|
Name |
Accession |
Description |
Interval |
E-value |
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-287 |
1.09e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 51 YNGARYLMGFGftaAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAF------RAQIDSL 124
Cdd:COG4913 597 RIRSRYVLGFD---NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvasaEREIAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 125 KEENRQLQQSNRDRD---REMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAkTEDTGAEWESKKLK 201
Cdd:COG4913 674 EAELERLDASSDDLAaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA-AEDLARLELRALLE 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 202 LRNEQVLTISRQMQAVVSQNEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISqlrIEELFNQNRRLTQILPEEL 281
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAD---LESLPEYLALLDRLEEDGL 829
|
....*.
gi 373220161 282 VEHVSQ 287
Cdd:COG4913 830 PEYEER 835
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
956-1536 |
3.71e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 956 KEAEIAAKMENIDKLKEESETE-MLRIRALRTANEVLSNFDGHEMQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVH 1034
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEARKAEdAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1035 LKEQRVAELNDEMRELKQwnLELITTLENIKTFKGERRESQHIKPEISLKPRESIAVDQLEDSMDKESDY-----EMDIK 1109
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKK--AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAakaeaEAAAD 1357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1110 SETSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKIDEGVQIIEKVEIVH 1189
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1190 QEVEiPDRSTEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQ----DDVSERIERFKEFLDEEVQTEWEYPQVSSRL 1265
Cdd:PTZ00121 1438 KKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1266 NNEE-----EVEQLPKSAKSEKVRRLEE-----EMQLLQELVAKSDSKDGENMRQKTEIRDL------------KARIQR 1323
Cdd:PTZ00121 1517 KAEEakkadEAKKAEEAKKADEAKKAEEkkkadELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakkaeEARIEE 1596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1324 LTKT-NKELLVTCEQIKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTK 1402
Cdd:PTZ00121 1597 VMKLyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1403 NE---PDEWERRKRQDEIIASLKEK-----LKKRDIAEKDYLEKLKKREMVietmrndqglRSSEIERLQRKLKANDPSV 1474
Cdd:PTZ00121 1677 AEeakKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEE----------NKIKAEEAKKEAEEDKKKA 1746
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 373220161 1475 IKLQLNKEWKEKLDVLEANITKKNEELTACNRTLlrLKSELETNRKRHASEIEKIRVDNNSN 1536
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
630-1293 |
1.65e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 630 KSYQEMKAQLEMAYGEIQSLKKENLMIEERTLEElkqtESVELQRLVESINVEGSEMERRLGEATRMLVTERMERMRFTR 709
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEA----ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 710 QCTILRTKTERLEEATRKSKEMLRtkelNAQRAIGRLKYEVETTTIEIGRLQTRLlqsvpteeydklmrkykrlikettg 789
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRR----ELEERLEELEEELAELEEELEELEEEL------------------------- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 790 vETNNEEVMARQEMTVYAKSPVEAELEARENMLKKMIDVVSDQSDFWNQESAMLQAENEELKKFIEDVENESDLKSVLga 869
Cdd:COG1196 340 -EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-- 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 870 veRRLLSTIRELRENEREYLREKKKSRGNDIESSRDSERLRQERVALINVIIVLQRENKTLRdqavgtvslQQLELLRSN 949
Cdd:COG1196 417 --ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE---------AALAELLEE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 950 IFQARQKEaEIAAKMENIDKLKEESETEMLRIRALRTANEVLSNFDGHEMQPQGNNEVAERQLQLAYFTSSQQSAKakqf 1029
Cdd:COG1196 486 LAEAAARL-LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA---- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1030 ERMVHLKEQRVAELndemrelkqwnlelittlenikTFKGERRESQhikPEISLKPRESIAVDQLEDSMDKESDYEmdik 1109
Cdd:COG1196 561 AAIEYLKAAKAGRA----------------------TFLPLDKIRA---RAALAAALARGAIGAAVDLVASDLREA---- 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1110 seTSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKIDEGVQIIEKVEIVH 1189
Cdd:COG1196 612 --DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1190 QEVEipdrstEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNNEE 1269
Cdd:COG1196 690 EEEL------ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
650 660
....*....|....*....|....
gi 373220161 1270 EVEQlpksakseKVRRLEEEMQLL 1293
Cdd:COG1196 764 ELER--------ELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1197-1469 |
6.03e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 6.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1197 RSTEEQLRKTEVKLKELESEMRKLK--AKRAEIVKNDDEQ----------DDVSERIERFKEFLDEEVQTEWEYPQVSSR 1264
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLErqAEKAERYKELKAElrelelallvLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1265 LNN-EEEVEQLpKSAKSEKVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLT-----------------K 1326
Cdd:TIGR02168 262 LQElEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaqleeleskldelaeelA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1327 TNKELLVTCEQIKEDALAELSTFRRNNENSdERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEPD 1406
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEEL-ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 373220161 1407 EWERRKRQDEIIASLKEKLKKRDIAEKDYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLKA 1469
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-286 |
8.52e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 62 FTAAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITS-----------KADVGDSTEAFRAQIDSLKEENRQ 130
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelaeaeaeIEELEAQIEQLKEELKALREALDE 807
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 131 LQQSNRDRDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEDtgAEWESKKLKLRNEQVLTI 210
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL--IEELESELEALLNERASL 885
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 373220161 211 SRQMQAVVSQNEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEHVS 286
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
839-1696 |
2.29e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 839 ESAMLQAENEELKKFIEDVENESDLKSVLGAVERRLLSTIRElRENEREYLREKKKsrgndiessrdsERLRQERVALIN 918
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ-AKKALEYYQLKEK------------LELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 919 VIIVLQRENKTLRDQAVGTVSLQQLELLRSNIFQA--RQKEAEIAAKMENIDKLKEESETEMLRIRALRTANEVLSNFDG 996
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEklAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 997 HEMQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVHLKEQRVAELNDEMRELKQWNLELITTLENIKTFKGERRESQH 1076
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1077 IKPEISLKPReSIAVDQLEDSMDKESDYEMDIKSETSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQ 1156
Cdd:pfam02463 391 KLKEEELELK-SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1157 LELKEIAIDryKKLLREKIDEGVQIIEKVEIVHQEVEIPDRSTEEQLRKTEVKLKELESEMRKLK----AKRAEIVKNDD 1232
Cdd:pfam02463 470 SEDLLKETQ--LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGdlgvAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1233 EQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNNEEEVEQLPKSAKSEKVRRLEEEMQLLQELVAKSDSKD-GENMRQK 1311
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkRAKVVEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1312 TEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSR 1391
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1392 LKQTVERRDTKNEPDEWERRKRQDEIIASLKEKLKKRDIAEKDYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLKAND 1471
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1472 PSVIKLQLNKEWKEKLDVLEANITKKNEELTACNRTLLRLKSELETNRKRHASEIEKIRVDNNSNVQKEVKRAREEVKKA 1551
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1552 MTVIKPQMSTVEIQADLLEKRHSGSTKSHRSEtvshnkiELSTISSSSSSISSPASSSKSHRSKTLKSISRDSILEERRL 1631
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEK-------KELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 373220161 1632 SQKSFDEQPNIPapksdtSDYYQLRESLQMTQERLIESQEKLIQMERDYSSLHEKFDRLKLRFDR 1696
Cdd:pfam02463 941 LLEEADEKEKEE------NNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER 999
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
81-497 |
2.85e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 81 EKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAFRAQIDSLKEENRQLQQSNRDRDREMADQRDRFENLASRVDTLT 160
Cdd:PRK02224 227 EQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 161 RERDALSEHKAQLEDTIRELNRRLS--------AKTEDTGAEWESKKLKLRN----EQVLTISRQMQAVVSQNEELREEI 228
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEecrvaaqaHNEEAESLREDADDLEERAeelrEEAAELESELEEAREAVEDRREEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 229 DRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILP--EELVEHVSQCISAAETMLSGRPIDKVNF 306
Cdd:PRK02224 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtaRERVEEAEALLEAGKCPECGQPVEGSPH 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 307 LIEVGDLLAPKFLNEDDKKALEDATGLTEAE-EQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRtgEKEQELEQ 385
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR--ERAEELRE 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 386 LKKELVDATTLARNLFGEAMSEV-PGQDPTMTLQMRILQLEHSIEQLNDEKEKQKKVmEELQFTIEQKDENNgEVLSELN 464
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAeEAREEVAELNSKLAELKERIESLERIRTLLAAI-ADAEDEIERLREKR-EALAELN 622
|
410 420 430
....*....|....*....|....*....|...
gi 373220161 465 RLKDAKFGSAREEITRLEKqmKFRDEQIGKLQQ 497
Cdd:PRK02224 623 DERRERLAEKRERKRELEA--EFDEARIEEARE 653
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-528 |
9.63e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 9.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 65 AEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAFRAQI----DSLKEENRQLQQSNRDRDR 140
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeealLEAEAELAEAEEELEELAE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 141 EMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEDtgAEWESKKLKLRNEQVLTISRQMQAVVSQ 220
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE--EEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 221 NEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEHVSQCISAAETMLSGRP 300
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 301 IDKVNFLIEVGDLLAPKFLNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRTGEKE 380
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 381 QELEQLKKELVD---ATTLARNLFGEAMSEVPGQDPTMTLQMRILQLEHSIEQLNDEKEKQKKVMEELQFTIEQKDENng 457
Cdd:COG1196 625 RTLVAARLEAALrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE-- 702
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 373220161 458 evLSELNRLKDAKFGSAREEITRLEKQMKFRDEQIGKLQQHCTLLQVELGRYAEGTYEPIVKPSLPRRIRR 528
Cdd:COG1196 703 --EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
168-509 |
1.52e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 168 EHKAQLEDTIRELNRRLsaKTEDTGAEWESKKLKLRNEQvltisRQMQAVVSQN--EELREEIDRVSYALEEATRIIEQS 245
Cdd:TIGR02168 186 ENLDRLEDILNELERQL--KSLERQAEKAERYKELKAEL-----RELELALLVLrlEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 246 AVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEelvehVSQCISAAET---MLSGRPIDKVNFLIEVGDLLApkflnED 322
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYA-----LANEISRLEQqkqILRERLANLERQLEELEAQLE-----EL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 323 DKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESnkmrtmirEDRTGEKEQELEQLKKELVDattlARNLFG 402
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL--------ESRLEELEEQLETLRSKVAQ----LELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 403 EAMSEVPGQDPTMT-LQMRILQLEHSIEQLNDEKEKQKkvMEELQFTIEQKDENNGEVLSELNRLKdAKFGSAREEITRL 481
Cdd:TIGR02168 397 SLNNEIERLEARLErLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLE-EALEELREELEEA 473
|
330 340
....*....|....*....|....*...
gi 373220161 482 EKQMKFRDEQIGKLQQHCTLLQVELGRY 509
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENL 501
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
63-446 |
9.90e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 63 TAAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRIT----------SKADVGDST-EAFRAQIDSLKEENRQL 131
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADdleeraeelrEEAAELESElEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 132 QQSNRDRDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRL--------SAKTEDTGAEWESK----K 199
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVeeaealleAGKCPECGQPVEGSphveT 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 200 LKLRNEQVLTISRQMQAVVSQNEELREEIDRVSYALEEATRI------IEQSAVRYTEMTNKLEISQLRIEELfnqnRRL 273
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIerleerREDLEELIAERRETIEEKRERAEEL----RER 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 274 TQILPEELVEHVSQCISAAETMLSGRpidkvnflIEVGDLLAPKFLNEDDKKALED-ATGLTEAEEQKEKLERAEDRVKG 352
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAR--------EEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLREKREA 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 353 LQDELNAVVEESNKMRTMIREDRTGEKEQELEQLKKELVDATTLARNLFGEAMSEVPGQDptmTLQMRILQLEHSIEQLN 432
Cdd:PRK02224 618 LAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERD---DLQAEIGAVENELEELE 694
|
410
....*....|....
gi 373220161 433 DEKEKQKKVMEELQ 446
Cdd:PRK02224 695 ELRERREALENRVE 708
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
79-498 |
8.03e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 79 MAEKEDQWEEQKTALNLEIEslrdriTSKADVgdstEAFRAQIDSLKEENRQLQQSN---RDRDREMADQ-RDRFENLAS 154
Cdd:pfam12128 292 LRTLDDQWKEKRDELNGELS------AADAAV----AKDRSELEALEDQHGAFLDADietAAADQEQLPSwQSELENLEE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 155 RVDTLT------------RERDALSEHKAQLE------DTIRELNRRLSAKTEDTGAEWESKKLKLRNEQVLTISRQMQA 216
Cdd:pfam12128 362 RLKALTgkhqdvtakynrRRSKIKEQNNRDIAgikdklAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 217 VVSQNEELREEIDRVSYALEEATRiIEQSAVRYTEMTNKLEISQLRIEELF-----------NQNRRLTQIlpEELVEHV 285
Cdd:pfam12128 442 LKSRLGELKLRLNQATATPELLLQ-LENFDERIERAREEQEAANAEVERLQselrqarkrrdQASEALRQA--SRRLEER 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 286 SQCISAAETMLSGRPIDKVNFLIE--------VGDLLAPKFLNEDDKKALEDATGLTEaeeqkekleraEDRVKGLQDEL 357
Cdd:pfam12128 519 QSALDELELQLFPQAGTLLHFLRKeapdweqsIGKVISPELLHRTDLDPEVWDGSVGG-----------ELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 358 NAV-VEESNKMRTMIREdrtgekeqELEQLKKELVDAttlarnlfgeamsevpgqdptmtlQMRILQLEHSIEQLNDEKE 436
Cdd:pfam12128 588 KRIdVPEWAASEEELRE--------RLDKAEEALQSA------------------------REKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 373220161 437 KQKKVMEELQFTIEQKDENNGEVLSELNRLKDAK-------FGSAREEITRLEKQMKFRDEQIGKLQQH 498
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLFDEKQSEKDKKnkalaerKDSANERLNSLEAQLKQLDKKHQAWLEE 704
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-287 |
1.09e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 51 YNGARYLMGFGftaAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAF------RAQIDSL 124
Cdd:COG4913 597 RIRSRYVLGFD---NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvasaEREIAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 125 KEENRQLQQSNRDRD---REMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAkTEDTGAEWESKKLK 201
Cdd:COG4913 674 EAELERLDASSDDLAaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA-AEDLARLELRALLE 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 202 LRNEQVLTISRQMQAVVSQNEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISqlrIEELFNQNRRLTQILPEEL 281
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAD---LESLPEYLALLDRLEEDGL 829
|
....*.
gi 373220161 282 VEHVSQ 287
Cdd:COG4913 830 PEYEER 835
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
956-1536 |
3.71e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 3.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 956 KEAEIAAKMENIDKLKEESETE-MLRIRALRTANEVLSNFDGHEMQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVH 1034
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEARKAEdAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1035 LKEQRVAELNDEMRELKQwnLELITTLENIKTFKGERRESQHIKPEISLKPRESIAVDQLEDSMDKESDY-----EMDIK 1109
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKK--AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAakaeaEAAAD 1357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1110 SETSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKIDEGVQIIEKVEIVH 1189
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1190 QEVEiPDRSTEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQ----DDVSERIERFKEFLDEEVQTEWEYPQVSSRL 1265
Cdd:PTZ00121 1438 KKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1266 NNEE-----EVEQLPKSAKSEKVRRLEE-----EMQLLQELVAKSDSKDGENMRQKTEIRDL------------KARIQR 1323
Cdd:PTZ00121 1517 KAEEakkadEAKKAEEAKKADEAKKAEEkkkadELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakkaeEARIEE 1596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1324 LTKT-NKELLVTCEQIKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTK 1402
Cdd:PTZ00121 1597 VMKLyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1403 NE---PDEWERRKRQDEIIASLKEK-----LKKRDIAEKDYLEKLKKREMVietmrndqglRSSEIERLQRKLKANDPSV 1474
Cdd:PTZ00121 1677 AEeakKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKKAEEE----------NKIKAEEAKKEAEEDKKKA 1746
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 373220161 1475 IKLQLNKEWKEKLDVLEANITKKNEELTACNRTLlrLKSELETNRKRHASEIEKIRVDNNSN 1536
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
630-1293 |
1.65e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 630 KSYQEMKAQLEMAYGEIQSLKKENLMIEERTLEElkqtESVELQRLVESINVEGSEMERRLGEATRMLVTERMERMRFTR 709
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEA----ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 710 QCTILRTKTERLEEATRKSKEMLRtkelNAQRAIGRLKYEVETTTIEIGRLQTRLlqsvpteeydklmrkykrlikettg 789
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRR----ELEERLEELEEELAELEEELEELEEEL------------------------- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 790 vETNNEEVMARQEMTVYAKSPVEAELEARENMLKKMIDVVSDQSDFWNQESAMLQAENEELKKFIEDVENESDLKSVLga 869
Cdd:COG1196 340 -EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-- 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 870 veRRLLSTIRELRENEREYLREKKKSRGNDIESSRDSERLRQERVALINVIIVLQRENKTLRdqavgtvslQQLELLRSN 949
Cdd:COG1196 417 --ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE---------AALAELLEE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 950 IFQARQKEaEIAAKMENIDKLKEESETEMLRIRALRTANEVLSNFDGHEMQPQGNNEVAERQLQLAYFTSSQQSAKakqf 1029
Cdd:COG1196 486 LAEAAARL-LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA---- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1030 ERMVHLKEQRVAELndemrelkqwnlelittlenikTFKGERRESQhikPEISLKPRESIAVDQLEDSMDKESDYEmdik 1109
Cdd:COG1196 561 AAIEYLKAAKAGRA----------------------TFLPLDKIRA---RAALAAALARGAIGAAVDLVASDLREA---- 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1110 seTSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKIDEGVQIIEKVEIVH 1189
Cdd:COG1196 612 --DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1190 QEVEipdrstEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNNEE 1269
Cdd:COG1196 690 EEEL------ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
650 660
....*....|....*....|....
gi 373220161 1270 EVEQlpksakseKVRRLEEEMQLL 1293
Cdd:COG1196 764 ELER--------ELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1205-1492 |
2.86e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1205 KTEVKLKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNNEEEVEQLPKSAKSEKVR 1284
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1285 RLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTFRRnNENSDERRMTDL 1364
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE-ALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1365 RVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEPDEWERRKRQDEIIASLKEKLKKRDiAEKDYLEKLKKREM 1444
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE-ALEEAAEEEAELEE 456
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 373220161 1445 VIETMRNDQGLRSSEIERLQRKLKANDPSVIKLQLNKEWKEKLDVLEA 1492
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
64-283 |
4.63e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 64 AAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRItskadvgdstEAFRAQIDSLKEENRQLQQSNRDRDREMA 143
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL----------EELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 144 DQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEdtgaeweskKLKLRNEQVLTISRQMQAVVSQNEE 223
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---------ELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 224 LREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVE 283
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1197-1469 |
6.03e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 6.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1197 RSTEEQLRKTEVKLKELESEMRKLK--AKRAEIVKNDDEQ----------DDVSERIERFKEFLDEEVQTEWEYPQVSSR 1264
Cdd:TIGR02168 182 ERTRENLDRLEDILNELERQLKSLErqAEKAERYKELKAElrelelallvLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1265 LNN-EEEVEQLpKSAKSEKVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLT-----------------K 1326
Cdd:TIGR02168 262 LQElEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaqleeleskldelaeelA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1327 TNKELLVTCEQIKEDALAELSTFRRNNENSdERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEPD 1406
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEEL-ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 373220161 1407 EWERRKRQDEIIASLKEKLKKRDIAEKDYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLKA 1469
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
812-1549 |
7.96e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 812 EAELEARENMLKKMIDVVSDQSDFWNQESAMLQAENEELKKFIEDVENEsdlKSVLGAVERRLLSTIRELRENEREYLRE 891
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ---KQILRERLANLERQLEELEAQLEELESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 892 KKKSRGNDIESSRDSERLRQERVALINVIIVLQRENKTLRDQAVGtvSLQQLELLRSNIFQARQKEAEIAAKMENIDKLK 971
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 972 EESETEMLRIRALRTA----------NEVLSNFDGHEM---QPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVHLKEQ 1038
Cdd:TIGR02168 410 ERLEDRRERLQQEIEEllkkleeaelKELQAELEELEEeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1039 RVAELNDEMRELKQWNLELITTLENIKTFKGER-RESQHIKP--------EISLKPR-ESIAVDQLEDSMD--------- 1099
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGILgVLSELISVdegyeaaiEAALGGRlQAVVVENLNAAKKaiaflkqne 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1100 --KESDYEMDIKSETSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELkEIAIDRYKKLLRekidE 1177
Cdd:TIGR02168 570 lgRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDL-DNALELAKKLRP----G 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1178 GVQIIEKVEIVHQEVEIP--DRSTEEQLRKTEVKLKELESEMRKLKAKRAEIvknDDEQDDVSERIERFKEFLDEEVQTE 1255
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVITggSAKTNSSILERRREIEELEEKIEELEEKIAEL---EKALAELRKELEELEEELEQLRKEL 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1256 WEYPQVSSRLNNEeeveqlpksaksekVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLTKTNKELLVTC 1335
Cdd:TIGR02168 722 EELSRQISALRKD--------------LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1336 EQIKEDALAELSTFRrnnensdeRRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDtknepdewERRKRQD 1415
Cdd:TIGR02168 788 EAQIEQLKEELKALR--------EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE--------EQIEELS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1416 EIIASLKEKLKKRDIAEKDYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLkandpsviklqlnKEWKEKLDVLEANIT 1495
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL-------------RELESKRSELRRELE 918
