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Conserved domains on  [gi|857688497|emb|CDU02732|]
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TPR-repeat-containing protein [Vibrio coralliirubri]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-480 9.30e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 9.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 243 LSSRLAKVNRLLAQLFFERQVLDKALEHLSQAAdfydnfENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDr 322
Cdd:COG0457    3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAL------ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 323 dihqvIDIRLSLSATYLRLYNYPLAEQYLTRALELlEYTDIPKLEGRAALLsaglaYHLQESEDVIKHATRALEISRQIE 402
Cdd:COG0457   76 -----AEALNNLGLALQALGRYEEALEDYDKALEL-DPDDAEALYNLGLAL-----LELGRYDEAIEAYERALELDPDDA 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857688497 403 NmrlsqrSYYLLSLGYEQAGRPQQALANLKQYNSLVSLEQQKLNRVGEDAFRQQKEFAEQTLHYAGQAQELEKYKLEH 480
Cdd:COG0457  145 D------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-480 9.30e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 9.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 243 LSSRLAKVNRLLAQLFFERQVLDKALEHLSQAAdfydnfENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDr 322
Cdd:COG0457    3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAL------ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 323 dihqvIDIRLSLSATYLRLYNYPLAEQYLTRALELlEYTDIPKLEGRAALLsaglaYHLQESEDVIKHATRALEISRQIE 402
Cdd:COG0457   76 -----AEALNNLGLALQALGRYEEALEDYDKALEL-DPDDAEALYNLGLAL-----LELGRYDEAIEAYERALELDPDDA 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857688497 403 NmrlsqrSYYLLSLGYEQAGRPQQALANLKQYNSLVSLEQQKLNRVGEDAFRQQKEFAEQTLHYAGQAQELEKYKLEH 480
Cdd:COG0457  145 D------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
TPR_12 pfam13424
Tetratricopeptide repeat;
287-359 1.98e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 1.98e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 857688497  287 LAQVLKKMGDVYFYQGKYNLALVHFFNVLDH--ESTDRDIHQVIDIRLSLSATYLRLYNYPLAEQYLTRALELLE 359
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 172-433 5.79e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 5.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  172 MLKADIASYDNKVDEAEKFYQEAktyldqRYSEKVTIDYHISVGEFYLTHKEYNHALSElLYGYWKSVEGNLssrlaKVN 251
Cdd:TIGR02917 197 LLKGDLLLSLGNIELALAAYRKA------IALRPNNIAVLLALATILIEAGEFEEAEKH-ADALLKKAPNSP-----LAH 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  252 RLLAQLFFERQVLDKALEHLSQAADFYDNFENSPVLAqvlkkmGDVYFYQGKYNLALVHFFNVLDHESTDrdihqvIDIR 331
Cdd:TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA------GASEYQLGNLEQAYQYLNQILKYAPNS------HQAR 332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  332 LSLSATYLRLYNYPLAEQYLTRALELLEytdipklEGRAALLSAGLAY-HLQESEDVIKHATRALEISRQIENMRLSQRS 410
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDP-------DDPAALSLLGEAYlALGDFEKAAEYLAKATELDPENAAARTQLGI 405

                         250       260
                  ....*....|....*....|...
gi 857688497  411 YYLLSlgyeqaGRPQQALANLKQ 433
Cdd:TIGR02917 406 SKLSQ------GDPSEAIADLET 422
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-480 9.30e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 9.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 243 LSSRLAKVNRLLAQLFFERQVLDKALEHLSQAAdfydnfENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDr 322
Cdd:COG0457    3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAL------ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 323 dihqvIDIRLSLSATYLRLYNYPLAEQYLTRALELlEYTDIPKLEGRAALLsaglaYHLQESEDVIKHATRALEISRQIE 402
Cdd:COG0457   76 -----AEALNNLGLALQALGRYEEALEDYDKALEL-DPDDAEALYNLGLAL-----LELGRYDEAIEAYERALELDPDDA 144

