NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|391737992|sp|E1SLW4|]
View 

RecName: Full=Outer membrane protein assembly factor BamC; Flags: Precursor

Protein Classification

outer membrane protein assembly factor BamC( domain architecture ID 10536162)

outer membrane protein assembly factor BamC is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 42-350 1.66e-119

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


:

Pssm-ID: 429129  Cd Length: 297  Bit Score: 347.38  E-value: 1.66e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   42 TPLVVPAGLDAPRLSREFDIPKLgdnAERDVVGPRLDVRPPLQVLPLAPGTRIQDGVDSITVLVESNqddidlAQEIHDT 121
Cdd:pfam06804   2 APLKVPAGLILPEQNGEYDIPAV---ANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENS------KDELWQQ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  122 LLKFLDDKSINVARDD--SGVIVTDWIENEEVIGksWFRDKVYQIRQRYEFDTVVKDHGRSGSITIELVDHEEGldgVDD 199
Cdd:pfam06804  73 VNDFLAENNIPIAKRDdaSGTLETDWITNQESLW--NRSDEDVQLRQRYRFTISVKPHGRQAALSVSLLDLEEG---DDV 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  200 SIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQELLNGRGIKTELGFDSDENTAFVAEASFDQVWRRMDKVLPLLGFQ 279
Cdd:pfam06804 148 KEVTSPADKQRYEADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFT 227

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 391737992  280 VRDLDQQLATYFVDYE-PDGGFWASLWGdnDELPLEEGPYQIRLEPMGERTAITLMDNEANPLPTETVTQMY 350
Cdd:pfam06804 228 VEDRDRSQGTYFVKYKaPSSGFWSSLGG--DELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
 
Name Accession Description Interval E-value
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 42-350 1.66e-119

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 347.38  E-value: 1.66e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   42 TPLVVPAGLDAPRLSREFDIPKLgdnAERDVVGPRLDVRPPLQVLPLAPGTRIQDGVDSITVLVESNqddidlAQEIHDT 121
Cdd:pfam06804   2 APLKVPAGLILPEQNGEYDIPAV---ANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENS------KDELWQQ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  122 LLKFLDDKSINVARDD--SGVIVTDWIENEEVIGksWFRDKVYQIRQRYEFDTVVKDHGRSGSITIELVDHEEGldgVDD 199
Cdd:pfam06804  73 VNDFLAENNIPIAKRDdaSGTLETDWITNQESLW--NRSDEDVQLRQRYRFTISVKPHGRQAALSVSLLDLEEG---DDV 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  200 SIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQELLNGRGIKTELGFDSDENTAFVAEASFDQVWRRMDKVLPLLGFQ 279
Cdd:pfam06804 148 KEVTSPADKQRYEADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFT 227

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 391737992  280 VRDLDQQLATYFVDYE-PDGGFWASLWGdnDELPLEEGPYQIRLEPMGERTAITLMDNEANPLPTETVTQMY 350
Cdd:pfam06804 228 VEDRDRSQGTYFVKYKaPSSGFWSSLGG--DELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 2-358 3.04e-90

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 274.92  E-value: 3.04e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   2 KHNRLAIAALApVLILVGCSTPLERRQaSGGFDYLEQPAPTPLVVPAGLDAPRLSREFDIPKLGDnaerdVVGPRLDVRP 81
Cdd:COG3317    2 LSVRLVLLLLL-VLLLAGCSSLQRYFR-SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIPAGGA-----ATGSEYDIRP 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  82 PLQVLPLAPGTRIQDGVDSITVLVESNqddidlAQEIHDTLLKFLDDKSINVARDD--SGVIVTDWIENEEVIGKSWFR- 158
Cdd:COG3317   75 PAQVLPLVDGVRIERSGDQRWLVVDAS------PEQLWPQLREFWQENGFTIASEDpaAGVMETDWAENRAKIPDFIRRt 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 159 --DKVYQIRQRYEFDTVVKDH-GRSGSITIELVDHEEGLDGVDDSIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQE 235
Cdd:COG3317  149 llDGLYSTGERDRFRTRVERGvGGTTEIYVSHRGMEEVGDQKDSTVWQPRPADPRLEAEMLNRLMVYLGADEEQAAAALA 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 236 LLNGRGIKTELGFDSDENTAFVAEASFDQVWRRMDKVLPLLGFQVRDLDQQLATYFVDY-----EPDGGFWASLWGDNDE 310
Cdd:COG3317  229 AAQVGGIRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYvdpddGEKPGFWSRLFGSDPE 308

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 391737992 311 LPleEGPYQIRLEPMGERTAITLMDNEANPLPTETVTQMYNRFAELLQ 358
Cdd:COG3317  309 LK--AGDYRVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-341 1.18e-46

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 162.05  E-value: 1.18e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   1 MKHNRLAIAALAPVLILVGCST-PLERRQASGGFDYLEQPAPTPLVVPAGLDAPRLSREFDIPKLGDNAErdvVGPRLDV 79
Cdd:PRK11679   6 QKSRVAKVAGVSLVMLLAACSSdQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGA---VGKALDI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  80 RPPLQVLPLAPGTRIQDGVDSITVLVESNQDDIDLAQEIhdtlLKFLDDKSINVA-RDDSGV-IVTDWIEneevigksWF 157
Cdd:PRK11679  83 RPPAQPLALLSGARTQFSGDTATLLLENSPENSKLWPQV----VSVLQAKNYPIAkRDDASQtLTTDWVT--------WN 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 158 R-DKVYQIRQRYEFDtvVKDHGRSGSITIELVDHEEGldgvdDSIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQEL 236
Cdd:PRK11679 151 RaDEDVQYRGRYQIS--VKPQGYQQALTVKLLDLEQG-----GKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAAN 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 237 LNGRGIKTELGFDsdeNTAF---VAEASFDQVWRRMDKVLPLLGFQVRDLDQQLATYFVDY-EPDGGFWASLWGDNDELP 312
Cdd:PRK11679 224 RLVGQIDVQSGAD---DTGLpvlIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYkPPSDSFWQELGAKDPELA 300

                        330       340
                 ....*....|....*....|....*....
gi 391737992 313 leEGPYQIRLEPMGERTAITLMDNEANPL 341
Cdd:PRK11679 301 --SGDYKLQVGDLDNRSSLQFIDPKGHPL 327
 
Name Accession Description Interval E-value
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 42-350 1.66e-119

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 347.38  E-value: 1.66e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   42 TPLVVPAGLDAPRLSREFDIPKLgdnAERDVVGPRLDVRPPLQVLPLAPGTRIQDGVDSITVLVESNqddidlAQEIHDT 121
Cdd:pfam06804   2 APLKVPAGLILPEQNGEYDIPAV---ANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENS------KDELWQQ 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  122 LLKFLDDKSINVARDD--SGVIVTDWIENEEVIGksWFRDKVYQIRQRYEFDTVVKDHGRSGSITIELVDHEEGldgVDD 199
Cdd:pfam06804  73 VNDFLAENNIPIAKRDdaSGTLETDWITNQESLW--NRSDEDVQLRQRYRFTISVKPHGRQAALSVSLLDLEEG---DDV 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  200 SIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQELLNGRGIKTELGFDSDENTAFVAEASFDQVWRRMDKVLPLLGFQ 279
Cdd:pfam06804 148 KEVTSPADKQRYEADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFT 227

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 391737992  280 VRDLDQQLATYFVDYE-PDGGFWASLWGdnDELPLEEGPYQIRLEPMGERTAITLMDNEANPLPTETVTQMY 350
Cdd:pfam06804 228 VEDRDRSQGTYFVKYKaPSSGFWSSLGG--DELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 2-358 3.04e-90

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 274.92  E-value: 3.04e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   2 KHNRLAIAALApVLILVGCSTPLERRQaSGGFDYLEQPAPTPLVVPAGLDAPRLSREFDIPKLGDnaerdVVGPRLDVRP 81
Cdd:COG3317    2 LSVRLVLLLLL-VLLLAGCSSLQRYFR-SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIPAGGA-----ATGSEYDIRP 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  82 PLQVLPLAPGTRIQDGVDSITVLVESNqddidlAQEIHDTLLKFLDDKSINVARDD--SGVIVTDWIENEEVIGKSWFR- 158
Cdd:COG3317   75 PAQVLPLVDGVRIERSGDQRWLVVDAS------PEQLWPQLREFWQENGFTIASEDpaAGVMETDWAENRAKIPDFIRRt 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 159 --DKVYQIRQRYEFDTVVKDH-GRSGSITIELVDHEEGLDGVDDSIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQE 235
Cdd:COG3317  149 llDGLYSTGERDRFRTRVERGvGGTTEIYVSHRGMEEVGDQKDSTVWQPRPADPRLEAEMLNRLMVYLGADEEQAAAALA 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 236 LLNGRGIKTELGFDSDENTAFVAEASFDQVWRRMDKVLPLLGFQVRDLDQQLATYFVDY-----EPDGGFWASLWGDNDE 310
Cdd:COG3317  229 AAQVGGIRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYvdpddGEKPGFWSRLFGSDPE 308

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 391737992 311 LPleEGPYQIRLEPMGERTAITLMDNEANPLPTETVTQMYNRFAELLQ 358
Cdd:COG3317  309 LK--AGDYRVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-341 1.18e-46

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 162.05  E-value: 1.18e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992   1 MKHNRLAIAALAPVLILVGCST-PLERRQASGGFDYLEQPAPTPLVVPAGLDAPRLSREFDIPKLGDNAErdvVGPRLDV 79
Cdd:PRK11679   6 QKSRVAKVAGVSLVMLLAACSSdQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGA---VGKALDI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992  80 RPPLQVLPLAPGTRIQDGVDSITVLVESNQDDIDLAQEIhdtlLKFLDDKSINVA-RDDSGV-IVTDWIEneevigksWF 157
Cdd:PRK11679  83 RPPAQPLALLSGARTQFSGDTATLLLENSPENSKLWPQV----VSVLQAKNYPIAkRDDASQtLTTDWVT--------WN 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 158 R-DKVYQIRQRYEFDtvVKDHGRSGSITIELVDHEEGldgvdDSIVLTDADRRRYAIDMLNNAIAYMNFERQQRQATQEL 236
Cdd:PRK11679 151 RaDEDVQYRGRYQIS--VKPQGYQQALTVKLLDLEQG-----GKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAAN 223

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391737992 237 LNGRGIKTELGFDsdeNTAF---VAEASFDQVWRRMDKVLPLLGFQVRDLDQQLATYFVDY-EPDGGFWASLWGDNDELP 312
Cdd:PRK11679 224 RLVGQIDVQSGAD---DTGLpvlIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYkPPSDSFWQELGAKDPELA 300

                        330       340
                 ....*....|....*....|....*....
gi 391737992 313 leEGPYQIRLEPMGERTAITLMDNEANPL 341
Cdd:PRK11679 301 --SGDYKLQVGDLDNRSSLQFIDPKGHPL 327
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH