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 257338012   924 PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLC 972
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 256-304 3.16e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.00  E-value: 3.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 257338012   256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALC 304
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03077 PLN03077
Protein ECB2; Provisional
 824-1104 3.25e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 71.03  E-value: 3.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  824 NFLLDAYGKSGKIDELFELYKEMSthecEANTITHNIVISGLVKAGNVDDALDLYYDLMSdRDFSPTACTYGPLIDGLSK 903
Cdd:PLN03077  125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGG 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  904 SGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMvkegVRPDLKTYSVLVDCLCMVGRVDEGLHY 983
Cdd:PLN03077  200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLEL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  984 FKELKESGLNPDVVCYNLIIN--GLGKSHRLEEALvlfNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Cdd:PLN03077  276 FFTMRELSVDPDLMTITSVISacELLGDERLGREM---HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 257338012 1062 glepNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGT 1104
Cdd:PLN03077  353 ----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 606-655 5.46e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 61.23  E-value: 5.46e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   606 PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVK 655
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 536-585 1.25e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.45  E-value: 1.25e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   536 PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK 585
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 818-867 1.75e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.07  E-value: 1.75e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVK 867
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 178-321 4.69e-11

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 63.57  E-value: 4.69e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   178 KMREFGFVLNAYSYNGLIHLLLKSRFCTEAM---------EVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE 248
Cdd:pfam17177   36 AAKAEGVRLAQYHYNVLLYLCSKAADATDLKpqlaadrgfEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKE 115

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257338012   249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKT 321
Cdd:pfam17177  116 MEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRD 188
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 326-375 5.32e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.53  E-value: 5.32e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 396-441 7.86e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.14  E-value: 7.86e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 257338012   396 PNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFID 441
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 1030-1077 1.70e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.70e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 257338012  1030 PDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 183-464 1.71e-10

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 65.28  E-value: 1.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  183 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMIlegfRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFT 262
Cdd:PLN03081  254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  263 ICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMktgrhkPDR--VTYITLLDRFSD 340
Cdd:PLN03081  330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PRKnlISWNALIAGYGN 403

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  341 N-RDLDSVKQFwSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVM-RDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Cdd:PLN03081  404 HgRGTKAVEMF-ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIKPRAMHYACMIELLGREGLLDEAY 482

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 257338012  419 ELF----------------------GNME--------SLGVKPTAY-TYIVFIDYYGKSGDSVSALETFEKMKTKGI 464
Cdd:PLN03081  483 AMIrrapfkptvnmwaalltacrihKNLElgrlaaekLYGMGPEKLnNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 641-689 4.90e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 4.90e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   641 PDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVK 689
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 504-538 6.59e-10

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 55.15  E-value: 6.59e-10
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   504 VTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 291-336 6.96e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.45  E-value: 6.96e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 257338012   291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 637-670 1.17e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 54.27  E-value: 1.17e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   637 MGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 205-335 2.09e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 58.56  E-value: 2.09e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   205 TEAMEVYRRMILEGFRPSLQTYSSLM---------VGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKIN 275
Cdd:pfam17177   28 TGALALYDAAKAEGVRLAQYHYNVLLylcskaadaTDLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGD 107

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   276 EAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLL 335
Cdd:pfam17177  108 LAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALL 167
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 245-302 2.64e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 54.29  E-value: 2.64e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 257338012   245 LLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 302
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 287-320 4.47e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 52.73  E-value: 4.47e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   287 EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK 320
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 867-994 6.03e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 57.41  E-value: 6.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   867 KAGNVDDALDLYyDLMSDRDFSPTACTYGPLIDGLSKSG---------RLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Cdd:pfam17177   23 KHADATGALALY-DAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVARLAA 101

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 257338012   938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994
Cdd:pfam17177  102 AKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 357-390 7.51e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 51.96  E-value: 7.51e-09
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   357 DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR 390
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 889-938 2.00e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.21  E-value: 2.00e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   889 PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 569-600 5.64e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.65  E-value: 5.64e-08
                           10        20        30
                   ....*....|....*....|....*....|..
gi 257338012   569 LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMV 600
Cdd:pfam12854    3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 854-903 5.99e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 5.99e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   854 NTITHNIVISGLVKAGNVDDALDLyYDLMSDRDFSPTACTYGPLIDGLSK 903
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKL-FNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 574-608 7.14e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 49.38  E-value: 7.14e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNT 608
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 524-586 8.80e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 50.05  E-value: 8.80e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257338012   524 KLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKN 586
Cdd:pfam13812    1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 959-1008 1.06e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.28  E-value: 1.06e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   959 PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGK 1008
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 991-1023 1.22e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.50  E-value: 1.22e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   991 GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMK 1023
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 498-529 1.62e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.11  E-value: 1.62e-07
                           10        20        30
                   ....*....|....*....|....*....|..
gi 257338012   498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 221-270 1.69e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.69e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   221 PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGR 270
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 280-341 1.87e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 48.89  E-value: 1.87e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 257338012   280 ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN 341
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 386-445 4.61e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 47.74  E-value: 4.61e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGK 445
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 921-953 5.06e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.96  E-value: 5.06e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   921 GCRPNCAIYNILINGFGKAGEADAACALFKRMV 953
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 1065-1105 5.23e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 5.23e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 257338012  1065 PNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTY 41
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 504-534 5.37e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 46.69  E-value: 5.37e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 257338012   504 VTYNMMMKCYSKVGEIDEAIKLLSEMMENGC 534
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 928-960 7.50e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 7.50e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   928 IYNILINGFGKAGEADAACALFKRMVKEGVRPD 960
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 787-832 8.53e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 8.53e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 257338012   787 TYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGK 832
Cdd:pfam13041    5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 417-579 9.11e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 50.86  E-value: 9.11e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   417 ALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS---------ALETFEKMKTKGIAPNiVACNASLYSLAKAGRDRE- 486
Cdd:pfam17177   30 ALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDlkpqlaadrGFEVFEAMKAQGVSPN-EATYTAVARLAAAKGDGDl 108

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   487 AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKE 566
Cdd:pfam17177  109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRD 188

                          170
                   ....*....|...
gi 257338012   567 MKLKPTVVTYNTL 579
Cdd:pfam17177  189 AVRQVSESTAGVL 201
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 574-604 9.95e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.92  E-value: 9.95e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 257338012   574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGC 604
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 559-614 1.44e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.58  E-value: 1.44e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 257338012   559 KMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Cdd:pfam13812    1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAI 56
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 420-473 1.54e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.58  E-value: 1.54e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 257338012   420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNA 55
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 393-425 1.84e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 45.41  E-value: 1.84e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   393 GILPNLHTYNTLICGLLRVHRLDDALELFGNME 425
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 609-643 2.04e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 45.14  E-value: 2.04e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDV 643
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 470-597 2.19e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 2.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  470 ACNASLYSLAKA----GRDREAKQIFygLKDIGLVPDSVT-YNMMMKCYSKVGEIDEAIKLLSEMMENgcEPD-VIVVNS 543
Cdd:COG4783     2 ACAEALYALAQAlllaGDYDEAEALL--EKALELDPDNPEaFALLGEILLQLGDLDEAIVLLHEALEL--DPDePEARLN 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 257338012  544 LINTLYKADRVDEAWKMFMRMkeMKLKPTVVTYNTLLAGL-GKNGKIQEAIELFE 597
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKA--LKLDPEHPEAYLRLARAyRALGRPDEAIAALE 130
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 353-405 2.64e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.81  E-value: 2.64e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 257338012   353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI 405
Cdd:pfam13812    5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 307-432 3.35e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 49.32  E-value: 3.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   307 RKLD-CAK--------EVFEKMKT-----GRHKPDRVTYI----TLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTI 368
Cdd:pfam17177   16 FQLDkCSKhadatgalALYDAAKAegvrlAQYHYNVLLYLcskaADATDLKPQLAADRGFEVFEAMKAQGVSPNEATYTA 95

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257338012   369 LVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Cdd:pfam17177   96 VARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELE 159
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 445-580 4.22e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 48.93  E-value: 4.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK---------QIFYGLKDIGLVPDSVTYNMMMKCYSK 515
Cdd:pfam17177   23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDLKpqlaadrgfEVFEAMKAQGVSPNEATYTAVARLAAA 102

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257338012   516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLL 580
Cdd:pfam17177  103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALL 167
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 815-847 4.37e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 44.26  E-value: 4.37e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMS 847
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 399-433 5.22e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 5.22e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 1017-1077 7.25e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.66  E-value: 7.25e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257338012  1017 VLFNEMKtSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Cdd:pfam13812    1 SILREMV-RDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 364-397 7.89e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.60  E-value: 7.89e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 997-1031 9.32e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 9.32e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   997 VCYNLIINGLGKSHRLEEALVLFNEMKtSRGITPD 1031
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMK-ERGIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 253-284 1.01e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 43.10  E-value: 1.01e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 257338012   253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRM 284
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 963-996 1.43e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 1.43e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   963 TYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDV 996
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 602-634 1.49e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 1.49e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   602 KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 532-565 1.56e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.72  E-value: 1.56e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   532 NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 259-293 2.10e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.44  E-value: 2.10e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   259 YTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV 293
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 456-515 2.24e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.12  E-value: 2.24e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   456 FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 777-832 3.56e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.73  E-value: 3.56e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 257338012   777 KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGK 832
Cdd:pfam13812    7 VRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 892-926 4.85e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.29  E-value: 4.85e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   892 CTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNC 926
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 928-957 5.12e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.30  E-value: 5.12e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 257338012   928 IYNILINGFGKAGEADAACALFKRMVKEGV 957
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 490-547 5.81e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.96  E-value: 5.81e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 257338012   490 IFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINT 547
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 431-469 7.51e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 7.51e-05
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 257338012   431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIV 469
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVY 39
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 948-1008 8.96e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.57  E-value: 8.96e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257338012   948 LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGK 1008
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 501-741 1.26e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  501 PDSV-TYNMMMKCYSKVGEIDEAIKLLSEMMENgcEPD-VIVVNSLINTLYKADRVDEAWKMFMRMkeMKLKPTVVTYNT 578
Cdd:COG2956    39 PETVeAHLALGNLYRRRGEYDRAIRIHQKLLER--DPDrAEALLELAQDYLKAGLLDRAEELLEKL--LELDPDDAEALR 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  579 LLAGL-GKNGKIQEAIELFEGMVQKGcPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM--GCVPDVFTYNTIifgLVK 655
Cdd:COG2956   115 LLAEIyEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKALKLdpDCARALLLLAEL---YLE 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  656 NGQVKEAMCFFHQMKKLvYPDFVtlcTLLPGVVKASLIEDAYKIITNFLYNC-ADQPANLFWEDLIGSILAEAGIDNAVS 734
Cdd:COG2956   191 QGDYEEAIAALERALEQ-DPDYL---PALPRLAELYEKLGDPEEALELLRKAlELDPSDDLLLALADLLERKEGLEAALA 266


                  ....*..
gi 257338012  735 FSERLVA 741
Cdd:COG2956   267 LLERQLR 273
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 759-967 1.34e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 44.31  E-value: 1.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   759 SC-KHNNVSGARTLFEKfTKDLGVQPKLPTYNLLIgglleadmieiaqdvFLQVKSTgcipdvatynfLLDAYGKSGKID 837
Cdd:pfam17177   20 KCsKHADATGALALYDA-AKAEGVRLAQYHYNVLL---------------YLCSKAA-----------DATDLKPQLAAD 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   838 ELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDlMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917
Cdd:pfam17177   73 RGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKE-MEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHM 151

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   918 LDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 967
Cdd:pfam17177  152 LAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRDAVRQVSESTAGVL 201
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 294-327 1.40e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 1.40e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   294 VTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPD 327
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 478-602 1.44e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 45.57  E-value: 1.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  478 LAKAGRDREAKQIFYGLK--DIGLVPDSVtyNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVnsLINTLYKADRVD 555
Cdd:PRK11788  224 ALAQGDYAAAIEALERVEeqDPEYLSEVL--PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLA--LAQLLEEQEGPE 299

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 257338012  556 EAWKmFMRMkEMKLKPTVVTYNTLLAG---LGKNGKIQEAIELFEGMVQK 602
Cdd:PRK11788  300 AAQA-LLRE-QLRRHPSLRGFHRLLDYhlaEAEEGRAKESLLLLRDLVGE 347
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 1053-1105 1.49e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.80  E-value: 1.49e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 257338012  1053 KIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Cdd:pfam13812    1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTY 53
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 466-515 1.51e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 1.51e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 257338012   466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSK 515
Cdd:pfam13041    1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 644-676 1.83e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.83e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   644 FTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPD 676
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERgIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 851-877 1.86e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.64  E-value: 1.86e-04
                           10        20
                   ....*....|....*....|....*..
gi 257338012   851 CEANTITHNIVISGLVKAGNVDDALDL 877
Cdd:pfam12854    3 LKPDVVTYNTLINGLCRAGRVDEAFEL 29
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 913-968 2.03e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 2.03e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 257338012   913 LFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 938-1089 2.34e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 43.54  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDcLCMVGRV----------DEGLHYFKELKESGLNPDVVCYNLIINGLG 1007
Cdd:pfam17177   23 KHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAADatdlkpqlaaDRGFEVFEAMKAQGVSPNEATYTAVARLAA 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  1008 KSHRLEEALVLFNEMKTSrGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAY 1087
Cdd:pfam17177  102 AKGDGDLAFDLVKEMEAA-GVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVY 180


                   ..
gi 257338012  1088 AV 1089
Cdd:pfam17177  181 AY 182
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 997-1028 2.77e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.99  E-value: 2.77e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 257338012   997 VCYNLIINGLGKSHRLEEALVLFNEMKtSRGI 1028
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMK-EKGI 31
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 819-1058 2.77e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  819 DVATYNFLLDAYGKSGKIDELFELYKEMsthecEANTITHNIVISGL----VKAGNVDDALDLYYDLMSDRDFSPTACTY 894
Cdd:COG2956    41 TVEAHLALGNLYRRRGEYDRAIRIHQKL-----LERDPDRAEALLELaqdyLKAGLLDRAEELLEKLLELDPDDAEALRL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  895 gpLIDGLSKSGRLYEAKQLFEGMLDYGcrPNCA-IYNILINGFGKAGEADAACALFKRMVKegVRPD-LKTYSVLVDCLC 972
Cdd:COG2956   116 --LAEIYEQEGDWEKAIEVLERLLKLG--PENAhAYCELAELYLEQGDYDEAIEALEKALK--LDPDcARALLLLAELYL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  973 MVGRVDEGLHYFKELKEsgLNPDvvcYNLIINGLGKSH----RLEEALVLFNEMKTSRGITPDLYTYNSLILNLgiaGMV 1048
Cdd:COG2956   190 EQGDYEEAIAALERALE--QDPD---YLPALPRLAELYeklgDPEEALELLRKALELDPSDDLLLALADLLERK---EGL 261

                         250
                  ....*....|
gi 257338012 1049 EEAGKIYNEI 1058
Cdd:COG2956   262 EAALALLERQ 271
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 176-236 3.15e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 3.15e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257338012   176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKR 236
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 370-526 3.18e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 43.15  E-value: 3.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   370 VDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI--CG-------LLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Cdd:pfam17177   18 LDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLylCSkaadatdLKPQLAADRGFEVFEAMKAQGVSPNEATYTAVA 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 520
Cdd:pfam17177   98 RLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRAD 177


                   ....*.
gi 257338012   521 EAIKLL 526
Cdd:pfam17177  178 KVYAYL 183
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 644-671 3.31e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.99  E-value: 3.31e-04
                           10        20
                   ....*....|....*....|....*...
gi 257338012   644 FTYNTIIFGLVKNGQVKEAMCFFHQMKK 671
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 187-235 3.55e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 3.55e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 257338012   187 NAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGK 235
Cdd:pfam13041    2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 1068-1102 3.93e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.93e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012  1068 FTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNT 1102
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 408-564 4.00e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 4.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  408 LLRVHRLDDALELFGNMESLGVKPTAYTYIVFiDYYGKSGDSVSALETFEKMKTkgIAPNivaCNASLYSLA----KAGR 483
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELA-ELYLEQGDYDEAIEALEKALK--LDPD---CARALLLLAelylEQGD 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  484 DREAKQIFygLKDIGLVPDSV-TYNMMMKCYSKVGEIDEAIKLLSEMMENgcEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Cdd:COG2956   194 YEEAIAAL--ERALEQDPDYLpALPRLAELYEKLGDPEEALELLRKALEL--DPSDDLLLALADLLERKEGLEAALALLE 269


                  ..
gi 257338012  563 RM 564
Cdd:COG2956   270 RQ 271
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 885-917 4.32e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.48  E-value: 4.32e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012   885 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 1033-1067 4.46e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 4.46e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012  1033 YTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1067
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 822-855 4.88e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 4.88e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   822 TYNFLLDAYGKSGKIDELFELYKEMSTHECEANT 855
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 1062-1094 5.26e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.48  E-value: 5.26e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 257338012  1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Cdd:pfam12854    2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 235-391 5.31e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 42.77  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   235 KRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG---------KINEAYEILKRMDDEGCGPDVVTYTVLIDALCT 305
Cdd:pfam17177   23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVARLAAA 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   306 ARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDsvKQFWSE--MEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Cdd:pfam17177  103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDAD--KAYEVEehMLAHGVELEEPELAALLKVSAKAGRADKVY 180


                   ....*...
gi 257338012   384 DTLDVMRD 391
Cdd:pfam17177  181 AYLHRLRD 188
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 542-573 6.11e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 6.11e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 257338012   542 NSLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573
Cdd:TIGR00756    4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 856-891 8.80e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 8.80e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 257338012   856 ITHNIVISGLVKAGNVDDALDLyYDLMSDRDFSPTA 891
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALEL-FKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 225-258 9.52e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 9.52e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNV 258
Cdd:TIGR00756    2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 364-394 1.02e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 1.02e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 257338012   364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGI 394
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 822-851 1.10e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 1.10e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 257338012   822 TYNFLLDAYGKSGKIDELFELYKEMSTHEC 851
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 329-363 1.32e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 1.32e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   329 VTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 270-396 1.38e-03

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 41.23  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   270 RAGKINEAYEILKRMDDEGCGPDVVTYTVLIDaLCTA----------RKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFS 339
Cdd:pfam17177   23 KHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKaadatdlkpqLAADRGFEVFEAMKAQGVSPNEATYTAVARLAA 101

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 257338012   340 DNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Cdd:pfam17177  102 AKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
464-597 1.39e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.53  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012  464 IAPNIVACNASL-YSLAKAGRDREAKQIFygLKDIGLVPD-SVTYNMMMKCYSKVGEIDEAIKLLSEMMENgcEPDVIVV 541
Cdd:COG0457     3 LDPDDAEAYNNLgLAYRRLGRYEEAIEDY--EKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALEL--DPDDAEA 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 257338012  542 -NSLINTLYKADRVDEAWKMFmrMKEMKLKPTVV-TYNTLLAGLGKNGKIQEAIELFE 597
Cdd:COG0457    79 lNNLGLALQALGRYEEALEDY--DKALELDPDDAeALYNLGLALLELGRYDEAIEAYE 134
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 294-320 1.58e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 1.58e-03
                           10        20
                   ....*....|....*....|....*..
gi 257338012   294 VTYTVLIDALCTARKLDCAKEVFEKMK 320
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMK 27
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 434-468 1.79e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 257338012   434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNI 468
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 595-650 2.02e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.72  E-value: 2.02e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 257338012   595 LFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 259-289 2.27e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 2.27e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 257338012   259 YTFTICIRVLGRAGKINEAYEILKRMDDEGC 289
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 189-222 2.47e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 2.47e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   189 YSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPS 222
Cdd:TIGR00756    1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 400-429 2.63e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.29  E-value: 2.63e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 257338012   400 TYNTLICGLLRVHRLDDALELFGNMESLGV 429
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 984-1039 2.80e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 2.80e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 257338012   984 FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKtSRGITPDLYTYNSLI 1039
Cdd:pfam13812    3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMK-KKGIKPTLDTYNAIL 57
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 609-639 3.30e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 3.30e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 257338012   609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGC 639
Cdd:pfam01535    1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 963-992 4.22e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 4.22e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 257338012   963 TYSVLVDCLCMVGRVDEGLHYFKELKESGL 992
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 210-269 4.76e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 4.76e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257338012   210 VYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLG 269
Cdd:pfam13812    2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 893-922 5.67e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 5.67e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 257338012   893 TYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922
Cdd:pfam01535    2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 955-988 7.87e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 7.87e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 257338012   955 EGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK 988
Cdd:pfam12854    1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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