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Conserved domains on  [gi|549129927|emb|CDI12393|]
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conserved protein of unknown function (plasmid) [Agrobacterium pusense]

Protein Classification

DUF982 domain-containing protein( domain architecture ID 10533068)

uncharacterized DUF736 domain-containing protein similar to Agrobacterium tumefaciens protein Atu1219

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF982 pfam06169
Protein of unknown function (DUF982); This family consists of several hypothetical proteins ...
 8-77 2.46e-12

Protein of unknown function (DUF982); This family consists of several hypothetical proteins from Rhizobium meliloti, Rhizobium loti and Agrobacterium tumefaciens. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


:

Pssm-ID: 428803  Cd Length: 71  Bit Score: 56.87  E-value: 2.46e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 549129927   8 EPVTILIGLGFPT-EVRSVIDAYRHLAE-WPASmRDTAHSMALKACSAALRGEIEADTARGLFAAFAAKHDL 77
Cdd:pfam06169  1 KPVTLVLGKGGGIrTVSSPEEALDLLLEeWPVR-EGPAYEAALRACRAALDGRVPPEEARRAFIAAAKEAGI 71
 
Name Accession Description Interval E-value
DUF982 pfam06169
Protein of unknown function (DUF982); This family consists of several hypothetical proteins ...
 8-77 2.46e-12

Protein of unknown function (DUF982); This family consists of several hypothetical proteins from Rhizobium meliloti, Rhizobium loti and Agrobacterium tumefaciens. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 428803  Cd Length: 71  Bit Score: 56.87  E-value: 2.46e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 549129927   8 EPVTILIGLGFPT-EVRSVIDAYRHLAE-WPASmRDTAHSMALKACSAALRGEIEADTARGLFAAFAAKHDL 77
Cdd:pfam06169  1 KPVTLVLGKGGGIrTVSSPEEALDLLLEeWPVR-EGPAYEAALRACRAALDGRVPPEEARRAFIAAAKEAGI 71
 
Name Accession Description Interval E-value
DUF982 pfam06169
Protein of unknown function (DUF982); This family consists of several hypothetical proteins ...
 8-77 2.46e-12

Protein of unknown function (DUF982); This family consists of several hypothetical proteins from Rhizobium meliloti, Rhizobium loti and Agrobacterium tumefaciens. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 428803  Cd Length: 71  Bit Score: 56.87  E-value: 2.46e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 549129927   8 EPVTILIGLGFPT-EVRSVIDAYRHLAE-WPASmRDTAHSMALKACSAALRGEIEADTARGLFAAFAAKHDL 77
Cdd:pfam06169  1 KPVTLVLGKGGGIrTVSSPEEALDLLLEeWPVR-EGPAYEAALRACRAALDGRVPPEEARRAFIAAAKEAGI 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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