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 373220161 1496 KKNEELTACNRTLLRLKSELETNRKR----------HASEIEKIRVDNNSNVQKEVKRAREEVK 1549
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERlseeysltleEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-286 |
8.52e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 62 FTAAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITS-----------KADVGDSTEAFRAQIDSLKEENRQ 130
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelaeaeaeIEELEAQIEQLKEELKALREALDE 807
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 131 LQQSNRDRDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEDtgAEWESKKLKLRNEQVLTI 210
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL--IEELESELEALLNERASL 885
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 373220161 211 SRQMQAVVSQNEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEHVS 286
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1173-1571 |
9.18e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 9.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1173 EKIDEGVQIIEKVEIVHQEVEIPDRSTEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEV 1252
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1253 QTEWEYPQVSSRLNN-EEEVEQLpkSAKSEKVRRLEEEMQLLQELVAKSDskdgENMRQKTEIRDLKARIQRLTKTNKEL 1331
Cdd:PRK03918 311 EIEKRLSRLEEEINGiEERIKEL--EEKEERLEELKKKLKELEKRLEELE----ERHELYEEAKAKKEELERLKKRLTGL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1332 lvTCEQIKEDaLAELstfrrnnensdERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEPDEWERR 1411
Cdd:PRK03918 385 --TPEKLEKE-LEEL-----------EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1412 K----RQDEIIASLKEKLKKRDIAEKDYLEKLKKREMVIETMRNDQGLRS--SEIERLQRKLKANDPSVI--KLQLNKEW 1483
Cdd:PRK03918 451 KelleEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELekKAEEYEKL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1484 KEKLDVLEANIT------KKNEELTACNRTLLRLKSELETNRKRHASEIEKIRVDNNSNVQKEVKRAREEVKKAMTvIKP 1557
Cdd:PRK03918 531 KEKLIKLKGEIKslkkelEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE-LKD 609
|
410
....*....|....
gi 373220161 1558 QMSTVEIQADLLEK 1571
Cdd:PRK03918 610 AEKELEREEKELKK 623
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
64-486 |
1.16e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 64 AAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKAD--------VGDSTEAFRAQIDSLKEENRQLQQSN 135
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAqleeleeaEEALLERLERLEEELEELEEALAELE 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 136 RDRDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEDTGAEWESKKLKLRNEQVLTISRQMQ 215
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 216 AVVSQNE------ELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELfnqnRRLTqILPEELVEHVSQCI 289
Cdd:COG1196 515 LLAGLRGlagavaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA----GRAT-FLPLDKIRARAALA 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 290 SAAETMLSGRPIDKVNFLIEVGDLLAPKFLNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRT 369
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 370 MIREDRTGEKEQELEQLKKELVDATTLARNLFGEAMSEvpgqdptmtLQMRILQLEHSIEQLNDEKEKQKKVMEELQFTI 449
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEER---------ELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
410 420 430
....*....|....*....|....*....|....*..
gi 373220161 450 EQKDENNGEVLSELNRLKDAKFGSAREEITRLEKQMK 486
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1136-1460 |
1.36e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 50.43 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1136 ENRIKEIKA--SAQLAVQGYKEQL---ELKEIAIDRYKKLlrEKIDEGVQIIEKVEIVHQEVEIPDRSTEEQLRK----- 1205
Cdd:PTZ00108 1012 SNKVRFIKHviNGELVITNAKKKDlvkELKKLGYVRFKDI--IKKKSEKITAEEEEGAEEDDEADDEDDEEELGAavsyd 1089
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1206 ----------TEVKLKELESEMRKlKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLnneeEVEQLP 1275
Cdd:PTZ00108 1090 yllsmpiwslTKEKVEKLNAELEK-KEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRL----KSKTKG 1164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1276 KSAKSEKVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTFRRNN-- 1353
Cdd:PTZ00108 1165 KASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRlk 1244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1354 ----------ENSDERRMTDLRVELDRLRTTNRTlrNANEEMKNELSrlKQTVERRDTKNEPDEWERRKRQDEIIASLKE 1423
Cdd:PTZ00108 1245 skknnsskssEDNDEFSSDDLSKEGKPKNAPKRV--SAVQYSPPPPS--KRPDGESNGGSKPSSPTKKKVKKRLEGSLAA 1320
|
330 340 350
....*....|....*....|....*....|....*..
gi 373220161 1424 KLKKRDiAEKDYLEKLKKREMVIETMRNDQGLRSSEI 1460
Cdd:PTZ00108 1321 LKKKKK-SEKKTARKKKSKTRVKQASASQSSRLLRRP 1356
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
839-1696 |
2.29e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 839 ESAMLQAENEELKKFIEDVENESDLKSVLGAVERRLLSTIRElRENEREYLREKKKsrgndiessrdsERLRQERVALIN 918
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQ-AKKALEYYQLKEK------------LELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 919 VIIVLQRENKTLRDQAVGTVSLQQLELLRSNIFQA--RQKEAEIAAKMENIDKLKEESETEMLRIRALRTANEVLSNFDG 996
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEklAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 997 HEMQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVHLKEQRVAELNDEMRELKQWNLELITTLENIKTFKGERRESQH 1076
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1077 IKPEISLKPReSIAVDQLEDSMDKESDYEMDIKSETSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQ 1156
Cdd:pfam02463 391 KLKEEELELK-SEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1157 LELKEIAIDryKKLLREKIDEGVQIIEKVEIVHQEVEIPDRSTEEQLRKTEVKLKELESEMRKLK----AKRAEIVKNDD 1232
Cdd:pfam02463 470 SEDLLKETQ--LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGdlgvAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1233 EQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNNEEEVEQLPKSAKSEKVRRLEEEMQLLQELVAKSDSKD-GENMRQK 1311
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkRAKVVEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1312 TEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSR 1391
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1392 LKQTVERRDTKNEPDEWERRKRQDEIIASLKEKLKKRDIAEKDYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLKAND 1471
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1472 PSVIKLQLNKEWKEKLDVLEANITKKNEELTACNRTLLRLKSELETNRKRHASEIEKIRVDNNSNVQKEVKRAREEVKKA 1551
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1552 MTVIKPQMSTVEIQADLLEKRHSGSTKSHRSEtvshnkiELSTISSSSSSISSPASSSKSHRSKTLKSISRDSILEERRL 1631
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEK-------KELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 373220161 1632 SQKSFDEQPNIPapksdtSDYYQLRESLQMTQERLIESQEKLIQMERDYSSLHEKFDRLKLRFDR 1696
Cdd:pfam02463 941 LLEEADEKEKEE------NNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER 999
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
81-497 |
2.85e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 81 EKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAFRAQIDSLKEENRQLQQSNRDRDREMADQRDRFENLASRVDTLT 160
Cdd:PRK02224 227 EQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 161 RERDALSEHKAQLEDTIRELNRRLS--------AKTEDTGAEWESKKLKLRN----EQVLTISRQMQAVVSQNEELREEI 228
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEecrvaaqaHNEEAESLREDADDLEERAeelrEEAAELESELEEAREAVEDRREEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 229 DRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILP--EELVEHVSQCISAAETMLSGRPIDKVNF 306
Cdd:PRK02224 387 EELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtaRERVEEAEALLEAGKCPECGQPVEGSPH 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 307 LIEVGDLLAPKFLNEDDKKALEDATGLTEAE-EQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRtgEKEQELEQ 385
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERlERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR--ERAEELRE 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 386 LKKELVDATTLARNLFGEAMSEV-PGQDPTMTLQMRILQLEHSIEQLNDEKEKQKKVmEELQFTIEQKDENNgEVLSELN 464
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAeEAREEVAELNSKLAELKERIESLERIRTLLAAI-ADAEDEIERLREKR-EALAELN 622
|
410 420 430
....*....|....*....|....*....|...
