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Conserved domains on  [gi|285810341|tpg|DAA07126|]
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TPA: Rcr1p [Saccharomyces cerevisiae S288C]

Protein Classification

resistance to Congo red protein( domain architecture ID 10573925)

resistance to Congo red protein (RCR) regulates chitin deposition in the cell wall

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RCR pfam12273
Chitin synthesis regulation, resistance to Congo red; RCR proteins are ER membrane proteins ...
42-155 8.64e-26

Chitin synthesis regulation, resistance to Congo red; RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5.


:

Pssm-ID: 432443 [Multi-domain]  Cd Length: 113  Bit Score: 96.33  E-value: 8.64e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 285810341   42 WILFVLFVAAVILIILFTFVANRRRRRMGRAPIRGTAWL----TPPSYRQSQQQYtgtvqQRTDDYVPEYTETAnehdlG 117
Cdd:pfam12273   2 WVLFAIFIVLILLVLLGTYRINRRRRRRGLQPIYGTGWMgggpPPPSYGQSQQDP-----QPTGTYVPTYTPND-----G 71
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 285810341  118 YYDQRGEFHPNDkaAYVAPPPLVQE--CSSESVNSLERPP 155
Cdd:pfam12273  72 YYDQQGNFHNAG--SGLQPPQQAYQppTSSEGDPDYAPPA 109
 
Name Accession Description Interval E-value
RCR pfam12273
Chitin synthesis regulation, resistance to Congo red; RCR proteins are ER membrane proteins ...
42-155 8.64e-26

Chitin synthesis regulation, resistance to Congo red; RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5.


Pssm-ID: 432443 [Multi-domain]  Cd Length: 113  Bit Score: 96.33  E-value: 8.64e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 285810341   42 WILFVLFVAAVILIILFTFVANRRRRRMGRAPIRGTAWL----TPPSYRQSQQQYtgtvqQRTDDYVPEYTETAnehdlG 117
Cdd:pfam12273   2 WVLFAIFIVLILLVLLGTYRINRRRRRRGLQPIYGTGWMgggpPPPSYGQSQQDP-----QPTGTYVPTYTPND-----G 71
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 285810341  118 YYDQRGEFHPNDkaAYVAPPPLVQE--CSSESVNSLERPP 155
Cdd:pfam12273  72 YYDQQGNFHNAG--SGLQPPQQAYQppTSSEGDPDYAPPA 109
 
Name Accession Description Interval E-value
RCR pfam12273
Chitin synthesis regulation, resistance to Congo red; RCR proteins are ER membrane proteins ...
42-155 8.64e-26

Chitin synthesis regulation, resistance to Congo red; RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5.


Pssm-ID: 432443 [Multi-domain]  Cd Length: 113  Bit Score: 96.33  E-value: 8.64e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 285810341   42 WILFVLFVAAVILIILFTFVANRRRRRMGRAPIRGTAWL----TPPSYRQSQQQYtgtvqQRTDDYVPEYTETAnehdlG 117
Cdd:pfam12273   2 WVLFAIFIVLILLVLLGTYRINRRRRRRGLQPIYGTGWMgggpPPPSYGQSQQDP-----QPTGTYVPTYTPND-----G 71
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 285810341  118 YYDQRGEFHPNDkaAYVAPPPLVQE--CSSESVNSLERPP 155
Cdd:pfam12273  72 YYDQQGNFHNAG--SGLQPPQQAYQppTSSEGDPDYAPPA 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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