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Conserved domains on  [gi|46228631|gb|EAK89501|]
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centromere associated Kip3p, kinesin like P-loop NTpase that belongs to the TRAFAC class GTpase superfamily [Cryptosporidium parvum Iowa II]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
29-381 4.19e-173

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 494.51  E-value: 4.19e-173
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEAVCNeNTIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENI 108
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSK-LTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHI 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 109 FTpGFKCSCFAYGQTGSGKTYTMMGSENTaysnslqrkTERELGIFELAVNNIFELLEQSE-HENKEVYVSFFEIYCDKL 187
Cdd:cd01367  80 FE-GGKATCFAYGQTGSGKTYTMGGDFSG---------QEESKGIYALAARDVFRLLNKLPyKDNLGVTVSFFEIYGGKV 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 188 YDLLNNQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIfsttkes 267
Cdd:cd01367 150 FDLLNRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRG------- 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 268 tlqsplspKFITYGKMVFIDLAGSERGADTVHSTRQTQQDGAGINRSLLALKECIRALhDQQSSHVPFRQSELTKVLKDV 347
Cdd:cd01367 223 --------TNKLHGKLSFVDLAGSERGADTSSADRQTRMEGAEINKSLLALKECIRAL-GQNKAHIPFRGSKLTQVLKDS 293
                       330       340       350
                ....*....|....*....|....*....|....*
gi 46228631 348 FVGN-AHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01367 294 FIGEnSKTCMIATISPGASSCEHTLNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
29-381 4.19e-173

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 494.51  E-value: 4.19e-173
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEAVCNeNTIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENI 108
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSK-LTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHI 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 109 FTpGFKCSCFAYGQTGSGKTYTMMGSENTaysnslqrkTERELGIFELAVNNIFELLEQSE-HENKEVYVSFFEIYCDKL 187
Cdd:cd01367  80 FE-GGKATCFAYGQTGSGKTYTMGGDFSG---------QEESKGIYALAARDVFRLLNKLPyKDNLGVTVSFFEIYGGKV 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 188 YDLLNNQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIfsttkes 267
Cdd:cd01367 150 FDLLNRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRG------- 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 268 tlqsplspKFITYGKMVFIDLAGSERGADTVHSTRQTQQDGAGINRSLLALKECIRALhDQQSSHVPFRQSELTKVLKDV 347
Cdd:cd01367 223 --------TNKLHGKLSFVDLAGSERGADTSSADRQTRMEGAEINKSLLALKECIRAL-GQNKAHIPFRGSKLTQVLKDS 293
                       330       340       350
                ....*....|....*....|....*....|....*
gi 46228631 348 FVGN-AHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01367 294 FIGEnSKTCMIATISPGASSCEHTLNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
35-382 3.30e-112

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 338.78  E-value: 3.30e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    35 RKRPLTDNEISRNDVDVVEAVcnentIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIFTpGFK 114
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVE-----SVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLE-GYN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   115 CSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLYDLL-- 191
Cdd:pfam00225  75 VTIFAYGQTGSGKTYTMEGSDE-------------QPGIIPRALEDLFDRIQKTKERSEfSVKVSYLEIYNEKIRDLLsp 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   192 --NNQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIFSTTKESTl 269
Cdd:pfam00225 142 snKNKRKLRIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEES- 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   270 qsplspkfITYGKMVFIDLAGSERGADTVHSTRQTQQDGAGINRSLLALKECIRALHDQQSSHVPFRQSELTKVLKDVFV 349
Cdd:pfam00225 221 --------VKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSLG 292
                         330       340       350
                  ....*....|....*....|....*....|...
gi 46228631   350 GNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKE 382
Cdd:pfam00225 293 GNSKTLMIANISPSSSNYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
30-389 2.02e-103

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 316.44  E-value: 2.02e-103
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631     30 ITVVVRKRPLTDNEISRNDVDVVEaVCNENTIYVhelkTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:smart00129   2 IRVVVRVRPLNKREKSRKSPSVVP-FPDKVGKTL----TVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVL 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    110 TpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLY 188
Cdd:smart00129  77 E-GYNATIFAYGQTGSGKTYTMIGTPD-------------SPGIIPRALKDLFEKIDKREEGWQfSVKVSYLEIYNEKIR 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    189 DLLN--NQKLVSaMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIFSTTKE 266
Cdd:smart00129 143 DLLNpsSKKLEI-REDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSG 221
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    267 STLQSPLSpkfitygkmvFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQQ-SSHVPFRQSELTKVLK 345
Cdd:smart00129 222 SGKASKLN----------LVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHSkSRHIPYRDSKLTRLLQ 290
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 46228631    346 DVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVI 389
Cdd:smart00129 291 DSLGGNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIV 334
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
30-403 5.21e-57

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 201.51  E-value: 5.21e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:COG5059   7 SPLKSRLSSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLY 188
Cdd:COG5059  87 L-GYNCTVFAYGQTGSGKTYTMSGTEE-------------EPGIIPLSLKELFSKLEDLSMTKDfAVSISYLEIYNEKIY 152
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 189 DLLNNQKL-VSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRI--FSTTK 265
Cdd:COG5059 153 DLLSPNEEsLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNkvSGTSE 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 266 ESTLQsplspkfitygkmvFIDLAGSERGADTVHSTrQTQQDGAGINRSLLALKECIRALHDQQSS-HVPFRQSELTKVL 344
Cdd:COG5059 233 TSKLS--------------LVDLAGSERAARTGNRG-TRLKEGASINKSLLTLGNVINALGDKKKSgHIPYRESKLTRLL 297
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 46228631 345 KDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVIRSDTFHSDKYSSKH 403
Cdd:COG5059 298 QDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIK 356
PLN03188 PLN03188
kinesin-12 family protein; Provisional
22-389 1.33e-43

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 168.19  E-value: 1.33e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    22 KNKLNRTKITVVVRKRPLTDNEISRNdvdVVEAVCNENTIyvhelktkvdctkyIDKHSYTFDRVYSEQINNRELYEDII 101
Cdd:PLN03188   92 ENGVSDSGVKVIVRMKPLNKGEEGEM---IVQKMSNDSLT--------------INGQTFTFDSIADPESTQEDIFQLVG 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   102 RPLTENIFTpGFKCSCFAYGQTGSGKTYTMMGSENT----AYSNSLQRKTERelgIFELAVNNIFEllEQSEHENKEV-- 175
Cdd:PLN03188  155 APLVENCLA-GFNSSVFAYGQTGSGKTYTMWGPANGlleeHLSGDQQGLTPR---VFERLFARINE--EQIKHADRQLky 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   176 --YVSFFEIYCDKLYDLLN-NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAIL 252
Cdd:PLN03188  229 qcRCSFLEIYNEQITDLLDpSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVF 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   253 QIEIRSRIFSTTKE-STLQSplspkfityGKMVFIDLAGSERGADTVHSTRQTQQDGaGINRSLLALKECIRALHDQQSS 331
Cdd:PLN03188  309 TCVVESRCKSVADGlSSFKT---------SRINLVDLAGSERQKLTGAAGDRLKEAG-NINRSLSQLGNLINILAEISQT 378
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 46228631   332 ----HVPFRQSELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVI 389
Cdd:PLN03188  379 gkqrHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVV 440
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
29-381 4.19e-173

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 494.51  E-value: 4.19e-173
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEAVCNeNTIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENI 108
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSK-LTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHI 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 109 FTpGFKCSCFAYGQTGSGKTYTMMGSENTaysnslqrkTERELGIFELAVNNIFELLEQSE-HENKEVYVSFFEIYCDKL 187
Cdd:cd01367  80 FE-GGKATCFAYGQTGSGKTYTMGGDFSG---------QEESKGIYALAARDVFRLLNKLPyKDNLGVTVSFFEIYGGKV 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 188 YDLLNNQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIfsttkes 267
Cdd:cd01367 150 FDLLNRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRG------- 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 268 tlqsplspKFITYGKMVFIDLAGSERGADTVHSTRQTQQDGAGINRSLLALKECIRALhDQQSSHVPFRQSELTKVLKDV 347
Cdd:cd01367 223 --------TNKLHGKLSFVDLAGSERGADTSSADRQTRMEGAEINKSLLALKECIRAL-GQNKAHIPFRGSKLTQVLKDS 293
                       330       340       350
                ....*....|....*....|....*....|....*
gi 46228631 348 FVGN-AHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01367 294 FIGEnSKTCMIATISPGASSCEHTLNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
35-382 3.30e-112

