TPA: Mex67p [Saccharomyces cerevisiae S288C]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RRM_9 | pfam18444 | RNA recognition motif; The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the ... |
23-92 | 1.26e-32 | |||
RNA recognition motif; The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the principal mRNA export factor in Saccharomyces cerevisiae. Mex67 is a member of the NXF family of proteins and has conserved homologs through eukaryotes from yeast to humans. Although sequence conservation is poor between S. cerevisiae Mex67 and Homo sapiens NXF1, they do show functional complementarity. Mex67 and TAP/NXF1 are modular proteins that contain four structural domains: an N-terminal RNA recognition motif (RRM), a leucine rich repeat (LRR) domain, a nuclear transport factor 2-like domain (NTF2L) and an ubiquitin-associated domain (UBA). This entry describes the N-terminal RNA recognition motif (RRM) found in Mex67 proteins. : Pssm-ID: 408240 Cd Length: 70 Bit Score: 119.58 E-value: 1.26e-32
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TAP_C | smart00804 | C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF ... |
537-597 | 2.57e-21 | |||
C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain. : Pssm-ID: 197882 Cd Length: 63 Bit Score: 87.74 E-value: 2.57e-21
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PPP1R42 super family | cl42388 | protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
155-256 | 9.52e-08 | |||
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation. The actual alignment was detected with superfamily member cd21340: Pssm-ID: 455733 [Multi-domain] Cd Length: 220 Bit Score: 52.87 E-value: 9.52e-08
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Name | Accession | Description | Interval | E-value | |||
RRM_9 | pfam18444 | RNA recognition motif; The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the ... |
23-92 | 1.26e-32 | |||
RNA recognition motif; The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the principal mRNA export factor in Saccharomyces cerevisiae. Mex67 is a member of the NXF family of proteins and has conserved homologs through eukaryotes from yeast to humans. Although sequence conservation is poor between S. cerevisiae Mex67 and Homo sapiens NXF1, they do show functional complementarity. Mex67 and TAP/NXF1 are modular proteins that contain four structural domains: an N-terminal RNA recognition motif (RRM), a leucine rich repeat (LRR) domain, a nuclear transport factor 2-like domain (NTF2L) and an ubiquitin-associated domain (UBA). This entry describes the N-terminal RNA recognition motif (RRM) found in Mex67 proteins. Pssm-ID: 408240 Cd Length: 70 Bit Score: 119.58 E-value: 1.26e-32
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TAP_C | smart00804 | C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF ... |
537-597 | 2.57e-21 | |||
C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain. Pssm-ID: 197882 Cd Length: 63 Bit Score: 87.74 E-value: 2.57e-21
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TAP_C | pfam03943 | TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling ... |
550-596 | 2.48e-13 | |||
TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling. The structure of the C-terminal domain is composed of four helices. The structure is related to the UBA domain. Pssm-ID: 461102 Cd Length: 49 Bit Score: 64.48 E-value: 2.48e-13
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UBA_TAP-C | cd14342 | UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF ... |
548-596 | 1.12e-11 | |||
UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF family of mRNA nuclear export factors including vertebrate NXF1 (also called tip-associated protein or mRNA export factor TAP), NXF2 (also called cancer/testis antigen CT39 or TAP-like protein TAPL-2), Caenorhabditis elegans NXF1 (ceNXF1), Saccharomyces cerevisiae mRNA nuclear export factor Mex67p and similar proteins. NXF proteins can stimulate nuclear export of mRNAs and facilitate the export of unspliced viral mRNA containing the constitutive transport element. It is a multi-domain protein with a nuclear localization sequence (NLS), a non-canonical mRNA-binding domain, and four leucine-rich repeats (LLR) at the N-terminal region. Its C-terminal part contains a NTF2-like domain and a ubiquitin-associated (UBA)-like domain, joined by flexible Pro-rich linker. Caenorhabditis elegans NXF1 are essential for the nuclear export of poly(A)+mRNA. In budding yeast, Mex67p binds mRNAs through its adaptor Yra1/REF. It also interacts directly with Nab2, an essential shuttling mRNA-binding protein required for export. Moreover, Mex67p associates with both nuclear pore protein (nucleoporin) FG repeats and Hpr1, a component of the TREX/THO complex linking transcription and export. Pssm-ID: 270527 Cd Length: 51 Bit Score: 59.90 E-value: 1.12e-11
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PPP1R42 | cd21340 | protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