gi 373220161 465 RLKDAKFGSAREEITRLEKqmKFRDEQIGKLQQ 497
Cdd:PRK02224 623 DERRERLAEKRERKRELEA--EFDEARIEEARE 653
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-367 |
3.73e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 62 FTAAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKadvgdsteafRAQIDSLKEENRQLQQSNRDRDRE 141
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----------EEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 142 MADQRDRFENLasrVDTLTRERDALSEHKAQLEDTIRELNrRLSAKTEDTGAEWESKKLKLRNEQvltisRQMQAVVSQN 221
Cdd:TIGR02168 304 KQILRERLANL---ERQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELEELE-----AELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 222 EELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEHVSQCISAAETMLS---G 298
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEelqE 454
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 373220161 299 RPIDKVNFLIEVGDLLAPKFLNEDDKKAledatGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKM 367
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAER-----ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-528 |
9.63e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 9.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 65 AEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAFRAQI----DSLKEENRQLQQSNRDRDR 140
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeealLEAEAELAEAEEELEELAE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 141 EMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEDtgAEWESKKLKLRNEQVLTISRQMQAVVSQ 220
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE--EEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 221 NEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEHVSQCISAAETMLSGRP 300
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 301 IDKVNFLIEVGDLLAPKFLNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRTGEKE 380
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 381 QELEQLKKELVD---ATTLARNLFGEAMSEVPGQDPTMTLQMRILQLEHSIEQLNDEKEKQKKVMEELQFTIEQKDENng 457
Cdd:COG1196 625 RTLVAARLEAALrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE-- 702
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 373220161 458 evLSELNRLKDAKFGSAREEITRLEKQMKFRDEQIGKLQQHCTLLQVELGRYAEGTYEPIVKPSLPRRIRR 528
Cdd:COG1196 703 --EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1188-1550 |
1.39e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.82 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1188 VHQEVEIPDRSTEEQLRKTEVKLKELES-EMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLN 1266
Cdd:PLN02939 50 RGKNIAPKQRSSNSKLQSNTDENGQLENtSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQ 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1267 NEEEVEQLpKSAKSEKVRRLEEEMQLLQELvaKSDSKDGENMRQKTEIRDLkariqRLTKTNKELLVTCE-----QIKED 1341
Cdd:PLN02939 130 LEDLVGMI-QNAEKNILLLNQARLQALEDL--EKILTEKEALQGKINILEM-----RLSETDARIKLAAQekihvEILEE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1342 ALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTknepdeweRRKRQDEIIASL 1421
Cdd:PLN02939 202 QLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFK--------LEKERSLLDASL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1422 KEkLKKRDIAEKDYLEKLK--KREMVIETMRNDQGLrsseierLQRKLKANDPSVIKLQLNKEWKEKLDVLEANITKKNE 1499
Cdd:PLN02939 274 RE-LESKFIVAQEDVSKLSplQYDCWWEKVENLQDL-------LDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANV 345
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 373220161 1500 ELTACNRTLL---RLKSELETNRKRHASEIEKIRVDNNSNV--QKEVKRAREEVKK 1550
Cdd:PLN02939 346 SKFSSYKVELlqqKLKLLEERLQASDHEIHSYIQLYQESIKefQDTLSKLKEESKK 401
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
168-509 |
1.52e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 168 EHKAQLEDTIRELNRRLsaKTEDTGAEWESKKLKLRNEQvltisRQMQAVVSQN--EELREEIDRVSYALEEATRIIEQS 245
Cdd:TIGR02168 186 ENLDRLEDILNELERQL--KSLERQAEKAERYKELKAEL-----RELELALLVLrlEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 246 AVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEelvehVSQCISAAET---MLSGRPIDKVNFLIEVGDLLApkflnED 322
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYA-----LANEISRLEQqkqILRERLANLERQLEELEAQLE-----EL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 323 DKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESnkmrtmirEDRTGEKEQELEQLKKELVDattlARNLFG 402
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL--------ESRLEELEEQLETLRSKVAQ----LELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 403 EAMSEVPGQDPTMT-LQMRILQLEHSIEQLNDEKEKQKkvMEELQFTIEQKDENNGEVLSELNRLKdAKFGSAREEITRL 481
Cdd:TIGR02168 397 SLNNEIERLEARLErLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLE-EALEELREELEEA 473
|
330 340
....*....|....*....|....*...
gi 373220161 482 EKQMKFRDEQIGKLQQHCTLLQVELGRY 509
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENL 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-486 |
2.25e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 138 RDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRL-SAKTEDTGAEWESKKLKLRNEQVLTISRQMQA 216
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELeELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 217 VVS----QNEELREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRI----EELFNQNRRLTQIlpEELVEHVSQC 288
Cdd:TIGR02168 755 ELTeleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALdelrAELTLLNEEAANL--RERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 289 ISAAETMLsgrpidkvnflievgdllapKFLNEDDKKALEDATGLTEA-EEQKEKLERAEDRVKGLQDELNAVVEESNKM 367
Cdd:TIGR02168 833 IAATERRL--------------------EDLEEQIEELSEDIESLAAEiEELEELIEELESELEALLNERASLEEALALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 368 RTmiREDRTGEKEQELEQLKKELVDATTLARNLFGEamsevpgqdptmtLQMRILQLEHSIEQLndekekQKKVMEELQF 447
Cdd:TIGR02168 893 RS--ELEELSEELRELESKRSELRRELEELREKLAQ-------------LELRLEGLEVRIDNL------QERLSEEYSL 951
|
330 340 350
....*....|....*....|....*....|....*....
gi 373220161 448 TieqkdennGEVLSELNRLKDAKFGSAREEITRLEKQMK 486
Cdd:TIGR02168 952 T--------LEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
161-496 |
2.78e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 161 RERDALSEHKAQLEDTIRELNRRLS--AKTEDTGAEWESKKLKLRNEQVLTISRQMQAVVSQNEELREEIDRVSYALEEA 238
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLErlRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 239 TRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEHVSQCISAaetmlsgrpIDKVNFLIEVGDLLAPKF 318
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS---------IAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 319 LNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIRE--DRTGEKEQELEQLKKELVDATTL 396
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 397 ARNLfgeamsevpgQDPTMTLQMRILQLEHSIEQLNDEKEKQKKVMEELQFTIEQKDENNGEVLSELNRLKDAKFgSARE 476
Cdd:TIGR02169 408 LDRL----------QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY-DLKE 476
|
330 340
....*....|....*....|
gi 373220161 477 EITRLEKQMKFRDEQIGKLQ 496
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAE 496
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1133-1407 |
2.97e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1133 DAFENRIKEIKASAQLavqgyKEQLELKEIAIDRYKKLLREKIDEgvqIIEKVEIVHQEVEipdrsteEQLRKTEVKLKE 1212
Cdd:PRK05771 47 KLRSLLTKLSEALDKL-----RSYLPKLNPLREEKKKVSVKSLEE---LIKDVEEELEKIE-------KEIKELEEEISE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1213 LESEMRKLKAKRaeivknddeqddvsERIERFKEFlDEEVQTEWEYPQVSSRL-----NNEEEVEQLPKSAKSEKVRRLE 1287
Cdd:PRK05771 112 LENEIKELEQEI--------------ERLEPWGNF-DLDLSLLLGFKYVSVFVgtvpeDKLEELKLESDVENVEYISTDK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1288 EEMQLLQeLVAKSDSKDGENMRQKTEIRDL----KARIQRLTKTNKELLVTCEQIKEDALAELSTFrrNNENSDERRMTD 1363
Cdd:PRK05771 177 GYVYVVV-VVLKELSDEVEEELKKLGFERLeleeEGTPSELIREIKEELEEIEKERESLLEELKEL--AKKYLEELLALY 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 373220161 1364 LRVE--------LDRLRTTNRTL-------RNANEEMKNELSRL---KQTVERRDTKNEPDE 1407
Cdd:PRK05771 254 EYLEieleraeaLSKFLKTDKTFaiegwvpEDRVKKLKELIDKAtggSAYVEFVEPDEEEEE 315
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1198-1395 |
5.70e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 5.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1198 STEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTeweyPQVSSRL-NNEEEVEQLPK 1276
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV----ASAEREIaELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1277 SakSEKVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTFRRNNENS 1356
Cdd:COG4913 683 S--SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG 760
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 373220161 1357 DERRmTDLRVEL-DRLRTTNRTLRNANEEMKNELSRLKQT 1395
Cdd:COG4913 761 DAVE-RELRENLeERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
812-1324 |
6.24e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 812 EAELEARENMLKKMIDVVSDQSDFWNQESAMLQAENEELKKFIEDVENESDLKSVLGAVERRLLSTIRELRENEREYLRE 891
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 892 KKKSRgndIESSRDSERLRQERVALINVIIVLQRENKTLRDQAVGtvSLQQLELLRSNIFQARQKEAEIAAKMENIDKLK 971
Cdd:COG1196 370 AEAEL---AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA--LLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 972 EESETEMLRIRALRTANEVLSNFDGHEmQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMVHLKEQRVAELNDEMRELK 1051
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEE-AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1052 QWNLELITTLENIKTFKGERRES--QHIKPEISLKPRESIAVDQLEDSMDKESDYEMDIKSETSSSEASSDRIIVRTIVQ 1129
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1130 DNVDAFENRIKEIKASAQLAVQgykeqlELKEIAIDRYKKLLREKIDEGVQIIEKVEIVHQEVEIPDRSTEEQLRKTEVK 1209
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGR------TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1210 LKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEvqteweypqvssrLNNEEEVEQLPKSAKSEKVRRLEEE 1289
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE-------------ELEEEALEEQLEAEREELLEELLEE 744
|
490 500 510
....*....|....*....|....*....|....*
gi 373220161 1290 MQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRL 1324
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1197-1394 |
6.80e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1197 RSTEEQLRKTEVKLKELEsemrKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEypQVSSRLNNEEEVEQLPK 1276
Cdd:COG4913 238 ERAHEALEDAREQIELLE----PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE--AELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1277 SAKSEKVRRLEEEMQLLQELVAKSDSKDGENMRQktEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTFRRNNENS 1356
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGNGGDRLEQLER--EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 373220161 1357 DERRMT------DLRVELDRLRTTNRTLRNANEEMKNELSRLKQ 1394
Cdd:COG4913 390 AALLEAleeeleALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
843-1427 |
8.18e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 843 LQAENEELKKFIEDVENEsdlksvlgaveRRLLSTIRELRENEREYLREKKKSRGNDIESSRDSERLRQERVA-LINVII 921
Cdd:COG1196 237 LEAELEELEAELEELEAE-----------LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELArLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 922 VLQRENKTLRDQAVGTvsLQQLELLRSNIFQARQKEAEIAAKMENIDKLKEESETEMLRIRALRTANEvlsnfdghemqp 1001
Cdd:COG1196 306 RLEERRRELEERLEEL--EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE------------ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1002 qgnNEVAERQLQLAYFTSSQQSAKAKQFERMVHLKEQRvAELNDEMRELKQWNLELITTLENIKTFKGERRESQHikpei 1081
Cdd:COG1196 372 ---AELAEAEEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALAELEEEEEEEEE----- 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1082 slkpRESIAVDQLEDSMDKESDYEMDIKSETSSSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELKE 1161
Cdd:COG1196 443 ----ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1162 IAidrykkLLREKIDEGVQIIEKVEIVhqEVEIPDRSTEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQD---DVS 1238
Cdd:COG1196 519 LR------GLAGAVAVLIGVEAAYEAA--LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAraaLAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1239 ERIERFKEFLDEEVQTEWEYPQVSSRLNNEEEVEQLPKSAKSEKVRRLEEEmqLLQELVAKSDSKDGENMRQKTEIRDLK 1318
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT--LAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1319 ARIQRLTKTNKELLVTCEQIKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVER 1398
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590
....*....|....*....|....*....|
gi 373220161 1399 RDT-KNEPDEWERRKRQDEIIASLKEKLKK 1427
Cdd:COG1196 749 EEEaLEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
146-764 |
9.61e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 9.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 146 RDRFENLASRVDTLTRERDALSEHKA-QLEDTIRELNRRLSAKtedtgaEWESKKLKLRNEQVLTISRQMQAVVSQNEEL 224
Cdd:COG1196 192 EDILGELERQLEPLERQAEKAERYRElKEELKELEAELLLLKL------RELEAELEELEAELEELEAELEELEAELAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 225 REEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIEELFNQNRRLTQILPEELVEhvsqcisaaetmlsgrpidkv 304
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE--------------------- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 305 nflievgdllapkfLNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRTGEKEQELE 384
Cdd:COG1196 325 --------------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 385 QLKKELVDATTLARNLFGEAmsevpgqdptmTLQMRILQLEHSIEQLNDEKEKQKKVMEELQFTIEQKDENNGEVLSELN 464
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEE-----------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 465 RLKDAKFGSAREEITRLEKQMKFRDEQIGKLQQHctLLQVELGRYAEGTYEPIVKPSLPRRIRRPDMLLATKTVKPEIQK 544
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 545 IDSPVAPSSPLKPSPRVIEDEPRNA---------------------PNAPNPKEPPRFVHSGDYSDIAQQAVLISNLYYE 603
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAieylkaakagratflpldkirARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 604 LMQLLEEISYKDEKLVEIHKSWKSTQKSYQEmkAQLEMAYGEIQSLKKENLMIEERTLEELKQTESVELQRLVESINVEG 683
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 684 SEMERRLGEATRMLVTERMERMRFTRQCTILRTKTERLEEATRKSKEMLRTKELNAQRAIGRLKYEVETTTIEIGRLQTR 763
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
.
gi 373220161 764 L 764
Cdd:COG1196 776 I 776
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
63-446 |
9.90e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 63 TAAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRIT----------SKADVGDST-EAFRAQIDSLKEENRQL 131
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADdleeraeelrEEAAELESElEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 132 QQSNRDRDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRL--------SAKTEDTGAEWESK----K 199
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVeeaealleAGKCPECGQPVEGSphveT 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 200 LKLRNEQVLTISRQMQAVVSQNEELREEIDRVSYALEEATRI------IEQSAVRYTEMTNKLEISQLRIEELfnqnRRL 273
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIerleerREDLEELIAERRETIEEKRERAEEL----RER 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 274 TQILPEELVEHVSQCISAAETMLSGRpidkvnflIEVGDLLAPKFLNEDDKKALED-ATGLTEAEEQKEKLERAEDRVKG 352
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAR--------EEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLREKREA 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 353 LQDELNAVVEESNKMRTMIREDRTGEKEQELEQLKKELVDATTLARNLFGEAMSEVPGQDptmTLQMRILQLEHSIEQLN 432
Cdd:PRK02224 618 LAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERD---DLQAEIGAVENELEELE 694
|
410
....*....|....
gi 373220161 433 DEKEKQKKVMEELQ 446
Cdd:PRK02224 695 ELRERREALENRVE 708
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1202-1556 |
1.04e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1202 QLRKTEVKLKELESEMRKLKAKrAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNN-EEEVEQLPK---- 1276
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSE-ISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlNEQISQLKKeltn 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1277 --SAKSEKVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDLKARIQRLTKTNKELLVTCEQIKEdalaelstfrrnNE 1354
Cdd:TIGR04523 354 seSENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ------------EK 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1355 NSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEPDEWERRKRQDEIIASLKE------KLKKR 1428
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKElkskekELKKL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1429 DIAEKDYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLKANDPSVIKLQLNKEW---KEKLDVLEANITK---KNEELT 1502
Cdd:TIGR04523 502 NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKenlEKEIDEKNKEIEElkqTQKSLK 581
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 373220161 1503 ACNRTLLRLKSELETNRKRHASEIEKIRVdNNSNVQKEVKRAREEVKKAMTVIK 1556
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIKEIEEKEK-KISSLEKELEKAKKENEKLSSIIK 634
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
99-480 |
1.61e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 99 SLRDRITSKADVGDSTEAFRAQIDSLKEENRQLQQSNRDRDREMADQRDRFENLASRVDTLTRERDALSEHKAQLEDTIR 178
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 179 ELNRRLSAKTEDTGAEweskklklrneqvltiSRQMQAVVSQNEELREEIDRVSYALEEatriIEQSavrytemtnkleI 258
Cdd:TIGR02169 741 ELEEDLSSLEQEIENV----------------KSELKELEARIEELEEDLHKLEEALND----LEAR------------L 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 259 SQLRIEELFNQNRRLtqilpEELVEHVSQCISAAETMLSGRPIDKVNFLIEVGDLLAPKFLNEDDKKALEDATGL--TEA 336
Cdd:TIGR02169 789 SHSRIPEIQAELSKL-----EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENlnGKK 863
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 337 EEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRTGEKEQELEQLKKELVDATTLAR--NLFGE---------AM 405
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKleALEEElseiedpkgED 943
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 406 SEVPGQDPTM-TLQMRILQLEHSIEQLND----------EKEKQKKVMEELQFTIEQKDENNGEVLSELNRLKDAKFGSA 474
Cdd:TIGR02169 944 EEIPEEELSLeDVQAELQRVEEEIRALEPvnmlaiqeyeEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
....*.
gi 373220161 475 REEITR 480
Cdd:TIGR02169 1024 FEAINE 1029
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
89-513 |
2.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 89 QKTALNL-EIESLRDRITSKADVGDSTEAFRAQIDSLKEENRQLQQ--SNRDRDREMADQRDRFENLASRVDTLTRERDA 165
Cdd:COG4717 64 RKPELNLkELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAelEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 166 LSEHKAQLEDTIRELNRRLSAKT--EDTGAEWESKKLKLRNEQVLTISRQMQAVVSQNEELREEIDRVSYALEEATRIIE 243
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEelEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 244 QSAVRYTEMTNKLEISQL--RIEELFNQNRRLTQILpeeLVEHVSQCISAAETMLSGRPIDKVNFLIEVGDLLA---PKF 318
Cdd:COG4717 224 ELEEELEQLENELEAAALeeRLKEARLLLLIAAALL---ALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLArekASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 319 LNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDRTGEKEQELEQLKKELvdattlaR 398
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI-------A 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 399 NLFGEAMSEvpgqdptmtlqmrilqLEHSIEQLNDEKEKQKKVMEELQFTIEQKDENNGEVLSELNRLKDAkfgSAREEI 478
Cdd:COG4717 374 ALLAEAGVE----------------DEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE---ELEEEL 434
|
410 420 430
....*....|....*....|....*....|....*
gi 373220161 479 TRLEKQMKFRDEQIGKLQQHCTLLQVELGRYAEGT 513
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
954-1516 |
2.72e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 954 RQKEAEIAAKMENIDKLKEESETEMLRIRALRTANEVLsnfdghEMQPQGNNEVAERQLQLAYFTSSQQSAKAKQFERMV 1033
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEEL------RLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1034 HLKEQRVAELNDEMRELKQWNLELITTLENIKTFKGERRESQHIkpEISLKPRESIAVDQLEDSMDKESDYEMDIKSETS 1113
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE--LEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1114 SSEASSDRIIVRTIVQDNVDAFENRIKEIKASAQLAVQGYKEQLELKEIAIDRYKKLLREKIDEGVQIIEKVEIVHQEVE 1193
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1194 IPDRSTEEQLRKTEVKLKELESEMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYPQVSSRLNNEEEVEQ 1273
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1274 LPKSAKSEKVRRLEEEMQLLQELVAKSDSKDGENMRQKTEIRDlkARIQRLTKTNKELLVTCEQIKEDALAELstfRRNN 1353
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA--AALARGAIGAAVDLVASDLREADARYYV---LGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1354 ENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEpdewERRKRQDEIIASLKEKLKKRDIAEK 1433
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA----ALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1434 DYLEKLKKREMVIETMRNDQGLRSSEIERLQRKLKANDpsvIKLQLNKEWKEKLDVLEANITKKNEELTACNRTLLRLKS 1513
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE---ELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
...
gi 373220161 1514 ELE 1516
Cdd:COG1196 775 EIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
64-431 |
7.00e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 64 AAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKADVGDSTEAFRAQIDSLKEENRQLQQSNRDRDREMA 143
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 144 DQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRRLSAKTEDTGAEWESKKLKLRNEQVLTISRQMQAVVSQNEE 223
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 224 -LREEIDRVSYALEEATRIIEQSAVRYTEMTNKLEISQLRIE-------ELFNQNRRLTQILPEELVEHVSQCISAAETM 295
Cdd:COG1196 558 vAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavdlvasDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 296 LSGRPIDKVNFLIEVGDLLAPKFLNEDDKKALEDATGLTEAEEQKEKLERAEDRVKGLQDELNAVVEESNKMRTMIREDR 375
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 373220161 376 TGEKEQELEQLKKELVDATTLARNL------FGEAMSEVPGQDPTMTLQMRILQLEHSIEQL 431
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLeeeellEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
64-278 |
7.29e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 64 AAEELRNVAEQEAVTMAEKEDQWEEQKTALNLEIESLRDRITSKADVgdsTEAFRAQIDSLKEENRQLQQSNRDRDREMA 143
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE---LEELESRLEELEEQLETLRSKVAQLELQIA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 144 DQRDRFENLASRVDTLTRERDALSEHKAQLEDTIRELNRR-LSAKTEDTGAEWESKKLKLRneqvltisrqmqAVVSQNE 222
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEELE------------RLEEALE 464
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 373220161 223 ELREEIDRVSYALEEATRIIEQSAVRYT---EMTNKLEISQLRIEELFNQNRRLTQILP 278
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDsleRLQENLEGFSEGVKALLKNQSGLSGILG 523
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1351-1450 |
7.63e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1351 RNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVERRDTKNEPDEWERRK--RQDEIIASLKEKLKKr 1428
Cdd:COG2433 405 ERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREisRLDREIERLERELEE- 483
|
90 100
....*....|....*....|..
gi 373220161 1429 diaEKDYLEKLKKREMVIETMR 1450
Cdd:COG2433 484 ---ERERIEELKRKLERLKELW 502
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
79-498 |
8.03e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 79 MAEKEDQWEEQKTALNLEIEslrdriTSKADVgdstEAFRAQIDSLKEENRQLQQSN---RDRDREMADQ-RDRFENLAS 154
Cdd:pfam12128 292 LRTLDDQWKEKRDELNGELS------AADAAV----AKDRSELEALEDQHGAFLDADietAAADQEQLPSwQSELENLEE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 155 RVDTLT------------RERDALSEHKAQLE------DTIRELNRRLSAKTEDTGAEWESKKLKLRNEQVLTISRQMQA 216
Cdd:pfam12128 362 RLKALTgkhqdvtakynrRRSKIKEQNNRDIAgikdklAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 217 VVSQNEELREEIDRVSYALEEATRiIEQSAVRYTEMTNKLEISQLRIEELF-----------NQNRRLTQIlpEELVEHV 285
Cdd:pfam12128 442 LKSRLGELKLRLNQATATPELLLQ-LENFDERIERAREEQEAANAEVERLQselrqarkrrdQASEALRQA--SRRLEER 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 286 SQCISAAETMLSGRPIDKVNFLIE--------VGDLLAPKFLNEDDKKALEDATGLTEaeeqkekleraEDRVKGLQDEL 357
Cdd:pfam12128 519 QSALDELELQLFPQAGTLLHFLRKeapdweqsIGKVISPELLHRTDLDPEVWDGSVGG-----------ELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 358 NAV-VEESNKMRTMIREdrtgekeqELEQLKKELVDAttlarnlfgeamsevpgqdptmtlQMRILQLEHSIEQLNDEKE 436
Cdd:pfam12128 588 KRIdVPEWAASEEELRE--------RLDKAEEALQSA------------------------REKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 373220161 437 KQKKVMEELQFTIEQKDENNGEVLSELNRLKDAK-------FGSAREEITRLEKQMKFRDEQIGKLQQH 498
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLFDEKQSEKDKKnkalaerKDSANERLNSLEAQLKQLDKKHQAWLEE 704
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1125-1401 |
8.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1125 RTIVQDNVDAFENRIKEIKASAQLA------VQGYKEQLELKEIAIDRYKKLLREKIDEGVQIIE--KVEIVHQEVEIPD 1196
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkigeIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEnvKSELKELEARIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1197 RstEEQLRKTEVKLKELES------------EMRKLKAKRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEY-PQVSS 1263
Cdd:TIGR02169 770 L--EEDLHKLEEALNDLEArlshsripeiqaELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQrIDLKE 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1264 RLNNEEEVEQLPKSAKSEKVRRLEEEMQLLQELVAKSD--SKDGENMR-----QKTEIRDLKARIQRLTKTNKELLVTCE 1336
Cdd:TIGR02169 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdlKKERDELEaqlreLERKIEELEAQIEKKRKRLSELKAKLE 927
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 373220161 1337 qIKEDALAELSTFRRNNENSDERRMT--DLRVELDRLRTTNRTLRNAN----EEMKNELSRLKQTVERRDT 1401
Cdd:TIGR02169 928 -ALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNmlaiQEYEEVLKRLDELKEKRAK 997
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1200-1395 |
8.96e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 8.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1200 EEQLRKTEVKLKELESEMRKLKAKrAEIVKNDDEQDDVSERIERFKEfldEEVQTEWEYPQVSSRLNN-----EEEVEQL 1274
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQK-NGLVDLSEEAKLLLQQLSELES---QLAEARAELAEAEARLAAlraqlGSGPDAL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220161 1275 PKSAKSEKVRRLEEEMQLLQELVAKSDSKDGEN----MRQKTEIRDLKARIQRLTKTNKELLVTCEQIKEDALAELSTfR 1350
Cdd:COG3206 257 PELLQSPVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA-Q 335
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 373220161 1351 RNNENSDERRMTDLRVELDRLrttNRTLRNANEEMKNELSRLKQT 1395
Cdd:COG3206 336 LAQLEARLAELPELEAELRRL---EREVEVARELYESLLQRLEEA 377
|
|
| |