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 338.78  E-value: 3.30e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    35 RKRPLTDNEISRNDVDVVEAVcnentIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIFTpGFK 114
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVE-----SVDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLE-GYN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   115 CSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLYDLL-- 191
Cdd:pfam00225  75 VTIFAYGQTGSGKTYTMEGSDE-------------QPGIIPRALEDLFDRIQKTKERSEfSVKVSYLEIYNEKIRDLLsp 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   192 --NNQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIFSTTKESTl 269
Cdd:pfam00225 142 snKNKRKLRIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEES- 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   270 qsplspkfITYGKMVFIDLAGSERGADTVHSTRQTQQDGAGINRSLLALKECIRALHDQQSSHVPFRQSELTKVLKDVFV 349
Cdd:pfam00225 221 --------VKTGKLNLVDLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSKHIPYRDSKLTRLLQDSLG 292
                         330       340       350
                  ....*....|....*....|....*....|...
gi 46228631   350 GNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKE 382
Cdd:pfam00225 293 GNSKTLMIANISPSSSNYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
30-389 2.02e-103

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 316.44  E-value: 2.02e-103
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631     30 ITVVVRKRPLTDNEISRNDVDVVEaVCNENTIYVhelkTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:smart00129   2 IRVVVRVRPLNKREKSRKSPSVVP-FPDKVGKTL----TVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVL 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    110 TpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLY 188
Cdd:smart00129  77 E-GYNATIFAYGQTGSGKTYTMIGTPD-------------SPGIIPRALKDLFEKIDKREEGWQfSVKVSYLEIYNEKIR 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    189 DLLN--NQKLVSaMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIFSTTKE 266
Cdd:smart00129 143 DLLNpsSKKLEI-REDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSG 221
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    267 STLQSPLSpkfitygkmvFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQQ-SSHVPFRQSELTKVLK 345
Cdd:smart00129 222 SGKASKLN----------LVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHSkSRHIPYRDSKLTRLLQ 290
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 46228631    346 DVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVI 389
Cdd:smart00129 291 DSLGGNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIV 334
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
29-381 4.56e-101

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 309.96  E-value: 4.56e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEiSRNDVDVVEaVCNENTIYVHELKTKVDctkyiDKHSYTFDRVYSEQINNRELYEDIIRPLTENI 108
Cdd:cd00106   1 NVRVAVRVRPLNGRE-ARSAKSVIS-VDGGKSVVLDPPKNRVA-----PPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSA 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 109 FTpGFKCSCFAYGQTGSGKTYTMMGsentaysnslqrKTERELGIFELAVNNIFELLEQSEHENKE--VYVSFFEIYCDK 186
Cdd:cd00106  74 LE-GYNGTIFAYGQTGSGKTYTMLG------------PDPEQRGIIPRALEDIFERIDKRKETKSSfsVSASYLEIYNEK 140
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 187 LYDLLN--NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIFSTT 264
Cdd:cd00106 141 IYDLLSpvPKKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREKS 220
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 265 KEStlqsplspkfITYGKMVFIDLAGSERGADTVHStRQTQQDGAGINRSLLALKECIRALHDQQSSHVPFRQSELTKVL 344
Cdd:cd00106 221 GES----------VTSSKLNLVDLAGSERAKKTGAE-GDRLKEGGNINKSLSALGKVISALADGQNKHIPYRDSKLTRLL 289
                       330       340       350
                ....*....|....*....|....*....|....*..
gi 46228631 345 KDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd00106 290 QDSLGGNSKTIMIACISPSSENFEETLSTLRFASRAK 326
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
29-383 1.89e-83