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857688497 403 NmrlsqrSYYLLSLGYEQAGRPQQALANLKQYNSLVSLEQQKLNRVGEDAFRQQKEFAEQTLHYAGQAQELEKYKLEH 480
Cdd:COG0457  145 D------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-434 1.03e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 173 LKADIASYDNKVDEAEKFYQEAktylDQRYSEkvTIDYHISVGEFYLTHKEYNHALSELLygywKSVEgnLSSRLAKVNR 252
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEA----LELDPE--TVEAHLALGNLYRRRGEYDRAIRIHQ----KLLE--RDPDRAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 253 LLAQLFFERQVLDKALEHLSQAAdfydnfENSPVLAQVLKKMGDVYFYQGKYNLALvHFFNVLDHESTDRdihqvIDIRL 332
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLL------ELDPDDAEALRLLAEIYEQEGDWEKAI-EVLERLLKLGPEN-----AHAYC 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 333 SLSATYLRLYNYPLAEQYLTRALELleytdIPKLEgRAALLSAGLAYHLQESEDVIKHATRALEISRQienmrlSQRSYY 412
Cdd:COG2956  149 ELAELYLEQGDYDEAIEALEKALKL-----DPDCA-RALLLLAELYLEQGDYEEAIAALERALEQDPD------YLPALP 216

                        250       260
                 ....*....|....*....|..
gi 857688497 413 LLSLGYEQAGRPQQALANLKQY 434
Cdd:COG2956  217 RLAELYEKLGDPEEALELLRKA 238
COG3899 COG3899
Predicted ATPase [General function prediction only];
240-433 1.61e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 48.70  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  240 EGNLSSRLAKVNRLLAQLFFERQVLDKALEHLSQAADFYDNFENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHES 319
Cdd:COG3899   697 RAGERDRAARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARA 776

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  320 TDRDIHQVIDIRLSLSATY-----LRLYNYPLAEQYLTRALELLEYTDIPKLEGRAALLSAGLAYHLQESEDVIKHATRA 394
Cdd:COG3899   777 LAALAALRHGNPPASARAYanlglLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREA 856

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 857688497  395 LEISRQIENMRLSQRSYYLLSLGYEQAGRPQQALANLKQ 433
Cdd:COG3899   857 LEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAAR 895
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 182-434 2.21e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 2.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 182 NKVDEAEKFYQEAKTYLDQRYsekvtiDYHISVGEFYLTHKEYNHALSELLygywKSVEGNLSSRLAKvnRLLAQLFFER 261
Cdd:COG2956   56 GEYDRAIRIHQKLLERDPDRA------EALLELAQDYLKAGLLDRAEELLE----KLLELDPDDAEAL--RLLAEIYEQE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 262 QVLDKALEHLSQAAdfydnfENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDrdihqvIDIRLSLSATYLRL 341
Cdd:COG2956  124 GDWEKAIEVLERLL------KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQ 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 342 YNYPLAEQYLTRALELleytDIPKLEGRAALlsAGLAYHLQESEDVIKHATRALEISRQIEnmrlsqrSYYLLSLGYEQA 421
Cdd:COG2956  192 GDYEEAIAALERALEQ----DPDYLPALPRL--AELYEKLGDPEEALELLRKALELDPSDD-------LLLALADLLERK 258

                        250
                 ....*....|...
gi 857688497 422 GRPQQALANLKQY 434
Cdd:COG2956  259 EGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
243-470 2.39e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 2.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 243 LSSRLAKVNRLLAQLFFERQVLDKALEHLSQAAdfydnfENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDR 322
Cdd:COG0457   37 LDPDDAEALYNLGLAYLRLGRYEEALADYEQAL------ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 323 DIHqvidirLSLSATYLRLYNYPLAEQYLTRALELleytdipKLEGRAALLSAGLAYHLQESEDVIKHATRALEISRQIE 402
Cdd:COG0457  111 EAL------YNLGLALLELGRYDEAIEAYERALEL-------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857688497 403 NMRLSQRSYYLLSLGYEQAGRPQQALANLKQYNSLVSLEQQKLNRVGEDAFRQQKEFAEQTLHYAGQA 470
Cdd:COG0457  178 LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 245-357 5.73e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 5.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 245 SRLAKVNRLLAQLFFERQVLDKALEHLSQAadfydnFENSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDRdi 324
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKA------LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP-- 72

