|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
398-672 |
8.55e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 113.67 E-value: 8.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 398 APLAIELEMTKAGE-LMKNGDIEGAIEVLKVFNSQDSKTASAAAN--NLcmlrFLQGGRrLVDAQQYADQALSIDRYNAH 474
Cdd:COG2956 3 LPVAAALGWYFKGLnYLLNGQPDKAIDLLEEALELDPETVEAHLAlgNL----YRRRGE-YDRAIRIHQKLLERDPDRAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 475 AQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESL 554
Cdd:COG2956 78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 555 EDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEK 634
Cdd:COG2956 158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRK 237
|
250 260 270
....*....|....*....|....*....|....*...
gi 373220556 635 AALMQPNVSKWqMMIASCLRRTGNYQRAFELYRQIHRK 672
Cdd:COG2956 238 ALELDPSDDLL-LALADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
479-709 |
1.32e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.90 E-value: 1.32e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 479 QGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSA 558
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 559 QAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALM 638
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 373220556 639 QPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVRIAGDLGmtEYKEYKDKLEKAEKIN 709
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG--DPEEALELLRKALELD 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
458-694 |
8.97e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 110.59 E-value: 8.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 458 AQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGIL 537
Cdd:COG2956 27 AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 538 LNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQcHYD-SYRYFPSNLETVEWLA 616
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE-ALEkALKLDPDCARALLLLA 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 373220556 617 SYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLkFLVRIAGDLGMTE 694
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLE 262
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
204-720 |
2.74e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 112.48 E-value: 2.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 204 EALNTYEIIVRNKMFPNSGRLkvNIGNIHFRKREFTKALKYYRMALDQVPSIQKDTRIKILnnigVTFvRMGSYDDAIST 283
Cdd:TIGR02917 211 LALAAYRKAIALRPNNIAVLL--ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL----VDF-QKKNYEDARET 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 284 FDHCVEENPNFITALNLI-LVAFCIQDAEKMREAFVKMIDIpgFPDDDY------------------------MKEKDDD 338
Cdd:TIGR02917 284 LQDALKSAPEYLPALLLAgASEYQLGNLEQAYQYLNQILKY--APNSHQarrllasiqlrlgrvdeaiatlspALGLDPD 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 339 DVLLNQTLNSDMLKNwekrnkSDAEKAI--ITAVKIISPVIAPDY---AIGY------EWCLESLKQSVhaplAIELEMT 407
Cdd:TIGR02917 362 DPAALSLLGEAYLAL------GDFEKAAeyLAKATELDPENAAARtqlGISKlsqgdpSEAIADLETAA----QLDPELG 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 408 KAGEL-----MKNGDIEGAIEVLKvfNSQDSKTASAAANNLcMLRFLQGGRRLVDAQQYADQALSIDRYNAHAQVNQGNI 482
Cdd:TIGR02917 432 RADLLlilsyLRSGQFDKALAAAK--KLEKKQPDNASLHNL-LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 483 AYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIE 562
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 563 LYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNV 642
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 373220556 643 SKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDldclKFLVRIAGDLGMTEyKEYKDKLEKAEKinqlRLQRESDSS 720
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA----ALGFELEGDLYLRQ-KDYPAAIQAYRK----ALKRAPSSQ 737
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
466-710 |
9.87e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.85 E-value: 9.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 466 LSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLV 545
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 546 QLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFS 625
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 626 EKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVRIAGDLGMTEYKEYKDKLEKA 705
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
....*
gi 373220556 706 EKINQ 710
Cdd:COG0457 241 YQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
439-637 |
7.38e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.54 E-value: 7.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 439 AANNLCMLRFLQGgrRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAK 518
Cdd:COG0457 10 AYNNLGLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 519 AQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQcH 598
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE-L 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 373220556 599 YDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAAL 637
Cdd:COG0457 167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
503-728 |
1.17e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.07 E-value: 1.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 503 DASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLA 582
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 583 DLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRA 662
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 373220556 663 FELYRQIHRKFPQDLDCLKFLVRIAGDLGMTEYKEYKDKLEKAEKINQLRLQRESDSSQGKRHSAN 728
Cdd:COG0457 164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
436-673 |
6.83e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.59 E-value: 6.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 436 ASAAANNLCMLRFLQGGRRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGL 515
Cdd:COG3914 41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 516 TAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAF 595
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 596 QCHYDSYRYFPSNLEtvewLASYYL-------ETQFSEKSINYLEKAALMQPNVSKWQMmiasclrrtgNYQRAF--ELY 666
Cdd:COG3914 201 AAYRRALELDPDNAD----AHSNLLfalrqacDWEVYDRFEELLAALARGPSELSPFAL----------LYLPDDdpAEL 266
|
....*..