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 264.19  E-value: 1.89e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEavCNENTIYVHELKTKvdctkyidkhSYTFDRVYSEQINNRELYEDIIRPLTeNI 108
Cdd:cd01374   1 KITVTVRVRPLNSREIGINEQVAWE--IDNDTIYLVEPPST----------SFTFDHVFGGDSTNREVYELIAKPVV-KS 67
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 109 FTPGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENKEVYVSFFEIYCDKLY 188
Cdd:cd01374  68 ALEGYNGTIFAYGQTSSGKTFTMSGDED-------------EPGIIPLAIRDIFSKIQDTPDREFLLRVSYLEIYNEKIN 134
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 189 DLL--NNQKLVSaMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIrsrifsttkE 266
Cdd:cd01374 135 DLLspTSQNLKI-RDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITI---------E 204
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 267 STLQSPLSPKFITYGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHD-QQSSHVPFRQSELTKVLK 345
Cdd:cd01374 205 SSERGELEEGTVRVSTLNLIDLAGSERAAQT-GAAGVRRKEGSHINKSLLTLGTVISKLSEgKVGGHIPYRDSKLTRILQ 283
                       330       340       350
                ....*....|....*....|....*....|....*...
gi 46228631 346 DVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKEL 383
Cdd:cd01374 284 PSLGGNSRTAIICTITPAESHVEETLNTLKFASRAKKI 321
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
30-383 2.56e-76

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 246.49  E-value: 2.56e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVCN---------ENTIYVHELKTKVDCTKYIDKH-SYTFDRVYSEQINNRELYED 99
Cdd:cd01370   2 LTVAVRVRPFSEKEKNEGFRRIVKVMDNhmlvfdpkdEEDGFFHGGSNNRDRRKRRNKElKYVFDRVFDETSTQEEVYEE 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 100 IIRPLTENIFTpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVS 178
Cdd:cd01370  82 TTKPLVDGVLN-GYNATVFAYGATGAGKTHTMLGTPQ-------------EPGLMVLTMKELFKRIESLKDEKEfEVSMS 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 179 FFEIYCDKLYDLLNNQ-KLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIR 257
Cdd:cd01370 148 YLEIYNETIRDLLNPSsGPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVR 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 258 SRifSTTKESTLQsplspkfITYGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQ--QSSHVPF 335
Cdd:cd01370 228 QQ--DKTASINQQ-------VRQGKLSLIDLAGSERASAT-NNRGQRLKEGANINRSLLALGNCINALADPgkKNKHIPY 297
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*...
gi 46228631 336 RQSELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKEL 383
Cdd:cd01370 298 RDSKLTRLLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
30-379 1.77e-75

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 244.16  E-value: 1.77e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVHelktkvdctkyiDKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:cd01372   3 VRVAVRVRPLLPKEIIEGCRICVSFVPGEPQVTVG------------TDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLF 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMmGSENTAYSNslqrktERELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLY 188
Cdd:cd01372  71 E-GYNATVLAYGQTGSGKTYTM-GTAYTAEED------EEQVGIIPRAIQHIFKKIEKKKDTFEfQLKVSFLEIYNEEIR 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 189 DLLN----NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRIFSTT 264
Cdd:cd01372 143 DLLDpetdKKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKNGP 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 265 KEStLQSPLSPKFITyGKMVFIDLAGSERGADTVhSTRQTQQDGAGINRSLLALKECIRALHDQQ--SSHVPFRQSELTK 342
Cdd:cd01372 223 IAP-MSADDKNSTFT-SKFHFVDLAGSERLKRTG-ATGDRLKEGISINSGLLALGNVISALGDESkkGAHVPYRDSKLTR 299
                       330       340       350
                ....*....|....*....|....*....|....*..
gi 46228631 343 VLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHR 379
Cdd:cd01372 300 LLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
29-389 8.31e-73

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 238.02  E-value: 8.31e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVHELKTKVDCTKYIDKHSYTFDRVY----SEQIN---NRELYEDII 101
Cdd:cd01365   2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQADKNNKATREVPKSFSFDYSYwshdSEDPNyasQEQVYEDLG 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 102 RPLTENIFTpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK--EVYVSF 179
Cdd:cd01365  82 EELLQHAFE-GYNVCLFAYGQTGSGKSYTMMGTQE-------------QPGIIPRLCEDLFSRIADTTNQNMsySVEVSY 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 180 FEIYCDKLYDLLNNQKL-----VSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQI 254
Cdd:cd01365 148 MEIYNEKVRDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTI 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 255 EIR-SRIFSTTKESTLQSplspkfityGKMVFIDLAGSERgADTVHSTRQTQQDGAGINRSLLALKECIRALHDQ----- 328
Cdd:cd01365 228 VLTqKRHDAETNLTTEKV---------SKISLVDLAGSER-ASSTGATGDRLKEGANINKSLTTLGKVISALADMssgks 297
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46228631 329 --QSSHVPFRQSELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVI 389
Cdd:cd01365 298 kkKSSFIPYRDSVLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVV 360
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
30-381 5.46e-70

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 229.66  E-value: 5.46e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVHelKTKVDCTKYidKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:cd01371   3 VKVVVRCRPLNGKEKAAGALQIVDVDEKRGQVSVR--NPKATANEP--PKTFTFDAVFDPNSKQLDVYDETARPLVDSVL 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMMGsentaysnslQRKTERELGIFELAVNNIFELLEQSEhENKE--VYVSFFEIYCDKL 187
Cdd:cd01371  79 E-GYNGTIFAYGQTGTGKTYTMEG----------KREDPELRGIIPNSFAHIFGHIARSQ-NNQQflVRVSYLEIYNEEI 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 188 YDLL--NNQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEI-RSRIFSTT 264
Cdd:cd01371 147 RDLLgkDQTKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIeCSEKGEDG 226
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 265 KEStlqsplspkfITYGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQQSSHVPFRQSELTKVL 344
Cdd:cd01371 227 ENH----------IRVGKLNLVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLL 295
                       330       340       350
                ....*....|....*....|....*....|....*..
gi 46228631 345 KDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01371 296 QDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAK 332
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
30-389 3.51e-67

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 222.97  E-value: 3.51e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVhelKTKVDCTKYIDKhSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:cd01364   4 IQVVVRCRPFNLRERKASSHSVVEVDPVRKEVSV---RTGGLADKSSTK-TYTFDMVFGPEAKQIDVYRSVVCPILDEVL 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMMGSENTAYSNSLQrkTERELGIFELAVNNIFELLEQSEHEnKEVYVSFFEIYCDKLYD 189
Cdd:cd01364  80 M-GYNCTIFAYGQTGTGKTYTMEGDRSPNEEYTWE--LDPLAGIIPRTLHQLFEKLEDNGTE-YSVKVSYLEIYNEELFD 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 190 LL----NNQKLVSAMENS--KREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRsrifst 263
Cdd:cd01364 156 LLspssDVSERLRMFDDPrnKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIH------ 229
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 264 TKEstlQSPLSPKFITYGKMVFIDLAGSER----GADtvhstRQTQQDGAGINRSLLALKECIRALHDqQSSHVPFRQSE 339
Cdd:cd01364 230 IKE---TTIDGEELVKIGKLNLVDLAGSENigrsGAV-----DKRAREAGNINQSLLTLGRVITALVE-RAPHVPYRESK 300
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|
gi 46228631 340 LTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVI 389
Cdd:cd01364 301 LTRLLQDSLGGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKPEV 350
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
28-381 8.01e-66

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 218.35  E-value: 8.01e-66
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  28 TKITVVVRKRPLTDNEISRNDVDVVEAVcNENTIyvhELKTKVDctkyidKHSYTFDRVYSEQINNRELYEDIIRPLTEN 107
Cdd:cd01369   2 CNIKVVCRFRPLNELEVLQGSKSIVKFD-PEDTV---VIATSET------GKTFSFDRVFDPNTTQEDVYNFAAKPIVDD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 108 IFTpGFKCSCFAYGQTGSGKTYTMMGSENTAYSNslqrkterelGIFELAVNNIFELLEQSEhENKE--VYVSFFEIYCD 185
Cdd:cd01369  72 VLN-GYNGTIFAYGQTSSGKTYTMEGKLGDPESM----------GIIPRIVQDIFETIYSMD-ENLEfhVKVSYFEIYME 139
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 186 KLYDLLNNQKL-VSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRifsTT 264
Cdd:cd01369 140 KIRDLLDVSKTnLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE---NV 216
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 265 KESTLQSplspkfityGKMVFIDLAGSERGADTVHSTrQTQQDGAGINRSLLALKECIRALHDQQSSHVPFRQSELTKVL 344
Cdd:cd01369 217 ETEKKKS---------GKLYLVDLAGSEKVSKTGAEG-AVLDEAKKINKSLSALGNVINALTDGKKTHIPYRDSKLTRIL 286
                       330       340       350
                ....*....|....*....|....*....|....*..
gi 46228631 345 KDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01369 287 QDSLGGNSRTTLIICCSPSSYNESETLSTLRFGQRAK 323
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
29-381 2.01e-64

