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Conserved domains on  [gi|426545879|emb|CCJ74064|]
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FKBP-type peptidyl-prolyl cis-trans isomerase fklB [Cronobacter condimenti 1330]

Protein Classification

peptidylprolyl isomerase( domain architecture ID 11485412)

FKBP-type peptidylprolyl isomerase (PPIase) accelerates the folding of proteins; it catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
26-231 1.89e-157

peptidyl-prolyl cis-trans isomerase; Provisional


:

Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 434.23  E-value: 1.89e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879  26 MTTPSFDTIEAQASYGIGLQVGQQLRESGLQGLLPEALVAGLRDALEGNQPAVPVDVVHRALREIHERADAVRRERQQEM 105
Cdd:PRK11570   1 MTTPTFDSIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGLADALEGKHPAVPVDVVHRALREIHERADAVRRERQQAM 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879 106 AVEGQKYLDENRERDGVNSTESGLQFRVLTQGEGPIPSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVSGVIAGWIE 185
Cdd:PRK11570  81 AAEGVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 426545879 186 ALTLMPVGSKWELTIPHNLAYGERGAGASIPPFSTLVFEVELLEIL 231
Cdd:PRK11570 161 ALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206
 
Name Accession Description Interval E-value
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
26-231 1.89e-157

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 434.23  E-value: 1.89e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879  26 MTTPSFDTIEAQASYGIGLQVGQQLRESGLQGLLPEALVAGLRDALEGNQPAVPVDVVHRALREIHERADAVRRERQQEM 105
Cdd:PRK11570   1 MTTPTFDSIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGLADALEGKHPAVPVDVVHRALREIHERADAVRRERQQAM 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879 106 AVEGQKYLDENRERDGVNSTESGLQFRVLTQGEGPIPSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVSGVIAGWIE 185
Cdd:PRK11570  81 AAEGVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 426545879 186 ALTLMPVGSKWELTIPHNLAYGERGAGASIPPFSTLVFEVELLEIL 231
Cdd:PRK11570 161 ALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
129-230 1.20e-53

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 167.67  E-value: 1.20e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879 129 LQFRVLTQGEGPIPSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVS--GVIAGWIEALTLMPVGSKWELTIPHNLAY 206
Cdd:COG0545    1 LQYKVLKEGTGAKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGvgQVIPGWDEGLQGMKVGGKRRLVIPPELAY 80
                         90       100
                 ....*....|....*....|....
gi 426545879 207 GERGAGASIPPFSTLVFEVELLEI 230
Cdd:COG0545   81 GERGAGGVIPPNSTLVFEVELLDV 104
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
142-228 6.27e-38

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 127.31  E-value: 6.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879  142 PSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--SGVIAGWIEALTLMPVGSKWELTIPHNLAYGERG-AGASIPPF 218
Cdd:pfam00254   5 AKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLgsGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGlAGPVIPPN 84
                          90
                  ....*....|
gi 426545879  219 STLVFEVELL 228
Cdd:pfam00254  85 ATLVFEVELL 94
 
Name Accession Description Interval E-value
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
26-231 1.89e-157

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 434.23  E-value: 1.89e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879  26 MTTPSFDTIEAQASYGIGLQVGQQLRESGLQGLLPEALVAGLRDALEGNQPAVPVDVVHRALREIHERADAVRRERQQEM 105
Cdd:PRK11570   1 MTTPTFDSIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGLADALEGKHPAVPVDVVHRALREIHERADAVRRERQQAM 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879 106 AVEGQKYLDENRERDGVNSTESGLQFRVLTQGEGPIPSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVSGVIAGWIE 185
Cdd:PRK11570  81 AAEGVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 426545879 186 ALTLMPVGSKWELTIPHNLAYGERGAGASIPPFSTLVFEVELLEIL 231
Cdd:PRK11570 161 ALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
129-230 1.20e-53

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 167.67  E-value: 1.20e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879 129 LQFRVLTQGEGPIPSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVS--GVIAGWIEALTLMPVGSKWELTIPHNLAY 206
Cdd:COG0545    1 LQYKVLKEGTGAKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGvgQVIPGWDEGLQGMKVGGKRRLVIPPELAY 80
                         90       100
                 ....*....|....*....|....
gi 426545879 207 GERGAGASIPPFSTLVFEVELLEI 230
Cdd:COG0545   81 GERGAGGVIPPNSTLVFEVELLDV 104
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
31-230 3.35e-41

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 141.44  E-value: 3.35e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879  31 FDTIEAQASYGIGLQVGQ----QLRESGLQG--LLPEALVAGLRDALeGNQPAVPVDVVHRALREIHER----ADAVRRE 100
Cdd:PRK10902  41 FKNDDQQSAYALGASLGRymenSLKEQEKLGikLDKDQLIAGVQDAF-ADKSKLSDQEIEQTLQAFEARvksaAQAKMEK 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879 101 RQQEMAVEGQKYLDENRERDGVNSTESGLQFRVLTQGEGPIPSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVSGVI 180
Cdd:PRK10902 120 DAADNEAKGKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVI 199
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 426545879 181 AGWIEALTLMPVGSKWELTIPHNLAYGERGAgASIPPFSTLVFEVELLEI 230
Cdd:PRK10902 200 PGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLDV 248
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
142-228 6.27e-38

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 127.31  E-value: 6.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879  142 PSRKDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--SGVIAGWIEALTLMPVGSKWELTIPHNLAYGERG-AGASIPPF 218
Cdd:pfam00254   5 AKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLgsGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGlAGPVIPPN 84
                          90
                  ....*....|
gi 426545879  219 STLVFEVELL 228
Cdd:pfam00254  85 ATLVFEVELL 94
FKBP_N pfam01346
Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; This family is only found at the ...
35-133 7.02e-25

Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; This family is only found at the amino terminus of pfam00254. This entry represents the N-terminal domain found in FKBP-type peptidylprolyl isomerases (PPIase). The N-terminal domain forms the dimer interface by the mutual exchange of two beta-strands between monomers.


Pssm-ID: 460169  Cd Length: 97  Bit Score: 94.10  E-value: 7.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 426545879   35 EAQASYGIGLQVGQQLRESGLqGLLPEALVAGLRDALEGNQPAVPvDVVHRALREIHERADAVRRERQQEMAVEGQKYLD 114
Cdd:pfam01346   1 KDKVSYAIGLQIGQQLKQQGI-ELDLDAFLAGLKDALAGKPLLTD-EEAQEALQAFQEKLQAKQEEQAEKNKAEGEAFLA 78
                          90
                  ....*....|....*....
gi 426545879  115 ENRERDGVNSTESGLQFRV 133
Cdd:pfam01346  79 ENKKKEGVKTTESGLQYKV 97
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
146-209 1.04e-10

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 57.80  E-value: 1.04e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 426545879 146 DRVRVHYTGKLIDGTVFDSSVaRGEPAEFPV--SGVIAGWIEALTLMPVGSKWELTIPHNLAYGER 209
Cdd:COG1047    5 DVVTLHYTLKLEDGEVFDSTF-EGEPLEFLHgaGQLIPGLEEALEGMEVGDKKTVTLPPEEAYGER 69
PRK15095 PRK15095
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
148-209 4.20e-03

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 237908 [Multi-domain]  Cd Length: 156  Bit Score: 36.61  E-value: 4.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 426545879 148 VRVHYTGKLIDGTVFDSSVARGEPAEFPV-SGVIAGWIEA-LTLMPVGSKWELTIPHNLAYGER 209
Cdd:PRK15095  11 VLVHFTLKLDDGSTAESTRNNGKPALFRLgDGSLSEGLEQqLLGLKVGDKKTFSLEPEAAFGVP 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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