NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|893364462|emb|CNJ10302|]
View 

protein yciN [Yersinia intermedia]

Protein Classification

YciN family protein( domain architecture ID 10013713)

YciN family protein is a DUF2498 domain-containing protein similar to Escherichia coli protein YciN

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK11037 PRK11037
hypothetical protein; Provisional
 1-83 2.41e-55

hypothetical protein; Provisional


:

Pssm-ID: 182919  Cd Length: 83  Bit Score: 165.12  E-value: 2.41e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893364462  1 MFGNTTPIERNKLLAEANEIIRQHEDYLHGMQATEVEQKGPVLVFRGEFFLDADGLPTAKTTAVFNMFKHLAHVLSAKYH 80
Cdd:PRK11037  1 MMKETQPIDRETLLLEANKIIREHEDYLAGMRATDVEQKNGVLVFRGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYH 80


                ...
gi 893364462 81 LID 83
Cdd:PRK11037 81 LVD 83
 
Name Accession Description Interval E-value
PRK11037 PRK11037
hypothetical protein; Provisional
 1-83 2.41e-55

hypothetical protein; Provisional


Pssm-ID: 182919  Cd Length: 83  Bit Score: 165.12  E-value: 2.41e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893364462  1 MFGNTTPIERNKLLAEANEIIRQHEDYLHGMQATEVEQKGPVLVFRGEFFLDADGLPTAKTTAVFNMFKHLAHVLSAKYH 80
Cdd:PRK11037  1 MMKETQPIDRETLLLEANKIIREHEDYLAGMRATDVEQKNGVLVFRGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYH 80


                ...
gi 893364462 81 LID 83
Cdd:PRK11037 81 LVD 83
DUF2498 pfam10692
Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many ...
 4-82 6.15e-50

Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many are annotated as like E coli protein YciN. The function is not known.


Pssm-ID: 431439  Cd Length: 79  Bit Score: 151.38  E-value: 6.15e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 893364462   4 NTTPIERNKLLAEANEIIRQHEDYLHGMQATEVEQKGPVLVFRGEFFLDADGLPTAKTTAVFNMFKHLAHVLSAKYHLI 82
Cdd:pfam10692  1 EKKPISREALLLEANKIIQEHEDYLHGMRATSVEQKNGVLVFKGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHLV 79
 
Name Accession Description Interval E-value
PRK11037 PRK11037
hypothetical protein; Provisional
 1-83 2.41e-55

hypothetical protein; Provisional


Pssm-ID: 182919  Cd Length: 83  Bit Score: 165.12  E-value: 2.41e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893364462  1 MFGNTTPIERNKLLAEANEIIRQHEDYLHGMQATEVEQKGPVLVFRGEFFLDADGLPTAKTTAVFNMFKHLAHVLSAKYH 80
Cdd:PRK11037  1 MMKETQPIDRETLLLEANKIIREHEDYLAGMRATDVEQKNGVLVFRGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYH 80


                ...
gi 893364462 81 LID 83
Cdd:PRK11037 81 LVD 83
DUF2498 pfam10692
Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many ...
 4-82 6.15e-50

Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many are annotated as like E coli protein YciN. The function is not known.


Pssm-ID: 431439  Cd Length: 79  Bit Score: 151.38  E-value: 6.15e-50
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 893364462   4 NTTPIERNKLLAEANEIIRQHEDYLHGMQATEVEQKGPVLVFRGEFFLDADGLPTAKTTAVFNMFKHLAHVLSAKYHLI 82
Cdd:pfam10692  1 EKKPISREALLLEANKIIQEHEDYLHGMRATSVEQKNGVLVFKGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHLV 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH