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Conserved domains on  [gi|1041610605|emb|CZT31698|]
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ATP synthase epsilon chain [Pseudomonas cerasi]

Protein Classification

FoF1 ATP synthase subunit epsilon( domain architecture ID 11479057)

FoF1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0045261|GO:0046933|GO:0005524|GO:0005886
SCOP:  3000182|3000785

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-136 2.86e-50

F0F1 ATP synthase subunit epsilon; Validated


:

Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 156.84  E-value: 2.86e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   2 AMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLA 81
Cdd:PRK00571    1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1041610605  82 DTVQRAADLDEASAQAAVLAAEKALNEKGADFDYGSATARLAEAAAQLRTVQQIR 136
Cdd:PRK00571   81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEKLR 135
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-136 2.86e-50

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 156.84  E-value: 2.86e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   2 AMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLA 81
Cdd:PRK00571    1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1041610605  82 DTVQRAADLDEASAQAAVLAAEKALNEKGADFDYGSATARLAEAAAQLRTVQQIR 136
Cdd:PRK00571   81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEKLR 135
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 4-133 1.55e-44

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 142.01  E-value: 1.55e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   4 TVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADT 83
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1041610605  84 VQRAADLDEASAQAAVLAAEKALNEKGADFDYGSATARLAEAAAQLRTVQ 133
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 5-115 4.86e-41

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 133.01  E-value: 4.86e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   5 VHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADTV 84
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1041610605  85 QRAADLDEASAQAAVLAAEKALNEKGADFDY 115
Cdd:COG0355    81 ERAEDIDVERAEEAKERAEERLEEAKDDIDY 111
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 5-83 7.94e-36

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 118.31  E-value: 7.94e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1041610605   5 VHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADT 83
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADS 79
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 6-115 1.45e-31

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 108.75  E-value: 1.45e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   6 HCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADTVQ 85
Cdd:cd12152     2 KLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEAE 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 1041610605  86 RAADLDEASAQAAVLAAEKALNEKGADFDY 115
Cdd:cd12152    82 RPEDIDVERAEEALERAEERLAQAKDEREK 111
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-136 2.86e-50

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 156.84  E-value: 2.86e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   2 AMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLA 81
Cdd:PRK00571    1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1041610605  82 DTVQRAADLDEASAQAAVLAAEKALNEKGADFDYGSATARLAEAAAQLRTVQQIR 136
Cdd:PRK00571   81 DSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALARAIARLRVAEKLR 135
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 4-133 1.55e-44

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 142.01  E-value: 1.55e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   4 TVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADT 83
Cdd:TIGR01216   1 TLKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1041610605  84 VQRAADLDEASAQAAVLAAEKALNEKGADFDYGSATARLAEAAAQLRTVQ 133
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLEALE 130
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 5-115 4.86e-41

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 133.01  E-value: 4.86e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   5 VHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADTV 84
Cdd:COG0355     1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGEEEYFAVSGGFLEVQPNKVTILADTA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1041610605  85 QRAADLDEASAQAAVLAAEKALNEKGADFDY 115
Cdd:COG0355    81 ERAEDIDVERAEEAKERAEERLEEAKDDIDY 111
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 5-83 7.94e-36

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 118.31  E-value: 7.94e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1041610605   5 VHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADT 83
Cdd:pfam02823   1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEDGEEEYIAVSGGFLEVQPNKVTILADS 79
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 6-115 1.45e-31

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 108.75  E-value: 1.45e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   6 HCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADTVQ 85
Cdd:cd12152     2 KLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEDGEEKYFAVSGGFLEVTPNRVTILADEAE 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 1041610605  86 RAADLDEASAQAAVLAAEKALNEKGADFDY 115
Cdd:cd12152    82 RPEDIDVERAEEALERAEERLAQAKDEREK 111
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 3-137 2.06e-26

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 96.22  E-value: 2.06e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   3 MTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGgEAEVFYISGGFLEVQPNMVKVLAD 82
Cdd:PRK14735    1 MPIHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNG-VRTPFAISGGFMEVLPHRVTILAD 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1041610605  83 TVQRAADLDEASAQAAVLAAEKALNEKGADFDYGSATARLAEAAAQLRtVQQIRK 137
Cdd:PRK14735   80 TAERADEIDEARAEQARAEAEQRRRERQSEQDLALAEAKLRRAMVRLR-VAQLHK 133
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-115 1.55e-24

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 91.17  E-value: 1.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRlIKQGGEAEVFYISGGFLEVQPNMVKVL 80
Cdd:PRK13446    1 MAKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELT-YKKGGKTHYVAVNGGFAEVSNNKVTVL 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1041610605  81 ADTVQRAADLDEASAQAAVLAAEKALNEKGADFDY 115
Cdd:PRK13446   80 AETAERAEEIDVERARAALERAEQRLKKLTPEDDS 114
atpC PRK13449
ATP synthase F1 subunit epsilon;
2-88 4.28e-19

