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Conserved domains on  [gi|84378314|gb|EAP95172|]
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hypothetical protein V12B01_19171 [Vibrio splendidus 12B01]

Protein Classification

DUF4266 domain-containing protein( domain architecture ID 10624097)

DUF4266 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4266 pfam14086
Domain of unknown function (DUF4266); This presumed lipoprotein domain is functionally ...
 113-158 1.11e-03

Domain of unknown function (DUF4266); This presumed lipoprotein domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 50 amino acids in length.


:

Pssm-ID: 433707  Cd Length: 50  Bit Score: 35.23  E-value: 1.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 84378314   113 VKPWEKGTLAQKEMKPGGTvPEFDVFSEKVFAYKQGSVGGSGVGGG 158
Cdd:pfam14086   1 VKPYERGNLADPEMALDRD-PLEEKFEEHVYSSREGAGGGGGKTGG 45
 
Name Accession Description Interval E-value
DUF4266 pfam14086
Domain of unknown function (DUF4266); This presumed lipoprotein domain is functionally ...
 113-158 1.11e-03

Domain of unknown function (DUF4266); This presumed lipoprotein domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 50 amino acids in length.


Pssm-ID: 433707  Cd Length: 50  Bit Score: 35.23  E-value: 1.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 84378314   113 VKPWEKGTLAQKEMKPGGTvPEFDVFSEKVFAYKQGSVGGSGVGGG 158
Cdd:pfam14086   1 VKPYERGNLADPEMALDRD-PLEEKFEEHVYSSREGAGGGGGKTGG 45
 
Name Accession Description Interval E-value
DUF4266 pfam14086
Domain of unknown function (DUF4266); This presumed lipoprotein domain is functionally ...
 113-158 1.11e-03

Domain of unknown function (DUF4266); This presumed lipoprotein domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 50 amino acids in length.


Pssm-ID: 433707  Cd Length: 50  Bit Score: 35.23  E-value: 1.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 84378314   113 VKPWEKGTLAQKEMKPGGTvPEFDVFSEKVFAYKQGSVGGSGVGGG 158
Cdd:pfam14086   1 VKPYERGNLADPEMALDRD-PLEEKFEEHVYSSREGAGGGGGKTGG 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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