NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1041610607|emb|CZT31700|]
View 

ATP synthase gamma chain [Pseudomonas cerasi]

Protein Classification

FoF1 ATP synthase subunit gamma( domain architecture ID 10792582)

FoF1 ATP synthase subunit gamma is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

EC:  7.1.2.2
Gene Ontology:  GO:0045261|GO:0005524|GO:0046933|GO:0042777
PubMed:  25730883|30888962|25667968|18216260|8951091
SCOP:  4000503

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-286 6.29e-169

F0F1 ATP synthase subunit gamma; Validated


:

Pssm-ID: 235535  Cd Length: 284  Bit Score: 468.82  E-value: 6.29e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANsEYRHPFMIERPVKRVGYVV 80
Cdd:PRK05621    1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVEREVKRVGYIV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAY 160
Cdd:PRK05621   80 VTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDAY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 161 LDGRIDRLSVVSNKFINTMTQQPTVEQLIPLVATPDQGlKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQA 240
Cdd:PRK05621  160 DNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEE-ETSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASEQA 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1041610607 241 ARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK05621  239 ARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284
 
Name Accession Description Interval E-value
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-286 6.29e-169

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 468.82  E-value: 6.29e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANsEYRHPFMIERPVKRVGYVV 80
Cdd:PRK05621    1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVEREVKRVGYIV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAY 160
Cdd:PRK05621   80 VTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDAY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 161 LDGRIDRLSVVSNKFINTMTQQPTVEQLIPLVATPDQGlKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQA 240
Cdd:PRK05621  160 DNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEE-ETSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASEQA 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1041610607 241 ARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK05621  239 ARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 1-286 1.15e-160

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 448.06  E-value: 1.15e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVV 80
Cdd:COG0224     1 MASLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYAEKLREVLAALAAASPEYDHPLLEEREVKRVGLIV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAY 160
Cdd:COG0224    81 ITSDRGLCGGFNSNVLKAAEELIKELQAEGKEVELIVVGRKGRDFFKRRGINVVAEFTGLSDKPSFEDAKEIAEELLDAF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 161 LDGRIDRLSVVSNKFINTMTQQPTVEQLIPL--VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAE 238
Cdd:COG0224   161 LAGEIDEVYLVYNRFVSAITQEPVVEQLLPLdpEELEEAEWETRADYIFEPSPEEILDALLPRYLESQIYQALLESAASE 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1041610607 239 QAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:COG0224   241 HAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGGAEAL 288
ATP-synt pfam00231
ATP synthase;
5-285 4.90e-142

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 400.75  E-value: 4.90e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   5 KEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVVSSD 84
Cdd:pfam00231   3 KEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPEDSHPLLERREVKKVGLIVITSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  85 RGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISH-LGEEPSINDLIGSVKVMLDAYLDG 163
Cdd:pfam00231  83 RGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGsLGDKPTFEEAAEIADELLDAFLAG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 164 RIDRLSVVSNKFINTMTQQPTVEQLIPL-VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAAR 242
Cdd:pfam00231 163 EIDEVYLVYNRFVSAISQEPTVEQLLPLdPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAAR 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1041610607 243 MIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAA 285
Cdd:pfam00231 243 MTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 2-286 8.34e-134

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 380.10  E-value: 8.34e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   2 AGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVV 81
Cdd:TIGR01146   1 ATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNVDHPLLKSREVKKVGILVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  82 SSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYL 161
Cdd:TIGR01146  81 TSDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDAFD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 162 DGRIDRLSVVSNKFINTMTQQPTVEQLIPLVA-TPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQA 240
Cdd:TIGR01146 161 AGEFDELYIVYNKFVSSISQEPTVKQLLPLSAqGPDEGFKFSQDYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQA 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1041610607 241 ARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:TIGR01146 241 ARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL 286
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 2-283 8.22e-120

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 344.56  E-value: 8.22e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   2 AGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVV 81
Cdd:cd12151     1 ASLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDDEDPPLLEKREVKKVLLIVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  82 SSDRGLCGGLNTNLFKTLVKDMavNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYL 161
Cdd:cd12151    81 TSDRGLCGGFNSNIIKAAEELI--KEADGKEVKLIVVGKKGRDYLKRRGYNIALPFSDIGDDPTYFEAASIIEELILDFL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 162 DGRIDRLSVVSNKFINTMTQQPTVEQLIPL--VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQ 239
Cdd:cd12151   159 NGEIDEVYIIYNKFKSAISQEPVVEQLLPLdkEEEEEESEGSRSDYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQ 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1041610607 240 AARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGA 283
Cdd:cd12151   239 AARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
 
Name Accession Description Interval E-value
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-286 6.29e-169

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 468.82  E-value: 6.29e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANsEYRHPFMIERPVKRVGYVV 80
Cdd:PRK05621    1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVEREVKRVGYIV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAY 160
Cdd:PRK05621   80 VTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDAY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 161 LDGRIDRLSVVSNKFINTMTQQPTVEQLIPLVATPDQGlKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQA 240
Cdd:PRK05621  160 DNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEEEE-ETSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASEQA 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1041610607 241 ARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK05621  239 ARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEAL 284
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 1-286 1.15e-160

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 448.06  E-value: 1.15e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVV 80
Cdd:COG0224     1 MASLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYAEKLREVLAALAAASPEYDHPLLEEREVKRVGLIV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAY 160
Cdd:COG0224    81 ITSDRGLCGGFNSNVLKAAEELIKELQAEGKEVELIVVGRKGRDFFKRRGINVVAEFTGLSDKPSFEDAKEIAEELLDAF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 161 LDGRIDRLSVVSNKFINTMTQQPTVEQLIPL--VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAE 238
Cdd:COG0224   161 LAGEIDEVYLVYNRFVSAITQEPVVEQLLPLdpEELEEAEWETRADYIFEPSPEEILDALLPRYLESQIYQALLESAASE 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1041610607 239 QAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:COG0224   241 HAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGGAEAL 288
ATP-synt pfam00231
ATP synthase;
5-285 4.90e-142

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 400.75  E-value: 4.90e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   5 KEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVVSSD 84
Cdd:pfam00231   3 KEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPEDSHPLLERREVKKVGLIVITSD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  85 RGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISH-LGEEPSINDLIGSVKVMLDAYLDG 163
Cdd:pfam00231  83 RGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGsLGDKPTFEEAAEIADELLDAFLAG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 164 RIDRLSVVSNKFINTMTQQPTVEQLIPL-VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAAR 242
Cdd:pfam00231 163 EIDEVYLVYNRFVSAISQEPTVEQLLPLdPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAAR 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1041610607 243 MIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAA 285
Cdd:pfam00231 243 MTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 2-286 8.34e-134

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 380.10  E-value: 8.34e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   2 AGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVV 81
Cdd:TIGR01146   1 ATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNVDHPLLKSREVKKVGILVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  82 SSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYL 161
Cdd:TIGR01146  81 TSDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDAFD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 162 DGRIDRLSVVSNKFINTMTQQPTVEQLIPLVA-TPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQA 240
Cdd:TIGR01146 161 AGEFDELYIVYNKFVSSISQEPTVKQLLPLSAqGPDEGFKFSQDYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQA 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1041610607 241 ARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:TIGR01146 241 ARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASAL 286
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 2-283 8.22e-120

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 344.56  E-value: 8.22e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   2 AGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVV 81
Cdd:cd12151     1 ASLKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDDEDPPLLEKREVKKVLLIVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  82 SSDRGLCGGLNTNLFKTLVKDMavNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYL 161
Cdd:cd12151    81 TSDRGLCGGFNSNIIKAAEELI--KEADGKEVKLIVVGKKGRDYLKRRGYNIALPFSDIGDDPTYFEAASIIEELILDFL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 162 DGRIDRLSVVSNKFINTMTQQPTVEQLIPL--VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQ 239
Cdd:cd12151   159 NGEIDEVYIIYNKFKSAISQEPVVEQLLPLdkEEEEEESEGSRSDYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQ 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1041610607 240 AARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGA 283
Cdd:cd12151   239 AARMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
PRK14111 PRK14111
F0F1 ATP synthase subunit gamma; Provisional
 1-286 2.04e-97

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184515  Cd Length: 290  Bit Score: 287.85  E-value: 2.04e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANS--EYRHPFMIERP-VKRVG 77
Cdd:PRK14111    1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVgaARVGPLLEKRPtVKRVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  78 YVVVSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVML 157
Cdd:PRK14111   81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 158 DAYLDGRIDRLSVVSNKFINTMTQQPTVEQLIPlVATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAA 237
Cdd:PRK14111  161 NGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLP-IEPPEISTTTVVDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIAS 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1041610607 238 EQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK14111  240 EHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASGAAAL 288
PRK13423 PRK13423
F0F1 ATP synthase subunit gamma; Provisional
 1-286 4.68e-94

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237384  Cd Length: 288  Bit Score: 279.25  E-value: 4.68e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVV 80
Cdd:PRK13423    1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREVKKALLVV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFG-------GNVVAAISHLGEEPSINDLIgsv 153
Cdd:PRK13423   81 VTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGliirknyGGVVANLTYETAALLAQELI--- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 154 kvmlDAYLDGRIDRLSVVSNKFINTMTQQPTVEQLIPLVATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVE 233
Cdd:PRK13423  158 ----EGYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEAADDEYLPEYIYEPSRDALLAELLPKHVEVQIYRALLE 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1041610607 234 NNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK13423  234 SVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAEAL 286
PRK13422 PRK13422
F0F1 ATP synthase subunit gamma; Provisional
 1-286 7.60e-93

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184046  Cd Length: 298  Bit Score: 276.55  E-value: 7.60e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVV 80
Cdd:PRK13422    1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGE---EPSINDLIGSVKVML 157
Cdd:PRK13422   81 TSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDkdkEGSIRAIGGAVKVML 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 158 DAYLDGRIDRLSVVSNKFINTMTQQPTVEQLIP---------LVATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVY 228
Cdd:PRK13422  161 DKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPiqdifsaeeIKANKEKATKGHWDYIYERDIEEVLNALCIRYIEAQVR 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1041610607 229 QAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK13422  241 GAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298
PRK14110 PRK14110
F0F1 ATP synthase subunit gamma; Provisional
 5-286 1.01e-73

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184514  Cd Length: 291  Bit Score: 227.73  E-value: 1.01e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   5 KEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVVVSSD 84
Cdd:PRK14110    7 RDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHIDRESHPLLERREEKNVDLVIITAD 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  85 RGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSV-KVMLDAYLDG 163
Cdd:PRK14110   87 RGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVgGILASRYIEE 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 164 RIDRLSVVSNKFINTMTQQPTVEQLIPL-VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAAR 242
Cdd:PRK14110  167 ETDAVYLINNEMITRATYKPKVRKFLPFeVEAQEKKLDELSVYNIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFAR 246

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1041610607 243 MIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK14110  247 MVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEAM 290
PRK13427 PRK13427
F0F1 ATP synthase subunit gamma; Provisional
 1-286 1.12e-71

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172049  Cd Length: 289  Bit Score: 222.51  E-value: 1.12e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMiERP--VKRVGY 78
Cdd:PRK13427    1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYL-RRPekIRTVAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  79 VVVSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLD 158
Cdd:PRK13427   80 LIITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFME 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 159 AYLDGRIDRLSVVSNKFINTMTQQPTVEQLIPL--VATPDQGLKHHwDYLYEPDAKELLDGLMVRYVESQVYQAVVENNA 236
Cdd:PRK13427  160 RFANESVDAVEIASTVYYSAASQKPETTRVLPLepPTAAAEGSVQD-DVVYEPSPEAILESLLPLVVKTAFLKAILEANA 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1041610607 237 AEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK13427  239 SEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGGADAL 288
PRK13426 PRK13426
F0F1 ATP synthase subunit gamma; Provisional
 1-285 1.44e-71

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237385  Cd Length: 291  Bit Score: 221.96  E-value: 1.44e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERPVKRVGYVV 80
Cdd:PRK13426    1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  81 VSSDRGLCGGLNTNLFKTLVKDMAVNRENGV-EIDLCVVGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVKVMLDA 159
Cdd:PRK13426   81 FSSNTSLCGGFNANIIKLLLQTIGEYRTLGQdNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLMEL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 160 YLDGRIDRLSVVSNKFINTMTQQPTVEQLIPL----VATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVENN 235
Cdd:PRK13426  161 FLEGEIDKVELIYHHFKSMGVQVLTRETYLPIdlsqEKNAEHAGGVANDYIIEPSADTVLNDLIPKLLSLKIYTALLDSN 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1041610607 236 AAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAA 285
Cdd:PRK13426  241 ASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGGSMA 290
PRK13424 PRK13424
F0F1 ATP synthase subunit gamma; Provisional
 1-285 4.28e-69

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172047  Cd Length: 291  Bit Score: 215.76  E-value: 4.28e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERP-VKRVGYV 79
Cdd:PRK13424    1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREeIKTCGIV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  80 VVSSDRGLCGGLNTNLFKTLVKDMAVNRENGVEIDLCVVGSKGAAFFRNFGGNVVAAI------------SHLGEEpsin 147
Cdd:PRK13424   81 LITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYadqmtsfdfqlaNSIGLE---- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 148 dligsvkvMLDAYLDGRIDRLSVVSNKFINTMTQQPTVEQLIPLVATP--DQGLKHHWDYLYEPDAKELLDGLMVRYVES 225
Cdd:PRK13424  157 --------VIDGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEaeEEEAGASSEYIYEPSVEGLLAELLPRFIKV 228

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 226 QVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAA 285
Cdd:PRK13424  229 QIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGGAEA 288
PRK13425 PRK13425
F0F1 ATP synthase subunit gamma; Provisional
 1-286 4.78e-68

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 139564  Cd Length: 291  Bit Score: 213.13  E-value: 4.78e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607   1 MAGAKEIRSKIASIKSTQKITSAMEKVAVSKMRKAQMRMAASRPYAERIRQVIGHLANANSEYRHPFMIERP-VKRVGYV 79
Cdd:PRK13425    1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSeVNKVLVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607  80 VVSSDRGLCGGLNTNLFKTLVKDM-----AVNRENGVEIdLCVvGSKGAAFFRNFGGNVVAAISHLGEEPSINDLIGSVK 154
Cdd:PRK13425   81 LITSDRGLCGAFNTNIIKLAQKVIhedyaALHAKGGVSM-ICA-GTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAE 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041610607 155 VMLDAYLDGRIDRLSVVSNKFINTMTQQPTVEQLIPlVATPDQGLKHHWDYLYEPDAKELLDGLMVRYVESQVYQAVVEN 234
Cdd:PRK13425  159 TASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLP-ITPEKPGAEGGSDYIYEPSPAAIIDELVPKHLNTQVWRMMLES 237

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1041610607 235 NAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286
Cdd:PRK13425  238 NAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADAL 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH