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Conserved domains on  [gi|333936343|emb|CBY99403|]
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protein kinase C homolog, partial [Neurospora perkinsii]

Protein Classification

serine/threonine-protein kinase N( domain architecture ID 11128916)

serine/threonine-protein kinase N catalyzes the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HR1 super family cl00087
Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small ...
117-160 9.13e-19

Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases; The HR1 domain, also called the ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. It is found in Rho effector proteins including PKC-related kinases such as vertebrate PRK1 (or PKN) and yeast PKC1 protein kinases C, as well as in rhophilins and Rho-associated kinase (ROCK). Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 domains may occur in repeat arrangements (PKN contains three HR1 domains), separated by a short linker region.


The actual alignment was detected with superfamily member cd11620:

Pssm-ID: 469609  Cd Length: 72  Bit Score: 75.47  E-value: 9.13e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 333936343 117 PHLGPRIQLMLSQIQFKLNVEEQYLKGIEKMVQLYQMEGDKKSK 160
Cdd:cd11620    1 PLTGAKIQRMLQQLEFKLQVEKQYKEGIEKMARLYQAEGDKRSI 44
HR1 pfam02185
Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of ...
1-31 4.84e-05

Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN). The first two of these repeats were later shown to bind the small G protein rho known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography. It forms an antiparallel coiled-coil fold termed an ACC finger.


:

Pssm-ID: 460478 [Multi-domain]  Cd Length: 67  Bit Score: 39.43  E-value: 4.84e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 333936343    1 RSKLDTQMREGRRNLEFFEEKLRELQMRRLG 31
Cdd:pfam02185  35 LAEAESELRESNRKIQLLREQLRELQARHLP 65
 
Name Accession Description Interval E-value
HR1_PKC-like_2_fungi cd11620
Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal ...
117-160 9.13e-19

Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal Protein Kinase C-like proteins; This subfamily is composed of fungal PKC-like proteins including Pkc1p from Saccharomyces cerevisiae, and Pck1p and Pck2p from Schizosaccharomyces pombe. The yeast PKC-like proteins play a critical role in regulating cell wall biosynthesis and maintaining cell wall integrity. They contain two HR1 domains, C2 and C1 domains, and a kinase domain. This model characterizes the second HR1 domain. HR1 domains are anti-parallel coiled-coil (ACC) domains that bind small GTPases from the Rho family. The HR1 domains of Pck1p and Pck2p interact with GTP-bound Rho1p and Rho2p.


Pssm-ID: 212010  Cd Length: 72  Bit Score: 75.47  E-value: 9.13e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 333936343 117 PHLGPRIQLMLSQIQFKLNVEEQYLKGIEKMVQLYQMEGDKKSK 160
Cdd:cd11620    1 PLTGAKIQRMLQQLEFKLQVEKQYKEGIEKMARLYQAEGDKRSI 44
HR1 pfam02185
Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of ...
126-160 1.26e-07

Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN). The first two of these repeats were later shown to bind the small G protein rho known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography. It forms an antiparallel coiled-coil fold termed an ACC finger.


Pssm-ID: 460478 [Multi-domain]  Cd Length: 67  Bit Score: 46.36  E-value: 1.26e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 333936343  126 MLSQIQFKLNVEEQYLKGIEKMVQLYQMEGDKKSK 160
Cdd:pfam02185   1 RLQELRKKIEVEKKIKEGAENMLRLLQATKDRKVL 35
Hr1 smart00742
Rho effector or protein kinase C-related kinase homology region 1 homologues; Alpha-helical ...
125-160 3.17e-05

Rho effector or protein kinase C-related kinase homology region 1 homologues; Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain


Pssm-ID: 128981  Cd Length: 57  Bit Score: 39.48  E-value: 3.17e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 333936343   125 LMLSQIQFKLNVEEQYLKGIEKMVQLYQmeGDKKSK 160
Cdd:smart00742   1 LRLEDLRRKIEKELKVKEGAENMRKLTS--NDRKVL 34
HR1 pfam02185
Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of ...
1-31 4.84e-05

Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN). The first two of these repeats were later shown to bind the small G protein rho known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography. It forms an antiparallel coiled-coil fold termed an ACC finger.


Pssm-ID: 460478 [Multi-domain]  Cd Length: 67  Bit Score: 39.43  E-value: 4.84e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 333936343    1 RSKLDTQMREGRRNLEFFEEKLRELQMRRLG 31
Cdd:pfam02185  35 LAEAESELRESNRKIQLLREQLRELQARHLP 65
HR1_PKC-like_1_fungi cd11621
First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal ...
3-31 5.55e-03

First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal Protein Kinase C-like proteins; This subfamily is composed of fungal PKC-like proteins including Pkc1p from Saccharomyces cerevisiae, and Pck1p and Pck2p from Schizosaccharomyces pombe. The yeast PKC-like proteins play a critical role in regulating cell wall biosynthesis and maintaining cell wall integrity. They contain two HR1 domains, C2 and C1 domains, and a kinase domain. This model characterizes the first HR1 domain. HR1 domains are anti-parallel coiled-coil (ACC) domains that bind small GTPases from the Rho family. The HR1 domains of Pck1p and Pck2p interact with GTP-bound Rho1p and Rho2p.


Pssm-ID: 212011  Cd Length: 72  Bit Score: 33.89  E-value: 5.55e-03
                         10        20
                 ....*....|....*....|....*....
gi 333936343   3 KLDTQMREGRRNLEFFEEKLRELQMRRLG 31
Cdd:cd11621   39 RLNSNIRESRSNIDYLEERLNKLTLRKAG 67
 
Name Accession Description Interval E-value
HR1_PKC-like_2_fungi cd11620
Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal ...
117-160 9.13e-19

Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal Protein Kinase C-like proteins; This subfamily is composed of fungal PKC-like proteins including Pkc1p from Saccharomyces cerevisiae, and Pck1p and Pck2p from Schizosaccharomyces pombe. The yeast PKC-like proteins play a critical role in regulating cell wall biosynthesis and maintaining cell wall integrity. They contain two HR1 domains, C2 and C1 domains, and a kinase domain. This model characterizes the second HR1 domain. HR1 domains are anti-parallel coiled-coil (ACC) domains that bind small GTPases from the Rho family. The HR1 domains of Pck1p and Pck2p interact with GTP-bound Rho1p and Rho2p.


Pssm-ID: 212010  Cd Length: 72  Bit Score: 75.47  E-value: 9.13e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 333936343 117 PHLGPRIQLMLSQIQFKLNVEEQYLKGIEKMVQLYQMEGDKKSK 160
Cdd:cd11620    1 PLTGAKIQRMLQQLEFKLQVEKQYKEGIEKMARLYQAEGDKRSI 44
HR1 pfam02185
Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of ...
126-160 1.26e-07

Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN). The first two of these repeats were later shown to bind the small G protein rho known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography. It forms an antiparallel coiled-coil fold termed an ACC finger.


Pssm-ID: 460478 [Multi-domain]  Cd Length: 67  Bit Score: 46.36  E-value: 1.26e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 333936343  126 MLSQIQFKLNVEEQYLKGIEKMVQLYQMEGDKKSK 160
Cdd:pfam02185   1 RLQELRKKIEVEKKIKEGAENMLRLLQATKDRKVL 35
Hr1 smart00742
Rho effector or protein kinase C-related kinase homology region 1 homologues; Alpha-helical ...
125-160 3.17e-05

Rho effector or protein kinase C-related kinase homology region 1 homologues; Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain


Pssm-ID: 128981  Cd Length: 57  Bit Score: 39.48  E-value: 3.17e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 333936343   125 LMLSQIQFKLNVEEQYLKGIEKMVQLYQmeGDKKSK 160
Cdd:smart00742   1 LRLEDLRRKIEKELKVKEGAENMRKLTS--NDRKVL 34
HR1 pfam02185
Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of ...
1-31 4.84e-05

Hr1 repeat; The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN). The first two of these repeats were later shown to bind the small G protein rho known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography. It forms an antiparallel coiled-coil fold termed an ACC finger.


Pssm-ID: 460478 [Multi-domain]  Cd Length: 67  Bit Score: 39.43  E-value: 4.84e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 333936343    1 RSKLDTQMREGRRNLEFFEEKLRELQMRRLG 31
Cdd:pfam02185  35 LAEAESELRESNRKIQLLREQLRELQARHLP 65
HR1 cd00089
Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small ...
122-160 1.87e-04

Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases; The HR1 domain, also called the ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. It is found in Rho effector proteins including PKC-related kinases such as vertebrate PRK1 (or PKN) and yeast PKC1 protein kinases C, as well as in rhophilins and Rho-associated kinase (ROCK). Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 domains may occur in repeat arrangements (PKN contains three HR1 domains), separated by a short linker region.


Pssm-ID: 212008 [Multi-domain]  Cd Length: 68  Bit Score: 37.69  E-value: 1.87e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 333936343 122 RIQLMLSQIQFKLNVEEQYLKGIEKMVQLYQMEGDKKSK 160
Cdd:cd00089    2 KLQQRLEELRRKLEKELKIREGAENLLKLYSNPKVKKDL 40
HR1_PKC-like_1_fungi cd11621
First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal ...
3-31 5.55e-03

First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of fungal Protein Kinase C-like proteins; This subfamily is composed of fungal PKC-like proteins including Pkc1p from Saccharomyces cerevisiae, and Pck1p and Pck2p from Schizosaccharomyces pombe. The yeast PKC-like proteins play a critical role in regulating cell wall biosynthesis and maintaining cell wall integrity. They contain two HR1 domains, C2 and C1 domains, and a kinase domain. This model characterizes the first HR1 domain. HR1 domains are anti-parallel coiled-coil (ACC) domains that bind small GTPases from the Rho family. The HR1 domains of Pck1p and Pck2p interact with GTP-bound Rho1p and Rho2p.


Pssm-ID: 212011  Cd Length: 72  Bit Score: 33.89  E-value: 5.55e-03
                         10        20
                 ....*....|....*....|....*....
gi 333936343   3 KLDTQMREGRRNLEFFEEKLRELQMRRLG 31
Cdd:cd11621   39 RLNSNIRESRSNIDYLEERLNKLTLRKAG 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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