155-256 | 9.52e-08 | |||
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation. Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 52.87 E-value: 9.52e-08
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
165-257 | 9.78e-05 | |||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.92 E-value: 9.78e-05
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LRR_9 | pfam14580 | Leucine-rich repeat; |
183-247 | 1.48e-03 | |||
Leucine-rich repeat; Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 39.75 E-value: 1.48e-03
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Name | Accession | Description | Interval | E-value | |||
RRM_9 | pfam18444 | RNA recognition motif; The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the ... |
23-92 | 1.26e-32 | |||
RNA recognition motif; The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the principal mRNA export factor in Saccharomyces cerevisiae. Mex67 is a member of the NXF family of proteins and has conserved homologs through eukaryotes from yeast to humans. Although sequence conservation is poor between S. cerevisiae Mex67 and Homo sapiens NXF1, they do show functional complementarity. Mex67 and TAP/NXF1 are modular proteins that contain four structural domains: an N-terminal RNA recognition motif (RRM), a leucine rich repeat (LRR) domain, a nuclear transport factor 2-like domain (NTF2L) and an ubiquitin-associated domain (UBA). This entry describes the N-terminal RNA recognition motif (RRM) found in Mex67 proteins. Pssm-ID: 408240 Cd Length: 70 Bit Score: 119.58 E-value: 1.26e-32
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TAP_C | smart00804 | C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF ... |
537-597 | 2.57e-21 | |||
C-terminal domain of vertebrate Tap protein; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain. Pssm-ID: 197882 Cd Length: 63 Bit Score: 87.74 E-value: 2.57e-21
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TAP_C | pfam03943 | TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling ... |
550-596 | 2.48e-13 | |||
TAP C-terminal domain; The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling. The structure of the C-terminal domain is composed of four helices. The structure is related to the UBA domain. Pssm-ID: 461102 Cd Length: 49 Bit Score: 64.48 E-value: 2.48e-13
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UBA_TAP-C | cd14342 | UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF ... |
548-596 | 1.12e-11 | |||
UBA-like domain found in nuclear RNA export factor NXF1, NXF2 and similar proteins; The NXF family of mRNA nuclear export factors including vertebrate NXF1 (also called tip-associated protein or mRNA export factor TAP), NXF2 (also called cancer/testis antigen CT39 or TAP-like protein TAPL-2), Caenorhabditis elegans NXF1 (ceNXF1), Saccharomyces cerevisiae mRNA nuclear export factor Mex67p and similar proteins. NXF proteins can stimulate nuclear export of mRNAs and facilitate the export of unspliced viral mRNA containing the constitutive transport element. It is a multi-domain protein with a nuclear localization sequence (NLS), a non-canonical mRNA-binding domain, and four leucine-rich repeats (LLR) at the N-terminal region. Its C-terminal part contains a NTF2-like domain and a ubiquitin-associated (UBA)-like domain, joined by flexible Pro-rich linker. Caenorhabditis elegans NXF1 are essential for the nuclear export of poly(A)+mRNA. In budding yeast, Mex67p binds mRNAs through its adaptor Yra1/REF. It also interacts directly with Nab2, an essential shuttling mRNA-binding protein required for export. Moreover, Mex67p associates with both nuclear pore protein (nucleoporin) FG repeats and Hpr1, a component of the TREX/THO complex linking transcription and export. Pssm-ID: 270527 Cd Length: 51 Bit Score: 59.90 E-value: 1.12e-11
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PPP1R42 | cd21340 | protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
155-256 | 9.52e-08 | |||
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation. Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 52.87 E-value: 9.52e-08
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
165-257 | 9.78e-05 | |||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.92 E-value: 9.78e-05
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LRR_9 | pfam14580 | Leucine-rich repeat; |
183-247 | 1.48e-03 | |||
Leucine-rich repeat; Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 39.75 E-value: 1.48e-03
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
165-228 | 3.60e-03 | |||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 39.92 E-value: 3.60e-03
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
165-228 | 6.50e-03 | |||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 39.15 E-value: 6.50e-03
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Blast search parameters | ||||
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