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Conserved domains on  [gi|524511099|emb|CDC49668|]
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putative uncharacterized protein [Clostridium sp. CAG:58]

Protein Classification

TnpV protein( domain architecture ID 10624640)

transposon-encoded TnpV family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TnpV pfam14198
Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This ...
 14-115 3.07e-31

Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 114 and 125 amino acids in length.


:

Pssm-ID: 433767  Cd Length: 112  Bit Score: 106.81  E-value: 3.07e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524511099   14 CFIPVIEF-QSVEDKFLNKYGRMRREFLEEQNPMFFDDRVLTEQLFPHLYEVQEIAEKRVEVIMAGLLEKNPAPD--RGM 90
Cdd:pfam14198   8 YLIPNLTLpEEEEERPIGKYGRMRLRYLKEHRPGLYTNLLLSGKLNEHLAEIDEQAEERLERLVKQMAEKEGVTEelKAE 87

                          90       100
                  ....*....|....*....|....*
gi 524511099   91 DAMDWIRHMNVPREMEEDLVVREVI 115
Cdd:pfam14198  88 DQMEWVRRMNNIRNRAEEIVLNELI 112
 
Name Accession Description Interval E-value
TnpV pfam14198
Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This ...
 14-115 3.07e-31

Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 114 and 125 amino acids in length.


Pssm-ID: 433767  Cd Length: 112  Bit Score: 106.81  E-value: 3.07e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524511099   14 CFIPVIEF-QSVEDKFLNKYGRMRREFLEEQNPMFFDDRVLTEQLFPHLYEVQEIAEKRVEVIMAGLLEKNPAPD--RGM 90
Cdd:pfam14198   8 YLIPNLTLpEEEEERPIGKYGRMRLRYLKEHRPGLYTNLLLSGKLNEHLAEIDEQAEERLERLVKQMAEKEGVTEelKAE 87

                          90       100
                  ....*....|....*....|....*
gi 524511099   91 DAMDWIRHMNVPREMEEDLVVREVI 115
Cdd:pfam14198  88 DQMEWVRRMNNIRNRAEEIVLNELI 112
 
Name Accession Description Interval E-value
TnpV pfam14198
Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This ...
 14-115 3.07e-31

Transposon-encoded protein TnpV; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 114 and 125 amino acids in length.


Pssm-ID: 433767  Cd Length: 112  Bit Score: 106.81  E-value: 3.07e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524511099   14 CFIPVIEF-QSVEDKFLNKYGRMRREFLEEQNPMFFDDRVLTEQLFPHLYEVQEIAEKRVEVIMAGLLEKNPAPD--RGM 90
Cdd:pfam14198   8 YLIPNLTLpEEEEERPIGKYGRMRLRYLKEHRPGLYTNLLLSGKLNEHLAEIDEQAEERLERLVKQMAEKEGVTEelKAE 87

                          90       100
                  ....*....|....*....|....*
gi 524511099   91 DAMDWIRHMNVPREMEEDLVVREVI 115
Cdd:pfam14198  88 DQMEWVRRMNNIRNRAEEIVLNELI 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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