gi 373220556 667 RQIHRKF 673
Cdd:COG3914 267 LALARAW 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
190-567 |
1.77e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.24 E-value: 1.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 190 FNLAQQYEANDMTNEALNTYEIIVRNKmfPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQvpsiqKDTRIKILNNIGV 269
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLER-----DPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 270 TFVRMGSYDDAISTFDHCVEENPNFITALNLILVAfciqdaekmreafvkmidipgfpdddYMKEKDdddvllnqtlnsd 349
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI--------------------------YEQEGD------------- 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 350 mlknWekrnksdaEKAIITAVKIISpvIAPDYAIGYewcleslkqsvhaplaIELemtkAGELMKNGDIEGAIEVLKvfn 429
Cdd:COG2956 126 ----W--------EKAIEVLERLLK--LGPENAHAY----------------CEL----AELYLEQGDYDEAIEALE--- 168
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 430 sqdsktasaaannlcmlrflqggrrlvdaqqyadQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQA 509
Cdd:COG2956 169 ----------------------------------KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 373220556 510 LFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVqLASIYESLEDSAQAIELYSQA 567
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQ 271
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
454-574 |
3.24e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 454 RLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKL 533
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 373220556 534 HGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPND 574
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
412-637 |
9.71e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.74 E-value: 9.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 412 LMKNGDIEGAIEVLKVFNSQDSKTASAAaNNLCMLRFLQGgrRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDK 491
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEAL-YNLGLAYLRLG--RYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 492 ALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLV 571
Cdd:COG0457 95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 373220556 572 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAAL 637
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
219-690 |
3.39e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 80.13 E-value: 3.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 219 PNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPsiqkdTRIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFITAL 298
Cdd:TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP-----RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 299 NLIL-VAFCIQDAEKMREAFVKMIDI-PGFPDDDY------MKEKDDD------DVLLNQTLNS------DMLKNWEKRN 358
Cdd:TIGR02917 197 LLKGdLLLSLGNIELALAAYRKAIALrPNNIAVLLalatilIEAGEFEeaekhaDALLKKAPNSplahylKALVDFQKKN 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 359 KSDAEKAIITAVKiispvIAPDYAIG-----------------YEWCLESLKQSVHAPLAIELemtKAGELMKNGDIEGA 421
Cdd:TIGR02917 277 YEDARETLQDALK-----SAPEYLPAlllagaseyqlgnleqaYQYLNQILKYAPNSHQARRL---LASIQLRLGRVDEA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 422 IEVLKVFNSQDSKtaSAAANNLCMLRFLQGGrRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALN 501
Cdd:TIGR02917 349 IATLSPALGLDPD--DPAALSLLGEAYLALG-DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 502 NDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKL 581
Cdd:TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 582 ADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQR 661
Cdd:TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585
|
490 500 510
....*....|....*....|....*....|..
gi 373220556 662 AFELYRQI---HRKFPQDLDCLKFLVRIAGDL 690
Cdd:TIGR02917 586 ALAILNEAadaAPDSPEAWLMLGRAQLAAGDL 617
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
473-594 |
1.83e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.99 E-value: 1.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 473 AHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYE 552
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 373220556 553 SLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQA 594
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
491-596 |
6.59e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.26 E-value: 6.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 491 KALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSL 570
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*.