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 75.96  E-value: 4.28e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   2 AMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQ-GGEAEVFYISGGFLEVQPNMVKVL 80
Cdd:PRK13449    1 MAKLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSdGAAPEVFHVQGGFAEVNEKGLTIL 80


                  ....*...
gi 1041610605  81 ADTVQRAA 88
Cdd:PRK13449   81 AEHAVEAA 88
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-83 4.84e-19

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 75.83  E-value: 4.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVL 80
Cdd:PRK13442    2 AGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISAAVDGGFISFDSNKLTVL 81


                  ...
gi 1041610605  81 ADT 83
Cdd:PRK13442   82 AER 84
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 9-109 2.58e-17

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 72.87  E-value: 2.58e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   9 IVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVLADTVQRAA 88
Cdd:PRK13450    8 ILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILCDASEWPE 87

                          90       100
                  ....*....|....*....|.
gi 1041610605  89 DLDEASAQAAVLAAEKALNEK 109
Cdd:PRK13450   88 EIDIKRAENAKKRAEERLRKK 108
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 1-112 6.78e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 66.72  E-value: 6.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAmTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGpIRLIKQGGEAEVFYISGGFLEVQPNMVKVL 80
Cdd:PRK13448    1 MA-TFHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPG-ILTVTAGGNQQKIVVLGGLAEVSEKGLTVL 78

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1041610605  81 ADTVQRAADLDEASAQAAVLAAEKALNEKGAD 112
Cdd:PRK13448   79 ADVATSVADLDLAQFAATIAEMEAQLAGKVGD 110
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 1-92 1.10e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 65.97  E-value: 1.10e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAmTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEVFYISGGFLEVQPNMVKVL 80
Cdd:PRK14736    1 MA-TFHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIYVRGGFAEIGPTSVTVL 79

                          90
                  ....*....|..
gi 1041610605  81 ADtvqRAADLDE 92
Cdd:PRK14736   80 AE---RAAPVEE 88
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 8-111 2.34e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 65.54  E-value: 2.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   8 DIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRlIKQGGEAEVFYISGGFLEVQPNMVKVLADTVQRA 87
Cdd:PRK13452    9 DVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVN-VRKDQHTDVLYVSGGIVEVTPTRVTIMVDDMERA 87

                          90       100
                  ....*....|....*....|....
gi 1041610605  88 ADLDEASAQAAVLAAEKALNEKGA 111
Cdd:PRK13452   88 ENLNQAEAEKARARAKEVLKNPDA 111
atpE CHL00063
ATP synthase CF1 epsilon subunit
 3-91 1.96e-11

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 57.57  E-value: 1.96e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   3 MTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRlIKQGGEAEVFYISGGFLEVQPNMVKVLAD 82
Cdd:CHL00063    1 MTLNLRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLR-IRLNDQWLTMALMGGFARIGNNEITILVN 79


                  ....*....
gi 1041610605  83 TVQRAADLD 91
Cdd:CHL00063   80 DAEKGSDID 88
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-91 4.44e-11

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 56.42  E-value: 4.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRlIKQGGEAEVFYISGGFLEVQPNMVKVL 80
Cdd:PRK13444    2 MAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLE-IRKGEKLKRISVEGGFCEVKDNQISIL 80

                          90
                  ....*....|.
gi 1041610605  81 ADTVQRAADLD 91
Cdd:PRK13444   81 TDHGALKEDID 91
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-92 1.35e-10

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 55.31  E-value: 1.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRLIKQGGEAEvFYISGGFLEVQPNMVKVL 80
Cdd:PRK13443    1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQE-YAVTGGFAEINATSISVL 79

                          90
                  ....*....|..
gi 1041610605  81 AdtvQRAADLDE 92
Cdd:PRK13443   80 A---EKAIPVEE 88
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-109 1.34e-06

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 44.48  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   1 MAMTVHCDIVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRL-IKQGGEAEVFY-ISGGFLEVQPNMVK 78
Cdd:PRK01474    1 MNETILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVyIDDMHKSENTYlISGGVTEVTGNYIN 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1041610605  79 VLADTVQRAADLDEASAQAAVLAAEKALNEK 109
Cdd:PRK01474   81 IATETAINVTNLSEAEIATKLLDLQKTLSDQ 111
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 9-91 1.76e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 35.53  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610605   9 IVSAEGEIFSGLVEMVIAHGNLGDIGIAPGHAPLITDLKPGPIRlIKQGGEAEVFYISGGFLEVQPNMVKVLADTVQRAA 88
Cdd:PRK13451    5 IVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVK-IKSGDDEYEYKVADGFLHCDGKNVIIITEEAGREE 83


                  ...
gi 1041610605  89 DLD 91
Cdd:PRK13451   84 EIS 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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