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Conserved domains on  [gi|857910102|emb|CDU13786|]
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D-methionine transport system permease protein metI [Vibrio coralliirubri]

Protein Classification

methionine ABC transporter permease( domain architecture ID 10005172)

methionine ABC transporter permease is the transmembrane (TM) subunit of the ABC transporter complex, such as MetNPQ, that is involved in methionine import, and is responsible for the translocation of the substrate across the membrane

EC:  7.4.2.11
Gene Ontology:  GO:0033232|GO:0048473|GO:0042626
PubMed:  22095702|11421270|25750732|24638992
TCDB:  3.A.1.24

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 16-227 3.00e-103

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 441614  Cd Length: 220  Bit Score: 297.74  E-value: 3.00e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  16 GNLLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGT 95
Cdd:COG2011    9 WPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVGT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  96 FIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAG 175
Cdd:COG2011   89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 857910102 176 TVGGGGLGDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:COG2011  169 AVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 16-227 3.00e-103

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 297.74  E-value: 3.00e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  16 GNLLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGT 95
Cdd:COG2011    9 WPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVGT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  96 FIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAG 175
Cdd:COG2011   89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 857910102 176 TVGGGGLGDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:COG2011  169 AVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
18-227 8.82e-71

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 215.37  E-value: 8.82e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  18 LLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFI 97
Cdd:PRK10782   8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  98 GTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAGTV 177
Cdd:PRK10782  88 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 857910102 178 GGGGLGDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:PRK10782 168 GAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 41-227 2.49e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 63.09  E-value: 2.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   41 GIPLGVILhttkkgGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFiGTTAAIVPLTIGAIPFVARLIES 120
Cdd:pfam00528   1 GIPLGIIA------ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGH-GILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  121 ALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAGTVGGGGLGDVAIRYGFHRYDVTIMA 200
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153

                         170       180
                  ....*....|....*....|....*..
gi 857910102  201 VTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQRLLDPR 180
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 26-216 4.75e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.30  E-value: 4.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  26 TLYMVAVAGIVGFAVGIPLGVILhttkkggLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFIG---TTAA 102
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIIL-------ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglGLPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102 103 IVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAGTVGGGGL 182
Cdd:cd06261   77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156

                        170       180       190
                 ....*....|....*....|....*....|....
gi 857910102 183 GDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSI 216
Cdd:cd06261  157 PGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 19-157 3.88e-08

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 52.16  E-value: 3.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   19 LLGATGETLYMVAVAGIVGFAVGIPLGVIlhttKKGGLLENTKVNKILGAIVNVGRSVPFLVLmvAIIpltkMLIGTFIG 98
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIPELVW--ALI----FVAAVGLG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 857910102   99 TTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTII 157
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 16-227 3.00e-103

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 297.74  E-value: 3.00e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  16 GNLLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGT 95
Cdd:COG2011    9 WPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVGT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  96 FIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAG 175
Cdd:COG2011   89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 857910102 176 TVGGGGLGDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:COG2011  169 AVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
18-227 8.82e-71

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 215.37  E-value: 8.82e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  18 LLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFI 97
Cdd:PRK10782   8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  98 GTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAGTV 177
Cdd:PRK10782  88 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 857910102 178 GGGGLGDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:PRK10782 168 GAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 6-179 1.08e-18

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 80.87  E-value: 1.08e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   6 NEIADWISLNGNLLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGGllentkvnKILGAIVNVGRSVPFLVLMVAI 85
Cdd:COG1174    3 LSLIEWLADNRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLA--------GLVLGVANILQTIPSLALLALL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  86 IPLTKmligtfIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLV 165
Cdd:COG1174   75 IPLLG------IGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAV 148

                        170
                 ....*....|....
gi 857910102 166 TLVSYSAMAGTVGG 179
Cdd:COG1174  149 QNIGTATLAALIGA 162
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-174 3.30e-14

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 68.95  E-value: 3.30e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   1 MSFSFNEIADWIslngNLLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKGgllentkVNKILGAIVNVGRSVPFLV 80
Cdd:COG0765    1 MFFDFSVLLDYL----PLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPV-------LRWLATAYVEFFRGTPLLV 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  81 LMVAI---IPLTKMLIGTFigtTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTII 157
Cdd:COG0765   70 QLFFIyfgLPLLGIDLSPF---VAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIIL 146

                        170
                 ....*....|....*..
gi 857910102 158 NSVTITLVTLVSYSAMA 174
Cdd:COG0765  147 PPLGNEFISLLKDTSLV 163
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 11-164 1.20e-13

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 67.87  E-value: 1.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  11 WISLNGNLLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKggllentkVNKILGAIVNVGRSVPflvlMVAIIPLTK 90
Cdd:COG0600   51 VELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL--------LRRLLDPLLVFLRPIP----PLALAPLLI 118

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 857910102  91 MLIGtfIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITL 164
Cdd:COG0600  119 LWFG--IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIAL 190
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
8-217 3.51e-13

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 67.42  E-value: 3.51e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   8 IADWISLngnLLLGATGE------TLYMVAVAGIVGFAVGIPLGVILHTTKKGGllentkvnKILGAIVNVGRSVPFLVL 81
Cdd:PRK10952 128 VATLVSL---IAIGAIGAwsqamvTLALVLTALLFCIVIGLPLGIWLARSPRAA--------KIIRPLLDAMQTTPAFVY 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  82 MVAIIpltkMLIGtfIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVT 161
Cdd:PRK10952 197 LVPIV----MLFG--IGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVN 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102 162 ITLVTLVSYSAMAGTVGGGGLGDVAIRyGFHRYDVTIMAV----TVVMLIVLVQIIQSIG 217
Cdd:PRK10952 271 QTLMLALSMVVIASMIAVGGLGQMVLR-GIGRLDMGLATVggvgIVILAIILDRLTQAVG 329
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 41-227 2.49e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 63.09  E-value: 2.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   41 GIPLGVILhttkkgGLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFiGTTAAIVPLTIGAIPFVARLIES 120
Cdd:pfam00528   1 GIPLGIIA------ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGH-GILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  121 ALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAGTVGGGGLGDVAIRYGFHRYDVTIMA 200
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153

                         170       180
                  ....*....|....*....|....*..
gi 857910102  201 VTVVMLIVLVQIIQSIGDSLVRRVDHR 227
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQRLLDPR 180
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 26-216 4.75e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.30  E-value: 4.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  26 TLYMVAVAGIVGFAVGIPLGVILhttkkggLLENTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFIG---TTAA 102
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIIL-------ARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglGLPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102 103 IVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMAGTVGGGGL 182
Cdd:cd06261   77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156

                        170       180       190
                 ....*....|....*....|....*....|....
gi 857910102 183 GDVAIRYGFHRYDVTIMAVTVVMLIVLVQIIQSI 216
Cdd:cd06261  157 PGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
19-157 2.64e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 56.32  E-value: 2.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  19 LLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKkggllenTKVNKILGAIVNVGRSVPFLVLMVAIIPLTKMLIGTFIG 98
Cdd:COG1178  336 LLRALLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLY 408

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 857910102  99 TTAAIVPL--TIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTII 157
Cdd:COG1178  409 GTLAILVLayVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLL 469
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 19-158 3.33e-09

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 55.09  E-value: 3.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  19 LLGATGETLYMVAVAGIVGFAVGIPLGvILHTtkkGGLLENTKVNKILGAIVNVGRSVPflVLMVAIIpltkMLIGTFIG 98
Cdd:COG3639   49 LLSALLETLAIALLGTLLGAVLALPLA-FLAA---RNLAPNPWVRLLARRLLNVLRAIP--ELVWALI----FVAAVGLG 118

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  99 TTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIIN 158
Cdd:COG3639  119 PFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 26-166 4.27e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 4.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  26 TLYMVAVAGIVGFAVGIPLGVILHTtkKGGllentKVNKILGAIVNVGRSVPFLVLMVAIIpltkMLIGTfiGTTAAIVP 105
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGY--FGG-----WVDAVLMRLVDVLLAFPSLLLAIALV----AVLGP--GLLNVILA 147

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 857910102 106 LTIGAIPFVARLIESALLEVPT-GLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVT 166
Cdd:COG1173  148 LGLTGWPGYARLVRAQVLSLRErEYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 19-157 3.88e-08

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 52.16  E-value: 3.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102   19 LLGATGETLYMVAVAGIVGFAVGIPLGVIlhttKKGGLLENTKVNKILGAIVNVGRSVPFLVLmvAIIpltkMLIGTFIG 98
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIPELVW--ALI----FVAAVGLG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 857910102   99 TTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTII 157
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 18-179 4.31e-08

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 52.41  E-value: 4.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  18 LLLGATG------ETLYMVAVAGIVGFAVGIPLGVILHTTKKggllentkVNKILGAIVNVGRSVPFLVLMVAIIpltkM 91
Cdd:COG4176   81 LLIGNLGlweeamQTLALVLVAVLIALLIGIPLGILAARSDR--------VSRIVRPVLDFMQTMPAFVYLIPAV----M 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  92 LIGtfIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYS 171
Cdd:COG4176  149 LFG--IGKVPGVIATVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMV 226


                 ....*...
gi 857910102 172 AMAGTVGG 179
Cdd:COG4176  227 VIASMIGA 234
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 95-163 1.45e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 50.52  E-value: 1.45e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  95 TFIGTTAAIV-PLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTIT 163
Cdd:COG0555  131 KVAFTPLGIVlAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 100-160 1.57e-07

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 50.86  E-value: 1.57e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 857910102 100 TAAIVpLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSV 160
Cdd:COG0573  158 TAGIV-LAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
cysT CHL00187
sulfate transport protein; Provisional
 64-163 8.88e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 45.39  E-value: 8.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  64 KILGAIVNVGRSVPFLV--LMVAIIPLTKMLIGTFIGTTAAIVPLTIGAI---------PFVARLIESALLEVPTGLVEA 132
Cdd:CHL00187  91 RLLDAAVDLPFALPTSVagLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVllamifvsfPFVVRTIQPVLQEIEKELEEA 170

                         90       100       110
                 ....*....|....*....|....*....|.
gi 857910102 133 AQSMGATPTQIINKVLLPEALPTIINSVTIT 163
Cdd:CHL00187 171 AWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 98-157 3.06e-05

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 43.56  E-value: 3.06e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  98 GTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTII 157
Cdd:COG1177  130 GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGIL 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
98-165 3.10e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 44.38  E-value: 3.10e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 857910102  98 GTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLV 165
Cdd:COG1178  138 GLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 112-165 3.11e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 43.84  E-value: 3.11e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 857910102 112 PFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLV 165
Cdd:PRK15050 174 PFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 18-169 3.62e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 43.60  E-value: 3.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  18 LLLGATGETLYMVAVAGIVGFAVGIPLGVILHTTKKggllentKVNKILGAIVNVGRSVPFLVLMVAII-------PLTK 90
Cdd:COG1176   64 LYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPP-------RWRNLLLLLVILPFWTSFLVRTYAWIvllgrngLLNS 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  91 MLIGTFI---------GTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVT 161
Cdd:COG1176  137 LLLALGLideplrllyTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSL 216


                 ....*...
gi 857910102 162 ITLVTLVS 169
Cdd:COG1176  217 LVFIPALG 224
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 26-169 4.73e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 43.52  E-value: 4.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  26 TLYMVAVAGIVGFAVGIPLGVIlhttkkGGLLENTKVNKILGAIVNVGRSVP-FLVLMVAII---------PLTKM--LI 93
Cdd:COG0601   98 TLELALLALLLALLIGIPLGIL------AALRRGSWLDRLITVLALLGISIPsFWLGLLLILlfavklgwlPVSGRvsPW 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  94 GTFIGTTAAIVP----LTIGAIPFVARLIESALLEVptgL----VEAAQSMGATPTQIINKVLLPEALPTIINSVTITLV 165
Cdd:COG0601  172 EDFLDALRHLILpaltLALGSLAGIARLTRSSMLEV---LgqdyVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLG 248


                 ....
gi 857910102 166 TLVS 169
Cdd:COG0601  249 GLLG 252
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
95-165 1.02e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 42.43  E-value: 1.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 857910102  95 TFIGTTAAivpLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLV 165
Cdd:PRK10971 139 TWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 94-164 1.12e-04

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 42.25  E-value: 1.12e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 857910102   94 GTFIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITL 164
Cdd:TIGR02138 146 LFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGL 216
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
20-164 1.90e-04

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 41.46  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  20 LGATGETLYMVAVA---GIVGFAVGIPLGVILhttkkgGLLENTKV--NKILGAIVNVGRSVPFLvlmvAIIPLTKMLIG 94
Cdd:PRK11365  52 LSASGELWQHLAISswrALIGFSIGGSLGLIL------GLISGLSRwgERLLDTSIQMLRNVPHL----ALIPLVILWFG 121

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  95 tfIGTTAAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITL 164
Cdd:PRK11365 122 --IDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFAL 189
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
27-157 2.63e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 40.96  E-value: 2.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  27 LYMVAVAGIVGFAVGIPLGVIlhttkkGGllentKVNKILGAIVNVGRSVPFLVLMVAiipLTKMLIGTFIGTTAAIvpl 106
Cdd:PRK09881 101 LVVVAIAGMIGSLLGCLSGVL------GG-----RADAIIMRIMDIMLSIPSLVLTMA---LAAALGPSLFNAMLAI--- 163

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 857910102 107 TIGAIPFVARLIESALLEV-PTGLVEAAQSMGATPTQIINKVLLPEALPTII 157
Cdd:PRK09881 164 AIVRIPFYVRLARGQALVVrQYTYVQAAKTFGASRWHLISWHILRNSLPPLI 215
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 63-157 5.13e-04

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 40.08  E-value: 5.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  63 NKILGAIVNVGRSVPFLVLMvaiIPLTKM-----LIGTFIGTtaaIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMG 137
Cdd:COG0395  109 RKLLFLLILATLMIPGQVLL---IPLYLLfrqlgLLNTYWGL---ILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDG 182

                         90       100
                 ....*....|....*....|
gi 857910102 138 ATPTQIINKVLLPEALPTII 157
Cdd:COG0395  183 ASEFRIFWRIVLPLSKPALA 202
PRK10160 PRK10160
taurine ABC transporter permease TauC;
24-164 7.50e-04

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 39.77  E-value: 7.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857910102  24 GETLYMVAVAGIVGFAVGIPLGVILhttkkgGLleNTKVNKILGAIVNVGRSVPFLvlmvAIIPLtkMLIGTFIGTTAAI 103
Cdd:PRK10160  81 AASLTRIVLALLAAVVIGIPVGIAM------GL--SPTVRGILDPLIELYRPVPPL----AYLPL--MVIWFGIGETSKI 146

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 857910102 104 VPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITL 164
Cdd:PRK10160 147 LLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGL 207
PRK15100 PRK15100
cystine ABC transporter permease;
101-174 5.71e-03

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 36.65  E-value: 5.71e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 857910102 101 AAIVPLTIGAIPFVARLIESALLEVPTGLVEAAQSMGATPTQIINKVLLPEALPTIINSVTITLVTLVSYSAMA 174
Cdd:PRK15100  90 AAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLA 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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