gi 373220556 571 VPNDPAILSKLADLYDQEGDKSQAFQ 596
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
464-687 |
7.77e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 7.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 464 QALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQV 543
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 544 LVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQ 623
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 373220556 624 FSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVRIA 687
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
436-670 |
8.47e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.03 E-value: 8.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 436 ASAAANNLCMLRFLQGGRRLVDAQ-QYADQALSIDRYNAHAQVNQGNIAYMnGDLDKALNNYREALNNDASCVQALFNIG 514
Cdd:COG3914 14 AAALLAAAAAAELALAAELEAAALaAALGLALLLLAALAEAAAAALLALAA-GEAAAAAAALLLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 515 LTAKAQGNLEQALEFFYklhgillNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQA 594
Cdd:COG3914 93 RYEEALALYRRALALNP-------DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 373220556 595 FQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIH 670
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLA 241
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
541-676 |
4.46e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.14 E-value: 4.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 541 VQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYL 620
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 373220556 621 ETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQD 676
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
219-662 |
2.82e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.50 E-value: 2.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 219 PNSGRLKVNIGNIHFRKREFTKALKYYRMAL----DQVPSIQKDTRIKIlnnigvtfvRMGSYDDAISTFDHCVEENPNF 294
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALsiepDFFPAAANLARIDI---------QEGNPDDAIQRFEKVLTIDPKN 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 295 ITALNLIlvaFCIQDAEKMREAFVKMIDIPGfpdddymkEKDDDDVLLNQTLNSDMLKnwekrnKSDAEKAIITAVKIIS 374
Cdd:TIGR02917 533 LRAILAL---AGLYLRTGNEEEAVAWLEKAA--------ELNPQEIEPALALAQYYLG------KGQLKKALAILNEAAD 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 375 pvIAPDyaigyewcleslkqsvhAPLAIELemtKAGELMKNGDIEGAIEVLKVFNSQDSKTASAaannLCMLRFLQGGRR 454
Cdd:TIGR02917 596 --AAPD-----------------SPEAWLM---LGRAQLAAGDLNKAVSSFKKLLALQPDSALA----LLLLADAYAVMK 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 455 LVD-AQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYK- 532
Cdd:TIGR02917 650 NYAkAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKa 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 533 ------------LHGILL--------------------NNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSK 580
Cdd:TIGR02917 730 lkrapssqnaikLHRALLasgntaeavktleawlkthpNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNN 809
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 581 LADLYdQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQ 660
Cdd:TIGR02917 810 LAWLY-LELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888
|
..
gi 373220556 661 RA 662
Cdd:TIGR02917 889 EA 890
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
188-304 |
6.14e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.17 E-value: 6.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 188 VLFNLAQQYEANDMTNEALNTYEIIVRNKmfPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPsiqkdTRIKILNNI 267
Cdd:COG3914 114 ALFNLGNLLLALGRLEEALAALRRALALN--PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP-----DNAEALNNL 186
|
90 100 110
....*....|....*....|....*....|....*..
gi 373220556 268 GVTFVRMGSYDDAISTFDHCVEENPNFITALNLILVA 304
Cdd:COG3914 187 GNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
457-576 |
1.44e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 457 DAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGI 536
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 373220556 537 LLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPA 576
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
436-572 |
1.77e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.97 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 436 ASAAANNLCMLRFLQGGRRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGL 515
Cdd:COG5010 17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAL 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 516 TAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVP 572
Cdd:COG5010 97 LYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
188-328 |
2.46e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.56 E-value: 2.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 188 VLFNLAQQYEANDMTNEALNTYEIIVrnKMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNI 267
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKAL--ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-----DAEALNNL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 373220556 268 GVTFVRMGSYDDAISTFDHCVEENPNFITAL-NLILVAFCIQDAEKMREAFVKMIDI-PGFPD 328
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDDAEALyNLGLALLELGRYDEAIEAYERALELdPDDAD 145
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
189-331 |
5.74e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.70 E-value: 5.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 189 LFNLAQQYEANDMTNEALNTYEIIVRnkMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNIG 268
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALA--LNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD-----FAEAYLNLG 153
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 373220556 269 VTFVRMGSYDDAISTFDHCVEENPNFITAL-NLILVAFCIQDAEKMREAFVKMIDIPgfPDDDY 331
Cdd:COG3914 154 EALRRLGRLEEAIAALRRALELDPDNAEALnNLGNALQDLGRLEEAIAAYRRALELD--PDNAD 215
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
539-676 |
1.97e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 1.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 539 NNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAfqchydsyryfpsnletvewlasy 618
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEA------------------------ 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 373220556 619 yletqfseksINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQD 676
Cdd:COG4235 71 ----------EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
482-573 |
2.80e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 482 IAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFyKLHGILLNNVQVLVQLASIYESLEDSAQAI 561
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 373220556 562 ELYSQANSLVPN 573
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
454-594 |
3.68e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 3.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 454 RLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKL 533
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 373220556 534 HGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQA 594
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
454-533 |
6.29e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 6.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 454 RLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALnNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKL 533
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
454-530 |
1.70e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 1.70e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 454 RLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFF 530
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
188-323 |
2.58e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 188 VLFNLAQQYEANDMTNEALNTYEIIVrnKMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNI 267
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKAL--ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-----EPEARLNL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 268 GVTFVRMGSYDDAISTFDHCVEENPNFITA-LNLILVAFCIQDAEKMREAFVKMIDI 323
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKLDPEHPEAyLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
458-594 |
4.18e-08 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 57.02 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 458 AQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDA---SCVQALFNIgltAKAQgNLEQALEFFYKLH 534
Cdd:PRK11447 370 AERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgntNAVRGLANL---YRQQ-SPEKALAFIASLS 445
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 373220556 535 -------GILLNNVQV--LVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQA 594
Cdd:PRK11447 446 asqrrsiDDIERSLQNdrLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
188-321 |
2.45e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.19 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 188 VLFNLAQQYEANDMTNEALNTYEIIVrnKMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNI 267
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKAL--KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD-----YLPALPRL 218
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 373220556 268 GVTFVRMGSYDDAISTFDHCVEENPNFITALNLILVAFCIQDAEKMREAFVKMI 321
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
445-668 |
3.37e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.99 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 445 MLRFLQGgrRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQAlfnIGLT----AKAQ 520
Cdd:COG3071 24 LLALAEG--RYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELA---VLLTraelLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 521 GNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQ---ANSLVP------------------------- 572
Cdd:COG3071 99 GQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPAlrkHKALSAeeaqalerraylgllrqaardaeal 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 573 ------------NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSN-----------------LETVE-WLASY---- 618
Cdd:COG3071 179 kalwkalpraerRDPELAAAYARALIALGDHDEAERLLREALKRQWDPrlvrlygrlqggdpakqLKRAEkWLKKHpndp 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 373220556 619 ---------YLETQFSEKSINYLEKAALMQPNVSKWQMMiASCLRRTGNYQRAFELYRQ 668
Cdd:COG3071 259 dlllalgrlCLRNQLWGKAREYLEAALALRPSAEAYAEL-ARLLEQLGDPEEAAEHYRK 316
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
216-316 |
3.38e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 216 KMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSIqkdtrIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFI 295
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-----AEALYNLGLAYLRLGRYEEALADYEQALELDPDDA 76
|
90 100
....*....|....*....|.
gi 373220556 296 TALNLIlvAFCIQDAEKMREA 316
Cdd:COG0457 77 EALNNL--GLALQALGRYEEA 95
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
517-640 |
9.30e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 9.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 517 AKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQ 596
Cdd:COG5010 30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 373220556 597 CHYDSYRYFPSNLETVEWLASYYLETQFSEKSINYLEKAALMQP 640
Cdd:COG5010 110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
188-323 |
1.04e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.27 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 188 VLFNLAQQYEANDMTNEALNTYEIIVrnKMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNI 267
Cdd:COG2956 78 ALLELAQDYLKAGLLDRAEELLEKLL--ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE-----NAHAYCEL 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 268 GVTFVRMGSYDDAISTFDHCVEENPNFITA-LNLILVAFCIQDAEKMREAFVKMIDI 323
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCARAlLLLAELYLEQGDYEEAIAALERALEQ 207
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
550-641 |
1.14e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 550 IYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHyDSYRYFPSNLETVEWLASYYLETQFSEKSI 629
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 373220556 630 NYLEKAALMQPN 641
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
451-708 |
1.70e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.62 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 451 GGRRLVDAQQYADQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFF 530
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 531 YKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDP--AILSKLADLydQEGDKSQAFQCHYDSYRYFPSN 608
Cdd:TIGR02917 217 RKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPlaHYLKALVDF--QKKNYEDARETLQDALKSAPEY 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 609 LETVEWL-ASYYLETQFsEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVRIA 687
Cdd:TIGR02917 295 LPALLLAgASEYQLGNL-EQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373
|
250 260
....*....|....*....|.
gi 373220556 688 GDLGMteYKEYKDKLEKAEKI 708
Cdd:TIGR02917 374 LALGD--FEKAAEYLAKATEL 392
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
219-330 |
3.01e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 219 PNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPsiqkdTRIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFITAL 298
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP-----DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90 100 110
....*....|....*....|....*....|...
gi 373220556 299 NLI-LVAFCIQDAEKMREAFVKMIDIpgFPDDD 330
Cdd:COG4235 89 YLLgLAAFQQGDYAEAIAAWQKLLAL--LPADA 119
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
445-596 |
5.31e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 445 MLRFLQGGRRLVDAQQYADQALSIDRYNAHAQV-----NQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKA 519
Cdd:COG4785 40 ALADLALALAAAALAAAALAAERIDRALALPDLaqlyyERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLL 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 373220556 520 QGNLEQALEFFYKlhGILLN--NVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLaDLYDQEGDKSQAFQ 596
Cdd:COG4785 120 LGDYDAALEDFDR--ALELDpdYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL-YLAERKLDPEKALA 195
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
189-293 |
2.03e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 189 LFNLAQQYEANDMTNEALNTYEIIVRNKmfPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPsiqkdTRIKILNNIG 268
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLD--PDNADALLDLAEALLAAGDTEEAEELLERALALDP-----DNPEALYLLG 92
|
90 100
....*....|....*....|....*
gi 373220556 269 VTFVRMGSYDDAISTFDHCVEENPN 293
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
483-576 |
2.29e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 483 AYMNGDLDKALNNYREALN---NDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQV---LVQLASIYESLED 556
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGD 82
|
90 100
....*....|....*....|
gi 373220556 557 SAQAIELYSQANSLVPNDPA 576
Cdd:COG1729 83 YDKARATLEELIKKYPDSEA 102
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
483-573 |
2.51e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.43 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 483 AYMNGDLDKALNNYREALN-----NDAScvQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESL--- 554
Cdd:PRK02603 45 AQADGEYAEALENYEEALKleedpNDRS--YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRgek 122
|
90 100 110
....*....|....*....|....*....|
gi 373220556 555 ------EDSA-----QAIELYSQANSLVPN 573
Cdd:PRK02603 123 aeeagdQDEAealfdKAAEYWKQAIRLAPN 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
606-709 |
2.71e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 606 PSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVR 685
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|....
gi 373220556 686 IAGDLGmtEYKEYKDKLEKAEKIN 709
Cdd:COG4235 94 AAFQQG--DYAEAIAAWQKLLALL 115
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
469-533 |
3.28e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 3.28e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 373220556 469 DRYNAHAQVNQGNIAYMNGDLDKALNNYREALN---NDASCVQALFNIGLTAKAQGNLEQALEFFYKL 533
Cdd:COG1729 26 SPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGDYDKARATLEEL 93
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
473-530 |
3.69e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.76 E-value: 3.69e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 373220556 473 AHAQVNQGNIAYMNGDLDKALNNYREAL--------NNDASCVQALFNIGLTAKAQGNLEQALEFF 530
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELL 68
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
412-505 |
3.85e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 412 LMKNGDIEGAIEVLKVFNSQDSKTAsAAANNLCMLRFLQGgrRLVDAQQYaDQALSIDRYNAHAQVNQGNIAYMNGDLDK 491
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNA-DALNNLGLLLLEQG--RYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDE 77
|
90
....*....|....
