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Conserved domains on  [gi|893405182|emb|CND23058|]
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putative inner membrane protein [Yersinia intermedia]

Protein Classification

DUF1656 domain-containing protein( domain architecture ID 10545269)

uncharacterized protein belonging to the DUF1656 family with similarity to Escherichia coli YdhI

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1656 pfam07869
Protein of unknown function (DUF1656); This entry represents a putative component of efflux ...
 19-70 2.21e-05

Protein of unknown function (DUF1656); This entry represents a putative component of efflux pumps that comprise MFP and FUSC proteins. Several members are in an operon with and have similar mutants phenotypes as an RND efflux pump and a fusaric acid resistance-like protein. This system is involved in transporting diverse substrates including 4-hydroxybenzoate and octanoate.


:

Pssm-ID: 429704  Cd Length: 56  Bit Score: 37.80  E-value: 2.21e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 893405182  19 ASIYFPPLFKAVMLGLVFWLLIHHVLRNWIYSGDIWHPILMDLSIFVIAVSV 70
Cdd:pfam07869  5 GGVYVPPLLVLALLALLLTLLLRRLLARLGLYRFVWHPALFDLALFVCLLGL 56
 
Name Accession Description Interval E-value
DUF1656 pfam07869
Protein of unknown function (DUF1656); This entry represents a putative component of efflux ...
 19-70 2.21e-05

Protein of unknown function (DUF1656); This entry represents a putative component of efflux pumps that comprise MFP and FUSC proteins. Several members are in an operon with and have similar mutants phenotypes as an RND efflux pump and a fusaric acid resistance-like protein. This system is involved in transporting diverse substrates including 4-hydroxybenzoate and octanoate.


Pssm-ID: 429704  Cd Length: 56  Bit Score: 37.80  E-value: 2.21e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 893405182  19 ASIYFPPLFKAVMLGLVFWLLIHHVLRNWIYSGDIWHPILMDLSIFVIAVSV 70
Cdd:pfam07869  5 GGVYVPPLLVLALLALLLTLLLRRLLARLGLYRFVWHPALFDLALFVCLLGL 56
 
Name Accession Description Interval E-value
DUF1656 pfam07869
Protein of unknown function (DUF1656); This entry represents a putative component of efflux ...
 19-70 2.21e-05

Protein of unknown function (DUF1656); This entry represents a putative component of efflux pumps that comprise MFP and FUSC proteins. Several members are in an operon with and have similar mutants phenotypes as an RND efflux pump and a fusaric acid resistance-like protein. This system is involved in transporting diverse substrates including 4-hydroxybenzoate and octanoate.


Pssm-ID: 429704  Cd Length: 56  Bit Score: 37.80  E-value: 2.21e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 893405182  19 ASIYFPPLFKAVMLGLVFWLLIHHVLRNWIYSGDIWHPILMDLSIFVIAVSV 70
Cdd:pfam07869  5 GGVYVPPLLVLALLALLLTLLLRRLLARLGLYRFVWHPALFDLALFVCLLGL 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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