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 214.77  E-value: 2.01e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVhelktkvdCTKYIDKHSYTFDRVYSEQINNRELYEDIiRPLTENI 108
Cdd:cd01366   3 NIRVFCRVRPLLPSEENEDTSHITFPDEDGQTIEL--------TSIGAKQKEFSFDKVFDPEASQEDVFEEV-SPLVQSA 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 109 FTpGFKCSCFAYGQTGSGKTYTMMGsentaysnslqrkTERELGIFELAVNNIFELLEqsEHENK----EVYVSFFEIYC 184
Cdd:cd01366  74 LD-GYNVCIFAYGQTGSGKTYTMEG-------------PPESPGIIPRALQELFNTIK--ELKEKgwsyTIKASMLEIYN 137
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 185 DKLYDLLN-----NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSR 259
Cdd:cd01366 138 ETIRDLLApgnapQKKLEIRHDSEKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGR 217
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 260 iFSTTKEstlqsplspkfITYGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHdQQSSHVPFRQSE 339
Cdd:cd01366 218 -NLQTGE-----------ISVGKLNLVDLAGSERLNKS-GATGDRLKETQAINKSLSALGDVISALR-QKQSHIPYRNSK 283
                       330       340       350       360
                ....*....|....*....|....*....|....*....|..
gi 46228631 340 LTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01366 284 LTYLLQDSLGGNSKTLMFVNISPAESNLNETLNSLRFASKVN 325
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
29-377 4.50e-60

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 203.78  E-value: 4.50e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTDNEISRNDVDVVEaVCNENTIYVHELKTKVDCTKYI----DKHSYTFDRVYSEQINNRELYEDIIRPL 104
Cdd:cd01368   2 PVKVYLRVRPLSKDELESEDEGCIE-VINSTTVVLHPPKGSAANKSERnggqKETKFSFSKVFGPNTTQKEFFQGTALPL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 105 TENIFTpGFKCSCFAYGQTGSGKTYTMMGSEntaysnslqrkteRELGIFELAVNNIFELLEqseheNKEVYVSFFEIYC 184
Cdd:cd01368  81 VQDLLH-GKNGLLFTYGVTNSGKTYTMQGSP-------------GDGGILPRSLDVIFNSIG-----GYSVFVSYIEIYN 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 185 DKLYDLLN--------NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIei 256
Cdd:cd01368 142 EYIYDLLEpspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTI-- 219
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 257 rsRIFSTTKESTLQSPLSPKFITYGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQQ----SSH 332
Cdd:cd01368 220 --KLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRT-QNTGERLKEAGNINTSLMTLGTCIEVLRENQlqgtNKM 296
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*
gi 46228631 333 VPFRQSELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYA 377
Cdd:cd01368 297 VPFRDSKLTHLFQNYFDGEGKASMIVNVNPCASDYDETLHVMKFS 341
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
30-403 5.21e-57

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 201.51  E-value: 5.21e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVCNENTIYVHELKTKVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:COG5059   7 SPLKSRLSSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQSEHENK-EVYVSFFEIYCDKLY 188
Cdd:COG5059  87 L-GYNCTVFAYGQTGSGKTYTMSGTEE-------------EPGIIPLSLKELFSKLEDLSMTKDfAVSISYLEIYNEKIY 152
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 189 DLLNNQKL-VSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRI--FSTTK 265
Cdd:COG5059 153 DLLSPNEEsLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNkvSGTSE 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 266 ESTLQsplspkfitygkmvFIDLAGSERGADTVHSTrQTQQDGAGINRSLLALKECIRALHDQQSS-HVPFRQSELTKVL 344
Cdd:COG5059 233 TSKLS--------------LVDLAGSERAARTGNRG-TRLKEGASINKSLLTLGNVINALGDKKKSgHIPYRESKLTRLL 297
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 46228631 345 KDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVIRSDTFHSDKYSSKH 403
Cdd:COG5059 298 QDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIK 356
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
30-393 2.85e-56

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 193.49  E-value: 2.85e-56
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEAVcNENTIYVHELKTKVdctkyidkhsYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:cd01373   3 VKVFVRIRPPAEREGDGEYGQCLKKL-SSDTLVLHSKPPKT----------FTFDHVADSNTNQESVFQSVGKPIVESCL 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMMG--SENTAYSNSLQRKTERelgIFELavnnIFELL--EQSEHENKEVYV---SFFEI 182
Cdd:cd01373  72 S-GYNGTIFAYGQTGSGKTYTMWGpsESDNESPHGLRGVIPR---IFEY----LFSLIqrEKEKAGEGKSFLckcSFLEI 143
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 183 YCDKLYDLLN-NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSRif 261
Cdd:cd01373 144 YNEQIYDLLDpASRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESW-- 221
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 262 stTKESTLQSplspkfITYGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQ---QSSHVPFRQS 338
Cdd:cd01373 222 --EKKACFVN------IRTSRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALVDVahgKQRHVCYRDS 292
                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....*
gi 46228631 339 ELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVIRSDT 393
Cdd:cd01373 293 KLTFLLRDSLGGNAKTAIIANVHPSSKCFGETLSTLRFAQRAKLIKNKAVVNEDT 347
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
29-381 1.62e-54

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 188.56  E-value: 1.62e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  29 KITVVVRKRPLTD--NEISRNDVDvveavcnENTIYVHELKTKVD--CTKYIDKHSYTFDRVYsEQINNRELYEDIIRPL 104
Cdd:cd01375   1 KVQAFVRVRPTDDfaHEMIKYGED-------GKSISIHLKKDLRRgvVNNQQEDWSFKFDGVL-HNASQELVYETVAKDV 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 105 TENIFTpGFKCSCFAYGQTGSGKTYTMMGSeNTAYSNSlqrkterelGIFELAVNNIFELLEQSEHENKEVYVSFFEIYC 184
Cdd:cd01375  73 VSSALA-GYNGTIFAYGQTGAGKTFTMTGG-TENYKHR---------GIIPRALQQVFRMIEERPTKAYTVHVSYLEIYN 141
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 185 DKLYDLLNNQKLV-------SAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIr 257
Cdd:cd01375 142 EQLYDLLSTLPYVgpsvtpmTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHL- 220
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 258 srifsttkESTLQSPLSPKFITyGKMVFIDLAGSERGADTvHSTRQTQQDGAGINRSLLALKECIRALHDQQSSHVPFRQ 337
Cdd:cd01375 221 --------EAHSRTLSSEKYIT-SKLNLVDLAGSERLSKT-GVEGQVLKEATYINKSLSFLEQAIIALSDKDRTHVPFRQ 290
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....
gi 46228631 338 SELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01375 291 SKLTHVLRDSLGGNCNTVMVANIYGEAAQLEETLSTLRFASRVK 334
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
30-381 5.53e-54

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 186.55  E-value: 5.53e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  30 ITVVVRKRPLTDNEISRNDVDVVEaVCNENTIYVhelktkVDCTKYIDKHSYTFDRVYSEQINNRELYEDIIRPLTENIF 109
Cdd:cd01376   2 VRVAVRVRPFVDGTAGASDPSCVS-GIDSCSVEL------ADPRNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 110 TpGFKCSCFAYGQTGSGKTYTMMGSENtaysnslqrkterELGIFELAVNNIFELLEQsEHENKEVYVSFFEIYCDKLYD 189
Cdd:cd01376  75 E-GQNATVFAYGSTGAGKTFTMLGSPE-------------QPGLMPLTVMDLLQMTRK-EAWALSFTMSYLEIYQEKILD 139
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 190 LLN-NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAILQIEIRSrifsttkest 268
Cdd:cd01376 140 LLEpASKELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQ---------- 209
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 269 lQSPLSPKFITYGKMVFIDLAGSERGADTVHSTRQTQQDGAgINRSLLALKECIRALhDQQSSHVPFRQSELTKVLKDVF 348
Cdd:cd01376 210 -RERLAPFRQRTGKLNLIDLAGSEDNRRTGNEGIRLKESGA-INSSLFVLSKVVNAL-NKNLPRIPYRDSKLTRLLQDSL 286
                       330       340       350
                ....*....|....*....|....*....|...
gi 46228631 349 VGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVK 381
Cdd:cd01376 287 GGGSRCIMVANIAPERTFYQDTLSTLNFAARSR 319
PLN03188 PLN03188
kinesin-12 family protein; Provisional
22-389 1.33e-43

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 168.19  E-value: 1.33e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    22 KNKLNRTKITVVVRKRPLTDNEISRNdvdVVEAVCNENTIyvhelktkvdctkyIDKHSYTFDRVYSEQINNRELYEDII 101
Cdd:PLN03188   92 ENGVSDSGVKVIVRMKPLNKGEEGEM---IVQKMSNDSLT--------------INGQTFTFDSIADPESTQEDIFQLVG 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   102 RPLTENIFTpGFKCSCFAYGQTGSGKTYTMMGSENT----AYSNSLQRKTERelgIFELAVNNIFEllEQSEHENKEV-- 175
Cdd:PLN03188  155 APLVENCLA-GFNSSVFAYGQTGSGKTYTMWGPANGlleeHLSGDQQGLTPR---VFERLFARINE--EQIKHADRQLky 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   176 --YVSFFEIYCDKLYDLLN-NQKLVSAMENSKREVVVKDLTERLIKTREDLLSVISKGLEYRRTAQNSMNDMSSRSHAIL 252
Cdd:PLN03188  229 qcRCSFLEIYNEQITDLLDpSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVF 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   253 QIEIRSRIFSTTKE-STLQSplspkfityGKMVFIDLAGSERGADTVHSTRQTQQDGaGINRSLLALKECIRALHDQQSS 331
Cdd:PLN03188  309 TCVVESRCKSVADGlSSFKT---------SRINLVDLAGSERQKLTGAAGDRLKEAG-NINRSLSQLGNLINILAEISQT 378
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 46228631   332 ----HVPFRQSELTKVLKDVFVGNAHSVMIANIGPCYSCSEQTLNTLRYAHRVKELRKKSVI 389
Cdd:PLN03188  379 gkqrHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVV 440
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
74-326 5.68e-07

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 49.65  E-value: 5.68e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631  74 KYIDKHSYTFDRVYSEQINNRELYEdIIRPLTENIFTPGFKCSCFAYGQTGSGKTYTMMGsentaysnslqrkterelgi 153
Cdd:cd01363  13 IYRDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGYNNQSIFAYGESGAGKTETMKG-------------------- 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 154 felavnnifelleqsehenkeVYVSFFEIYCDKLYDLLNNqklvSAMENSKREVVVKDLTERLIKTredllsviskgLEY 233
Cdd:cd01363  72 ---------------------VIPYLASVAFNGINKGETE----GWVYLTEITVTLEDQILQANPI-----------LEA 115
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631 234 RRTAQNSMNDMSSRSHAILQIeirsrifsttkestlqsplspkfitygkmvFIDLAGSERgadtvhstrqtqqdgagINR 313
Cdd:cd01363 116 FGNAKTTRNENSSRFGKFIEI------------------------------LLDIAGFEI-----------------INE 148
                       250
                ....*....|...
gi 46228631 314 SLLALKECIRALH 326
Cdd:cd01363 149 SLNTLMNVLRATR 161
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
29-191 1.37e-06

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 47.99  E-value: 1.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631    29 KITVVVRKRPLTDNEISRNDVDVveavCNENTIYVHElktkvdctkyidKHSYTFDRVYSEQINNRELYEDiIRPLTENI 108
Cdd:pfam16796  21 NIRVFARVRPELLSEAQIDYPDE----TSSDGKIGSK------------NKSFSFDRVFPPESEQEDVFQE-ISQLVQSC 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46228631   109 FTpGFKCSCFAYGQTGSGKTYTMMGSentaysnslqrkterelgifelAVNNIFELL-EQSEHENKEVYVSFFEIYCDKL 187
Cdd:pfam16796  84 LD-GYNVCIFAYGQTGSGSNDGMIPR----------------------AREQIFRFIsSLKKGWKYTIELQFVEIYNESS 140

                  ....
gi 46228631   188 YDLL 191
Cdd:pfam16796 141 QDLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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