gi 373220556 492 ALNNYREALNNDAS 505
Cdd:COG3063 78 ALAYLERALELDPS 91
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
478-532 |
4.64e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 44.66 E-value: 4.64e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 373220556 478 NQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGL-------TAKAQGNLEQALEFFYK 532
Cdd:PRK02603 77 NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAViyhkrgeKAEEAGDQDEAEALFDK 138
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
196-292 |
4.99e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 196 YEANDMTNEALNTYEIIVrnKMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNIGVTFVRMG 275
Cdd:COG5010 64 YNKLGDFEESLALLEQAL--QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD-----NPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 373220556 276 SYDDAISTFDHCVEENP 292
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
187-316 |
1.03e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.61 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 187 TVLFNLAQQYEANDMTNEALNTYEIIVRnkMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPSIqkdtrIKILNN 266
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALE--LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD-----ADALYN 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 373220556 267 IGVTFVRMGSYDDAISTFDHCVEENPNFITALNLILVAFCIQDAEKMREA 316
Cdd:COG0457 150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
231-323 |
1.10e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 231 IHFRKREFTKALKYYRMALDQVPSiqkdtRIKILNNIGVTFVRMGSYDDAIStFDHCVEENPNFITAL-NLILVAFCIQD 309
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-----NADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALlNLAELLLELGD 74
|
90
....*....|....
gi 373220556 310 AEKMREAFVKMIDI 323
Cdd:COG3063 75 YDEALAYLERALEL 88
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
223-289 |
1.92e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.92e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 223 RLKVNIGNIHFRKREFTKALKYYRMALD---QVPSIQKDTRIKILNNIGVTFVRMGSYDDAISTFDHCVE 289
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
193-298 |
2.26e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 193 AQQYEANDMTNEALNTYEIIVRNKMFPNSGRLKVNIGNIHFRKREFTKALKYYRMALDQVPsiqkdTRIKILNNIGVTFV 272
Cdd:COG4785 44 LALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYL 118
|
90 100
....*....|....*....|....*.
gi 373220556 273 RMGSYDDAISTFDHCVEENPNFITAL 298
Cdd:COG4785 119 LLGDYDAALEDFDRALELDPDYAYAY 144
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
463-567 |
2.46e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 463 DQALSIDRYNAHAQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQ 542
Cdd:COG4785 97 DQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
|
90 100
....*....|....*....|....*
gi 373220556 543 VLVQLAsIYESLEDSAQAIELYSQA 567
Cdd:COG4785 177 RALWLY-LAERKLDPEKALALLLED 200
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
502-704 |
3.85e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 42.71 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 502 NDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKL 581
Cdd:TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 582 AdlydqegdksqAFQCH---YDS-YRYF---------PSNLETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMM 648
Cdd:TIGR02521 106 G-----------TFLCQqgkYEQaMQQFeqaiedplyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 649 IASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVRIAGDLG-MTEYKEYKDKLEK 704
Cdd:TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGdVAAAQRYGAQLQK 231
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
237-305 |
3.93e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.97 E-value: 3.93e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 373220556 237 EFTKALKYYRMALdqvpSIQKDT--RIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFITALNLILVAF 305
Cdd:PRK02603 50 EYAEALENYEEAL----KLEEDPndRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
482-597 |
5.09e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 43.07 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 482 IAYMNGDLDKALNNYREAL-----NNDASCVQALFNIGLTAKAQGNLEQAL------EFFYKLHGILLNNVQVLVQLASI 550
Cdd:pfam17874 10 LAISKGDAERALELAEQALallpeDDLLARGLATFVLGEAYLCLGDLDAALqamreaEALARRADSPHVTLWALLQQGEI 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 373220556 551 YESLEDSAQAIELYSQANSLVP-----NDPA---ILSKLADLYDQEGDKSQAFQC 597
Cdd:pfam17874 90 LRAQGRLHQALETYQQALQLARdhglqHLPLhgfLLVGLADLLYEWNDLEEAEQH 144
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
514-605 |
5.88e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.58 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 514 GLTAKAQGNLEQALEFFY---KLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGD 590
Cdd:PRK02603 42 GMSAQADGEYAEALENYEealKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
|
90
....*....|....*
gi 373220556 591 KSQAFQCHYDSYRYF 605
Cdd:PRK02603 122 KAEEAGDQDEAEALF 136
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
433-594 |
6.03e-04 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 43.36 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 433 SKTASAAANNLCMLRFLQGG--RRLVDAQQYAdqALSIDRYNAhaqvnqgniaymnGDLDKALNNYREALNNDAScVQAL 510
Cdd:PRK09782 549 ANTAQAAGNGAARDRWLQQAeqRGLGDNALYW--WLHAQRYIP-------------GQPELALNDLTRSLNIAPS-ANAY 612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 511 FNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGD 590
Cdd:PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692
|
....
gi 373220556 591 KSQA 594
Cdd:PRK09782 693 MAAT 696
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
522-674 |
9.63e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 9.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 522 NLEQALEFfyklhgilLNNVQVLVQLASIYESLEDSAQAIELYSQA-NSLVPNDPAILSKLADLYDQEGDKSQAfqchyd 600
Cdd:COG4700 78 ELEKALEF--------ADTVQNRVRLADALLELGRYDEAIELYEEAlTGIFADDPHILLGLAQALFELGRYAEA------ 143
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 373220556 601 syryfpsnLETVEWLASYYLETQFSEKSINYlekaalmqpnvskwqmmiASCLRRTGNYQRAFELYRQIHRKFP 674
Cdd:COG4700 144 --------LETLEKLIAKNPDFKSSDAHLLY------------------ARALEALGDLEAAEAELEALARRYS 191
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
509-567 |
1.10e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 1.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 509 ALFNIGLTAKAQGNLEQALEFFYKLHGIL--------LNNVQVLVQLASIYESLEDSAQAIELYSQA 567
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERA 71
|
|
| TPR_14 |
pfam13428 |
Tetratricopeptide repeat; |
541-584 |
1.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463874 [Multi-domain] Cd Length: 44 Bit Score: 37.40 E-value: 1.14e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 373220556 541 VQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADL 584
Cdd:pfam13428 1 PEALLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
194-293 |
1.60e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 194 QQYEANDMtNEALNTYEIIVRNkmFPNSGRLK---VNIGNIHFRKREFTKALKYYRMALDQVPsiQKDTRIKILNNIGVT 270
Cdd:COG1729 2 ALLKAGDY-DEAIAAFKAFLKR--YPNSPLAPdalYWLGEAYYALGDYDEAAEAFEKLLKRYP--DSPKAPDALLKLGLS 76
|
90 100
....*....|....*....|...
gi 373220556 271 FVRMGSYDDAISTFDHCVEENPN 293
Cdd:COG1729 77 YLELGDYDKARATLEELIKKYPD 99
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
480-521 |
1.83e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.68 E-value: 1.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 373220556 480 GNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQG 521
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
508-574 |
3.00e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.69 E-value: 3.00e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 373220556 508 QALFNIGLTAKAQGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPND 574
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
555-712 |
3.08e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 555 EDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPSNLETVEWLASYYLETQFsEKSINYLEK 634
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDF-EESLALLEQ 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 373220556 635 AALMQPNVSKWQMMIASCLRRTGNYQRAFELYRQIHRKFPQDLDCLKFLVRIAGDLGmtEYKEYKDKLEKAEKINQLR 712
Cdd:COG5010 80 ALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG--QDDEAKAALQRALGTSPLK 155
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
475-596 |
4.07e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.28 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 475 AQVNQGNIAYMNGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKLHGILLNN-VQVLVQLASIYES 553
Cdd:COG3071 18 AALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAeLAVLLTRAELLLD 97
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 373220556 554 LEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDKSQAFQ 596
Cdd:COG3071 98 QGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLE 140
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
485-598 |
4.42e-03 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 39.87 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 485 MNGDLDKALNNYREAlnndASCvqalFNIGLTAKAQGNLEQALEFfYKLHGILLNNVQVLVQLASIYES-LEDSAQAIEL 563
Cdd:cd15832 64 KLDSKHDAANAYVEA----AKC----YKKVDPQEAVNCLEKAIEI-YTEMGRFRQAAKHLKEIAELYENeLGDLDKAIEA 134
|
90 100 110
....*....|....*....|....*....|....*
gi 373220556 564 YSQAnslvpndpailsklADLYDQEGDKSQAFQCH 598
Cdd:cd15832 135 YEQA--------------ADYYEGEGANSLANKCY 155
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
486-596 |
5.08e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 40.18 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 486 NGDLDKALNNYREALNNDASCVQALFNIGLTAKAQGNLEQALEFFYKlhgILLNNVQ----VLVQLASIYESLEDSAQAI 561
Cdd:PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER---VEEQDPEylseVLPKLMECYQALGDEAEGL 269
|
90 100 110
....*....|....*....|....*....|....*
gi 373220556 562 ELYSQANSLVPNDPAILSkLADLYDQEGDKSQAFQ 596
Cdd:PRK11788 270 EFLRRALEEYPGADLLLA-LAQLLEEQEGPEAAQA 303
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
478-533 |
5.14e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 5.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 373220556 478 NQGNIAYMNGDLDKALNNYREALNNDAS---CVQALFNIGLTAKAQGNLEQALEFFYKL 533
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAA 60
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
618-714 |
5.65e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 618 YYLETQFSEKSINYLEKAALMQPNVSKWQMMIASCLRRTGNYQRAFElYRQIHRKFPQDLDCLKFLVRIAGDLGmtEYKE 697
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG--DYDE 77
|
90
....*....|....*..
gi 373220556 698 YKDKLEKAEKINQLRLQ 714
Cdd:COG3063 78 ALAYLERALELDPSALR 94
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
520-584 |
7.05e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 7.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 373220556 520 QGNLEQALEFFYKLHGILLNNVQVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADL 584
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
436-501 |
7.60e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 7.60e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 373220556 436 ASAAANNLCMLRFLQGgrRLVDAQQYADQALSIDR--------YNAHAQVNQGNIAYMNGDLDKALNNYREALN 501
Cdd:pfam13424 2 VATALNNLAAVLRRLG--RYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
395-502 |
9.09e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 38.30 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 395 SVHAPLAIeleMTKAGELMKNGDIEGAIEVLK--VFNSQDSKTASAAANNLcmlrflqgGRRLVDAQQYaDQALSI---- 468
Cdd:COG2976 86 TAYAALAA---LLLAKAAVDAGDLDKAAAQLQwvLDNAKDPALKALARLRL--------ARVLLAQKKY-DEALATldav 153
|
90 100 110
....*....|....*....|....*....|....*.
gi 373220556 469 --DRYNAHAQVNQGNIAYMNGDLDKALNNYREALNN 502
Cdd:COG2976 154 kpEAFAALYAELRGDILLAQGDKAEARAAYQKALAA 189
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
227-254 |
9.22e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 9.22e-03
10 20
....*....|....*....|....*...
gi 373220556 227 NIGNIHFRKREFTKALKYYRMALDQVPS 254
Cdd:smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
230-323 |
9.44e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.63 E-value: 9.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 373220556 230 NIHFRKREFTKALKYYRMALDQVPsiqkdTRIKILNNIGVTFVRMGSYDDAISTFDHCVEENPNFITAL-NLILVAFCIQ 308
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDP-----NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYsNLAALLLSLG 136
|
90
....*....|....*
gi 373220556 309 DAEKMREAFVKMIDI 323
Cdd:COG5010 137 QDDEAKAALQRALGT 151
|
|
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