                         90       100       110
                 ....*....|....*....|....*....|...
gi 857688497 325 hqviDIRLSLSATYLRLYNYPLAEQYLTRALEL 357
Cdd:COG4783   73 ----EARLNLGLALLKAGDYDEALALLEKALKL 101
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 334-433 7.91e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 7.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 334 LSATYLRLYNYPLAEQYLTRALELleytDIPKLEGRAALlsAGLAYHLQESEDVIKHATRALEISRQienmrlSQRSYYL 413
Cdd:COG4235   23 LGRAYLRLGRYDEALAAYEKALRL----DPDNADALLDL--AEALLAAGDTEEAEELLERALALDPD------NPEALYL 90

                         90       100
                 ....*....|....*....|
gi 857688497 414 LSLGYEQAGRPQQALANLKQ 433
Cdd:COG4235   91 LGLAAFQQGDYAEAIAAWQK 110
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 182-396 1.37e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 182 NKVDEAEKFYQEAktyLDQRYSEkvtIDYHISVGEFYLTHKEYNHALSELLygywKSVEgnLSSRLAKVNRLLAQLFFER 261
Cdd:COG2956   90 GLLDRAEELLEKL---LELDPDD---AEALRLLAEIYEQEGDWEKAIEVLE----RLLK--LGPENAHAYCELAELYLEQ 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 262 QVLDKALEHLSQAADFYDNFenspvlAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDrdihqvIDIRLSLSATYLRL 341
Cdd:COG2956  158 GDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKL 225

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 857688497 342 YNYPLAEQYLTRALELLEYTDipklegrAALLSAGLAYHLQESEDVIKHATRALE 396
Cdd:COG2956  226 GDPEEALELLRKALELDPSDD-------LLLALADLLERKEGLEAALALLERQLR 273
TPR_12 pfam13424
Tetratricopeptide repeat;
287-359 1.98e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 1.98e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 857688497  287 LAQVLKKMGDVYFYQGKYNLALVHFFNVLDH--ESTDRDIHQVIDIRLSLSATYLRLYNYPLAEQYLTRALELLE 359
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 172-433 5.79e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 5.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  172 MLKADIASYDNKVDEAEKFYQEAktyldqRYSEKVTIDYHISVGEFYLTHKEYNHALSElLYGYWKSVEGNLssrlaKVN 251
Cdd:TIGR02917 197 LLKGDLLLSLGNIELALAAYRKA------IALRPNNIAVLLALATILIEAGEFEEAEKH-ADALLKKAPNSP-----LAH 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  252 RLLAQLFFERQVLDKALEHLSQAADFYDNFENSPVLAqvlkkmGDVYFYQGKYNLALVHFFNVLDHESTDrdihqvIDIR 331
Cdd:TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA------GASEYQLGNLEQAYQYLNQILKYAPNS------HQAR 332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497  332 LSLSATYLRLYNYPLAEQYLTRALELLEytdipklEGRAALLSAGLAY-HLQESEDVIKHATRALEISRQIENMRLSQRS 410
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDP-------DDPAALSLLGEAYlALGDFEKAAEYLAKATELDPENAAARTQLGI 405

                         250       260
                  ....*....|....*....|...
gi 857688497  411 YYLLSlgyeqaGRPQQALANLKQ 433
Cdd:TIGR02917 406 SKLSQ------GDPSEAIADLET 422
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 252-358 8.36e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 8.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857688497 252 RLLAQLFFERQVLDKALEHLSQAADFydnfenSPVLAQVLKKMGDVYFYQGKYNLALVHFFNVLDHESTDrdihqvIDIR 331
Cdd:COG4235   21 LLLGRAYLRLGRYDEALAAYEKALRL------DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN------PEAL 88

                         90       100
                 ....*....|....*....|....*..
gi 857688497 332 LSLSATYLRLYNYPLAEQYLTRALELL 358
Cdd:COG4235   89 YLLGLAAFQQGDYAEAIAAWQKLLALL 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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