|
Name |
Accession |
Description |
Interval |
E-value |
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
1-1036 |
0e+00 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 1151.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 1 MLSRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMS 80
Cdd:COG0841 2 NLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYIT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 81 SKSaNDGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNgeYDDQFLINYVN 160
Cdd:COG0841 82 STS-SEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSDD--LDELELSDYAE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 161 LNIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAapyanpQEVQFNLVTKG 240
Cdd:COG0841 159 RNIKDRLERVPGVGQVQIFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGG------GDREYTVRTNG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 241 RLETADEFENVVLRANqDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFP 320
Cdd:COG0841 233 RLKTPEEFENIVIRTN-DGSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASLP 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 321 EGVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGL 400
Cdd:COG0841 312 EGVELTIVYDQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFAL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 401 ILAIGIVVDDAILVIENVDTTMAKDptISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIA 480
Cdd:COG0841 392 VLAIGIVVDDAIVVVENIERHMEEG--LSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIA 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 481 VVISSINALTLSPALCSLVLKQGGGNT-ARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTST 559
Cdd:COG0841 470 LLISLFVALTLTPALCARLLKPHPKGKkGRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLALSVLLFGRLPT 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 560 AFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAFmtGASASNGASLFIKLHDWDMRNald 639
Cdd:COG0841 550 EFFPEEDQGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFSG--GGSGSNSGTIFVTLKPWDERD--- 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 640 gqHSAQAISQRINGRAAtELPQAIVFAMGPPAvPGMGAASGFEFVLEdtlGRSRTDLAMVMNDVIAEANKQPEISHTFST 719
Cdd:COG0841 625 --RSADEIIARLREKLA-KIPGARVFVFQPPA-GGLGSGAPIEVQLQ---GDDLEELAAAAEKLLAALRQIPGLVDVRSD 697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 720 FRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRFHVRSSNGEMI 799
Cdd:COG0841 698 LQLGKPELQLDIDREKAAALGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVRTPDGEMV 777
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 800 PLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAE-VLPQGYQYEWTGMAYQEVLAGNQAIFAF 878
Cdd:COG0841 778 PLSSVATIEEGTGPSSINRYNGQRSVTVSANLAPGVSLGEALAAIEELAAElKLPPGVSIEFTGQAEEEQESFSSLGLAF 857
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 879 ALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKVEREEKd 958
Cdd:COG0841 858 LLALLLVYLVLAAQFESFIQPLIILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEG- 936
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84379819 959 ASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQRKREK 1036
Cdd:COG0841 937 MSLREAILEAARLRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDRLRRR 1014
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
2-1032 |
0e+00 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 1033.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 2 LSRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSS 81
Cdd:TIGR00915 1 MAKFFIDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 82 KSANDGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNL 161
Cdd:TIGR00915 81 SSDSDGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVIGLVSDDGSMTKEDLSDYAAS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 162 NIKDQLARVSGISEVNVLGGgEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAAPYANPQEVQFNLVTKGR 241
Cdd:TIGR00915 161 NMVDPLSRLEGVGDVQLFGS-QYAMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLGGLPAVPGQQLNATIIAQTR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 242 LETADEFENVVLRANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPE 321
Cdd:TIGR00915 240 LQTPEQFENILLKVNTDGSQVRLKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFPQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLI 401
Cdd:TIGR00915 320 GMKYVYPYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 402 LAIGIVVDDAILVIENVDTTMAkDPTISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAV 481
Cdd:TIGR00915 400 LAIGLLVDDAIVVVENVERVMA-EEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAM 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 482 VISSINALTLSPALCSLVLKQG-----GGNTARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKT 556
Cdd:TIGR00915 479 ALSVLVALILTPALCATMLKPIekgehHEKKGGFFGWFNRMFDSSTHGYENGVGKILRRRGRYLLVYVLLVGGMVFLFVR 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 557 TSTAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLE--MVEQEPGVDGVTLVNGYAFmtGASASNGASLFIKLHDWDM 634
Cdd:TIGR00915 559 LPTSFLPDEDQGVFMTIVQLPAGATAERTQAVLAQVTKylLAKEKANVESVFTVNGFSF--AGRGQNMGMAFIRLKDWEE 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 635 RNAldGQHSAQAISQRINGRAATeLPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQPEIS 714
Cdd:TIGR00915 637 RTG--KENSVFAIAGRATGHFMQ-IKDAMVIAFVPPAILELGNATGFDFFLQDRAGLGHEALLQARNQLLGLAAQNPALT 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 715 HTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRFHVRSS 794
Cdd:TIGR00915 714 RVRPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINKWYVRNA 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 795 NGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEvLPQGYQYEWTGMAYQEVLAGNQA 874
Cdd:TIGR00915 794 SGEMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQAMAAMEAIAQK-LPPGFGFSWTGMSYEERLSGSQA 872
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 875 IFAFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKvER 954
Cdd:TIGR00915 873 PALYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAK-EL 951
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84379819 955 EEKDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQR 1032
Cdd:TIGR00915 952 MAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVRR 1029
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
2-1030 |
0e+00 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 988.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 2 LSRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSS 81
Cdd:pfam00873 1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 82 KSaNDGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNL 161
Cdd:pfam00873 81 QS-SYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPDGSYTQTDLRDYADT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 162 NIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIgaapyANPQEvQFNLVTKGR 241
Cdd:pfam00873 160 NIKPQLSRVPGVGDVQLFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQL-----EGQGL-QALIRAQGQ 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 242 LETADEFENVVLRaNQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPE 321
Cdd:pfam00873 234 LQSAEDFEKIIVK-NQDGSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQ 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLI 401
Cdd:pfam00873 313 GVEIVVVYDTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLV 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 402 LAIGIVVDDAILVIENVDTTMAKDPTiSPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAV 481
Cdd:pfam00873 393 LAIGLVVDDAIVVVENIERVLEENGL-KPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAI 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 482 VISSINALTLSPALCSLVLKQG-GGNTARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTA 560
Cdd:pfam00873 472 LLSVLVALTLTPALCATLLKPRrEPKHGGFFRWFNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGSVWLFVRIPTE 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 561 FVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAFMTGASASNGASLFIKLHDWDMRNALDG 640
Cdd:pfam00873 552 FLPEEDEGVFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAVTGFAFSGDNNGPNSGDAFISLKPWKERPGPEK 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 641 qhSAQAISQRINgRAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTL-GRSRTDLAMVMNDVIAEANKQPEISHTFST 719
Cdd:pfam00873 632 --SVQALIERLR-KALKQIPGANVFLFQPIQLRGLGTISGFRSDLQVKIfGDDLDALDEARNQILAALAQLPGLSDVRSD 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 720 FRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRFHVRSSNGEMI 799
Cdd:pfam00873 709 GQEDQPQLQVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVRNPYGKMI 788
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 800 PLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEV-LPQGYQYEWTGMAYQEVLAGNQAIFAF 878
Cdd:pfam00873 789 PLSAFAKIEWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQVkLPPGYGYTWTGQFEQEQLAGNSLPILI 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 879 ALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKVEREEKD 958
Cdd:pfam00873 869 ALALLVVFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFANELREQEG 948
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84379819 959 ASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFV 1030
Cdd:pfam00873 949 KSLEEAILEACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLF 1020
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
2-1036 |
0e+00 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 839.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 2 LSRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSS 81
Cdd:PRK15127 1 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 82 KSANDGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNL 161
Cdd:PRK15127 81 NSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 162 NIKDQLARVSGISEVNVLGGgEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAAPYANPQEVQFNLVTKGR 241
Cdd:PRK15127 161 NMKDPISRTSGVGDVQLFGS-QYAMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 242 LETADEFENVVLRANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPE 321
Cdd:PRK15127 240 LTSTEEFGKILLKVNQDGSRVRLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLI 401
Cdd:PRK15127 320 GLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 402 LAIGIVVDDAILVIENVDTTMAKDpTISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAV 481
Cdd:PRK15127 400 LAIGLLVDDAIVVVENVERVMAEE-GLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAM 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 482 VISSINALTLSPALCSLVLK-----QGGGNTARWYQAFNRGLESVTNKY-GQIAGFLVKKGVLLFTFFVVALAAVTYFAK 555
Cdd:PRK15127 479 ALSVLVALILTPALCATMLKpiakgDHGEGKKGFFGWFNRMFEKSTHHYtDSVGNILRSTGRYLVLYLIIVVGMAYLFVR 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 556 TTSTaFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLE--MVEQEPGVDGVTLVNGYAFmTGASASNGASlFIKLHDWD 633
Cdd:PRK15127 559 LPSS-FLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDyyLTKEKNNVESVFAVNGFGF-AGRGQNTGIA-FVSLKDWA 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 634 MRNAldGQHSAQAISQRINGrAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQPEi 713
Cdd:PRK15127 636 DRPG--EENKVEAITMRATR-AFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLGEAAKHPD- 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 714 shTFSTFRAN----VPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRF 789
Cdd:PRK15127 712 --MLVGVRPNgledTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDW 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 790 HVRSSNGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEvLPQGYQYEWTGMAYQEVL 869
Cdd:PRK15127 790 YVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEELASK-LPTGVGYDWTGMSYQERL 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 870 AGNQAIFAFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEF 949
Cdd:PRK15127 869 SGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEF 948
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 950 AKVEREEKDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAF 1029
Cdd:PRK15127 949 AKDLMDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVV 1028
|
....*..
gi 84379819 1030 VQRKREK 1036
Cdd:PRK15127 1029 VRRRFSR 1035
|
|
| PRK09577 |
PRK09577 |
multidrug efflux RND transporter permease subunit; |
2-1032 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169981 [Multi-domain] Cd Length: 1032 Bit Score: 817.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 2 LSRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSS 81
Cdd:PRK09577 1 MARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 82 KSANdGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNL 161
Cdd:PRK09577 81 TSSA-GQASLSLTFKQGVNADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 162 NIKDQLARVSGISEVNVLGGgEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAAPYANPQEVQFNLVTKGR 241
Cdd:PRK09577 160 NVLQALRRVEGVGKVQFWGA-EYAMRIWPDPVKLAALGLTASDIASAVRAHNARVTIGDIGRSAVPDSAPIAATVFADAP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 242 LETADEFENVVLRANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPE 321
Cdd:PRK09577 239 LKTPEDFGAIALRARADGSALYLRDVARIEFGGNDYNYPSYVNGKTATGMGIKLAPGSNAVATEKRVRATMDELSRYFPP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLI 401
Cdd:PRK09577 319 GVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 402 LAIGIVVDDAILVIENVDTTMAKDpTISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAV 481
Cdd:PRK09577 399 LAIGILVDDAIVVVENVERLMVEE-GLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSI 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 482 VISSINALTLSPALCSLVLK---QGGGNTARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTS 558
Cdd:PRK09577 478 GFSAFLALSLTPALCATLLKpvdGDHHEKRGFFGWFNRFVARSTQRYATRVGAILKRPLRWLVVYGALTAAAALLFTRLP 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 559 TAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAFMtgASASNGASLFIKLHDWDMRNAL 638
Cdd:PRK09577 558 TAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFALGGFNLY--GEGPNGGMIFVTLKDWKERKAA 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 639 DgQHsAQAISQRINGRAATeLPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQPEISHTFS 718
Cdd:PRK09577 636 R-DH-VQAIVARINERFAG-TPNTTVFAMNSPALPDLGSTSGFDFRLQDRGGLGYAAFVAAREQLLAEGAKDPALTDLMF 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 719 TFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFtMFGKNFR-VTMQADSEHRSSMDDLQRFHVRSSNGE 797
Cdd:PRK09577 713 AGTQDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDF-MHGSQVRrVIVQADGRHRLDPDDVKKLRVRNAQGE 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 798 MIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEvLPQGYQYEWTGMAYQEVLAGNQAIFA 877
Cdd:PRK09577 792 MVPLAAFATLHWTLGPPQLTRYNGYPSFTINGSAAPGHSSGEAMAAIERIAAT-LPAGIGYAWSGQSFEERLSGAQAPML 870
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 878 FALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKvEREEK 957
Cdd:PRK09577 871 FALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAK-DLVAQ 949
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84379819 958 DASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQR 1032
Cdd:PRK09577 950 RMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVVGR 1024
|
|
| PRK10555 |
PRK10555 |
multidrug efflux RND transporter permease AcrD; |
2-1033 |
0e+00 |
|
multidrug efflux RND transporter permease AcrD;
Pssm-ID: 182544 [Multi-domain] Cd Length: 1037 Bit Score: 815.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 2 LSRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSS 81
Cdd:PRK10555 1 MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 82 KSANDGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNL 161
Cdd:PRK10555 81 QSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVAS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 162 NIKDQLARVSGISEVNVLGGgEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAAPYANPQEVQFNLVTKGR 241
Cdd:PRK10555 161 NIQDPLSRVNGVGDIDAYGS-QYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 242 LETADEFENVVLRANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPE 321
Cdd:PRK10555 240 LQTPEQFRDITLRVNQDGSEVTLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLNRLDELAQYFPH 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLI 401
Cdd:PRK10555 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 402 LAIGIVVDDAILVIENVDTTMAKDpTISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAV 481
Cdd:PRK10555 400 LAIGLLVDDAIVVVENVERIMSEE-GLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAM 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 482 VISSINALTLSPALCSLVLK---QGGGNTAR-WYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTT 557
Cdd:PRK10555 479 VLSVLVAMILTPALCATLLKplkKGEHHGQKgFFGWFNRMFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRL 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 558 STAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLE--MVEQEPGVDGVTLVNGYAfmTGASASNGASLFIKLHDWDMR 635
Cdd:PRK10555 559 PTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKyyFTHEKDNVMSVFATVGSG--PGGNGQNVARMFIRLKDWDER 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 636 NALDGqhSAQAISQRInGRAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQPEISH 715
Cdd:PRK10555 637 DSKTG--TSFAIIERA-TKAFNKIKEARVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAKNPELTR 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 716 TFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRFHVRSSN 795
Cdd:PRK10555 714 VRHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVRNKD 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 796 GEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEvLPQGYQYEWTGMAYQEVLAGNQAI 875
Cdd:PRK10555 794 GGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMESLVKQ-LPNGFGLEWTAMSYQERLSGAQAP 872
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 876 FAFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKvERE 955
Cdd:PRK10555 873 ALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFAN-EMN 951
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84379819 956 EKDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQRK 1033
Cdd:PRK10555 952 QKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLVRRR 1029
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
3-1032 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 759.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 3 SRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSSK 82
Cdd:NF033617 1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 83 SANdGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDL-LMVLNFYS---PNGEYDDqflinY 158
Cdd:NF033617 81 SSL-GYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYRKANSADTpIMYIGLTSeemPRGQLTD-----Y 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 159 VNLNIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRigaapyANPQEVQFNLVT 238
Cdd:NF033617 155 AERVLAPKLSQINGVGSVDVSGGQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGA------VRGDSVVSTVRA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 239 KGRLETADEFENVVLRANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTN 318
Cdd:NF033617 229 NDQLKTAEDYEDLVIKYADNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQET 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 319 FPEGVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLF 398
Cdd:NF033617 309 LPKNIKVNVLYDRTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLM 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 399 GLILAIGIVVDDAILVIENVDTTMAKDPtiSPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTIC 478
Cdd:NF033617 389 ALVLAIGLVVDDAIVVVENIHRHIEEGE--SPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLA 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 479 IAVVISSINALTLSPALCSLVLKQGGgNTARWYQAFNRGLESVTNKYGQIAGFLVK--KGVLLFTFFVVALAAVTYfaKT 556
Cdd:NF033617 467 GAVIISGIVALTLTPMMCSRLLKANE-KPGRFARAVDRFFDGLTARYGRGLKWVLKhrPLTLVVALATLALLPLLY--VF 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 557 TSTAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAfmtGASASNGASLFIKLHDWDMRN 636
Cdd:NF033617 544 IPKELAPSEDRGVIFGMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGVG---GNPGDNTGFGIINLKPWDERD 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 637 AldgqhSAQAISQRINGRAAtELPQAIVFAMGPPAVPGmGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQPEISHT 716
Cdd:NF033617 621 V-----SAQEIIDRLRPKLA-KVPGMDLFLFPLQDLPG-GAGSSLPQYQVTLTPSDYDSLFTWAEKLKEKLRKSPQFADV 693
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 717 FSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRFHVRSSNG 796
Cdd:NF033617 694 DSDLQDKGPELNVDIDRDKAARLGISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIYVRSNDG 773
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 797 EMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEVLPQGYQYEWTGMAYQEVLAGNQAIF 876
Cdd:NF033617 774 KLVPLSTLAKIEERAAPLSLNHFNQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEEGSSLLF 853
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 877 AFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKVEREE 956
Cdd:NF033617 854 LFLLALAAIYLVLAIQYESFVDPLTILSTVPLAGCGALLALALGGQSMNIYAQIGLITLIGLVKKNGILMVEFANELQRH 933
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84379819 957 KDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQR 1032
Cdd:NF033617 934 QGLSRREAIYQAAALRLRPILMTTLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLLAR 1009
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
6-1033 |
4.11e-177 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 544.43 E-value: 4.11e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 6 FIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSAN 85
Cdd:PRK09579 7 FIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 86 DGSYnLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSpnGEYDDQFLINYVNLNIKD 165
Cdd:PRK09579 87 NFSI-ISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYISFYS--EEMSNPQITDYLSRVIQP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 166 QLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAapyanpQEVQFNLVTKGRLETA 245
Cdd:PRK09579 164 KLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKG------EYVVTSINASTELKSA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 246 DEFENVVLRANQDgSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPEGVAY 325
Cdd:PRK09579 238 EAFAAIPVKTSGD-SRVLLGDVARVEMGAENYDSISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELESQLPPNLKV 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 326 EASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIG 405
Cdd:PRK09579 317 SIAYDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIG 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 406 IVVDDAILVIENVDTTMAKDPTisPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVVISS 485
Cdd:PRK09579 397 LVVDDAIVVVENIHRHIEEGKS--PFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISG 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 486 INALTLSPALCSLVLKQgGGNTARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTAFVPQE 565
Cdd:PRK09579 475 IVALTLSPMMCALLLRH-EENPSGLAHRLDRLFERLKQRYQRALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 566 DKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYafmTGASASNGASLfikLHDWDMRnaldgQHSAQ 645
Cdd:PRK09579 554 DQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQINGF---NGVQSGIGGFL---LKPWNER-----ERTQM 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 646 AISQRINGRaATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTlgRSRTDLAMVMNDVIAEANKQPEISHTFSTFRANVP 725
Cdd:PRK09579 623 ELLPLVQAK-LEEIPGLQIFGFNLPSLPGTGEGLPFQFVINTA--NDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKP 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 726 HYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRFHVRSSNGEMIPLSTLV 805
Cdd:PRK09579 700 EVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEINRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLI 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 806 TYDQIFEPDVAWRYNMYRSAVIQGQPApgYSSGDAIAAMERVAAEVLPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFI 885
Cdd:PRK09579 780 TLSDRARPRQLNQFQQLNSAIISGFPI--VSMGEAIETVQQIAREEAPEGFAFDYAGASRQYVQEGSALWVTFGLALAII 857
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 886 YLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKVEREEKDASIEDAA 965
Cdd:PRK09579 858 FLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAI 937
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84379819 966 VKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQRK 1033
Cdd:PRK09579 938 EEAAAIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAKP 1005
|
|
| CusA |
COG3696 |
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism]; |
1-1038 |
7.15e-147 |
|
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
Pssm-ID: 442911 [Multi-domain] Cd Length: 1031 Bit Score: 465.27 E-value: 7.15e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 1 MLSR---FFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMI 77
Cdd:COG3696 1 MLNRiirFSLRNRLLVLLLTLLLAAAGIYSLRRLPIDAFPDITNVQVQVITEAPGLSPEEVEQQVTYPIETALNGLPGVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 78 YMSSKSANDGSYnLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVR--------------MVGVTvkkrspdllmvlnf 143
Cdd:COG3696 81 EVRSISRFGLSV-VTVIFEDGTDIYWARQLVLERLQQVREQLPAGVTpelgpistglgeiyQYTLE-------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 144 ySPNGEYDDQFLINYVNLNIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIga 223
Cdd:COG3696 146 -SDPGKYSLMELRTLQDWVIRPQLRSVPGVAEVNSFGGFVKQYQVLVDPAKLRAYGLTLDDVIEALERNNANVGGGYI-- 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 224 apyaNPQEVQFNLVTKGRLETADEFENVVLrANQDGSTVYLKDIARVELGKKF------YDGNGkyrgqDASIVTLSLQS 297
Cdd:COG3696 223 ----ERGGQEYLVRGIGLIRSLEDIENIVV-KTRNGTPVLLRDVAEVRIGPAPrrgaatLNGEG-----EVVGGIVLMLK 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 298 DANALESGKAVMAMLDNLSTNFPEGVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVS 377
Cdd:COG3696 293 GENALEVIEAVKAKLAELKPSLPEGVKIVPFYDRSDLIDRAIHTVTKNLLEGALLVILVLFLFLGNLRAALIVALAIPLS 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 378 LIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATL----IAMKEVTGPIVTSTLVLL 453
Cdd:COG3696 373 LLFAFIVMRLFGISANLMSLGGLAIDFGIIVDGAVVMVENILRRLEENRAAGTPRERLevvlEAAREVRRPIFFATLIII 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 454 AVFIPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPALCSLVLKqggGNTARWYQAFNRGLESVtnkYGQIAGFLV 533
Cdd:COG3696 453 LVFLPIFTLEGVEGKLFRPMALTVIFALLGALLLSLTLVPVLASLLLR---GKVPEKENPLVRWLKRL---YRPLLRWAL 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 534 KKGVLLFTFFVVALAAVTYFAKTTSTAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVtlvngyAF 613
Cdd:COG3696 527 RHPKLVLAVALVLLVLALALFPRLGSEFLPELDEGDLLVMATLPPGISLEESVELGQQVERILKSFPEVESV------VS 600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 614 MTGASAS-------NGASLFIKLH---DWdmRNALDGQHSAQAISQRINGraatelpqaivfamgppaVPGMgaasGFEF 683
Cdd:COG3696 601 RTGRAEDatdpmgvNMSETFVILKprsEW--RSGRTKEELIAEMREALEQ------------------IPGV----NFNF 656
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 684 V------LEDTLGRSRTDLAM--------VMNDV---IAEANKQ-PEISHTFSTFRANVPHYYVDIDREKAQQLGIPLSE 745
Cdd:COG3696 657 SqpiqmrVDELLSGVRADVAVkifgddldVLRRLaeqIEAVLKTvPGAADVQVERVTGLPQLDIRIDRDAAARYGLNVAD 736
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 746 IFQTLQG-----NLGSLYVNDftmfgKNFRVTMQADSEHRSSMDDLQRFHVRSSNGEMIPLSTLVTYDQIFEPDVAWRYN 820
Cdd:COG3696 737 VQDVVETaiggkAVGQVYEGE-----RRFDIVVRLPEELRDDPEAIRNLPIPTPSGAQVPLSQVADIEVVEGPNQISREN 811
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 821 MYRSAVIQGQPApGYSSGDAIA-AMERVAAEV-LPQGYQYEWTGMAYQEVLAGN--QAIFAFALALIFIYLFMvaQYESW 896
Cdd:COG3696 812 GRRRIVVQANVR-GRDLGSFVAeAQAKVAEQVkLPPGYYIEWGGQFENLQRATArlAIVVPLALLLIFLLLYL--AFGSV 888
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 897 TIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKvEREEKDASIEDAAVKGGTLRFRAV 976
Cdd:COG3696 889 RDALLILLNVPFALIGGVLALWLRGMPLSVSAGVGFIALFGVAVLNGVVLVSYIN-QLRAEGLDLREAIIEGALERLRPV 967
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84379819 977 NMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQRKREKAH 1038
Cdd:COG3696 968 LMTALVAALGLLPMALSTGPGSEVQRPLATVVIGGLITSTLLTLLVLPALYLLFGRRRLRRA 1029
|
|
| PRK10614 |
PRK10614 |
multidrug efflux system subunit MdtC; Provisional |
6-1036 |
1.77e-128 |
|
multidrug efflux system subunit MdtC; Provisional
Pssm-ID: 182589 [Multi-domain] Cd Length: 1025 Bit Score: 416.05 E-value: 1.77e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 6 FIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETS---VNGVEDMIYMSSK 82
Cdd:PRK10614 7 FIYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSlgrIAGVNEMTSSSSL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 83 sandGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQevrmvGVTVKKR--------SPDLLMVL--NFYSPNGEYDd 152
Cdd:PRK10614 87 ----GSTRIILQFDFDRDINGAARDVQAAINAAQSLLPS-----GMPSRPTyrkanpsdAPIMILTLtsDTYSQGQLYD- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 153 qflinYVNLNIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIgaapyaNPQEV 232
Cdd:PRK10614 157 -----FASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRQAISNANVRRPQGAV------EDGTH 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 233 QFNLVTKGRLETADEFENVVLRANQdGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAML 312
Cdd:PRK10614 226 RWQIQTNDELKTAAEYQPLIIHYNN-GAAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDRIRAKL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 313 DNLSTNFPEGVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTI 392
Cdd:PRK10614 305 PELRETIPAAIDLQIAQDRSPTIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSL 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 393 NTVTLFGLILAIGIVVDDAILVIENVDTTMakDPTISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQ 472
Cdd:PRK10614 385 NNLSLMALTIATGFVVDDAIVVLENISRHL--EAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFRE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 473 FALTICIAVVISSINALTLSPALCSLVLKQGGGNTARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTY 552
Cdd:PRK10614 463 FAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQKRLRGFGRMLVALQQGYGRSLKWVLNHTRWVGVVLLGTIALNVW 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 553 FAKTTSTAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTlvnGYafmTGASASNGASLFIKLHDW 632
Cdd:PRK10614 543 LYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVT---GF---TGGSRVNSGMMFITLKPL 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 633 DMRNaldgqHSAQAISQRINGRAATElPQAIVFAMGPP--AVPGMGAASGFEF-VLEDTLGRSRTdlamvMNDVIAEA-N 708
Cdd:PRK10614 617 SERS-----ETAQQVIDRLRVKLAKE-PGANLFLMAVQdiRVGGRQSNASYQYtLLSDDLAALRE-----WEPKIRKAlA 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 709 KQPEISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQR 788
Cdd:PRK10614 686 ALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALEK 765
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 789 FHVRSSNGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEV-LPQGYQYEWTGMA--Y 865
Cdd:PRK10614 766 MFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIERAMTQLgVPSTVRGSFAGTAqvF 845
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 866 QEVLAGNQAIFAFALALIFIYLFMVaqYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAIL 945
Cdd:PRK10614 846 QETMNSQLILILAAIATVYIVLGIL--YESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIM 923
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 946 IVEFAKVEREEKDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPG 1025
Cdd:PRK10614 924 MVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPV 1003
|
1050
....*....|.
gi 84379819 1026 FYAFVQRKREK 1036
Cdd:PRK10614 1004 VYLFFDRLRLR 1014
|
|
| PRK10503 |
PRK10503 |
MdtB/MuxB family multidrug efflux RND transporter permease subunit; |
3-1032 |
3.59e-117 |
|
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
Pssm-ID: 182501 [Multi-domain] Cd Length: 1040 Bit Score: 386.01 E-value: 3.59e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 3 SRFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSSK 82
Cdd:PRK10503 13 SRLFILRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 83 SANdGSYNLNVTFDVGTDADMAQVNVQNRVAQIESKLPQEVRMVGVTVKKRSPD----LLMVLNFYSPNGEYDDQfliny 158
Cdd:PRK10503 93 SSG-GASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADppimTLAVTSTAMPMTQVEDM----- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 159 VNLNIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAAPYAnpqevqFNLVT 238
Cdd:PRK10503 167 VETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRA------VTLSA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 239 KGRLETADEFENVVLrANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTN 318
Cdd:PRK10503 241 NDQMQSAEEYRQLII-AYQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIATADSIRQMLPQLTES 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 319 FPEGVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLF 398
Cdd:PRK10503 320 LPKSVKVTVLSDRTTNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 399 GLILAIGIVVDDAILVIENVDTTMAKDPtiSPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTIC 478
Cdd:PRK10503 400 ALTIATGFVVDDAIVVIENISRYIEKGE--KPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLA 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 479 IAVVISSINALTLSPALCSLVLKQGG-GNTARWYQAFNRGLESVTNKYGQIAGFLVKK-----GVLLFTFFVVALAAVty 552
Cdd:PRK10503 478 VAILISAVVSLTLTPMMCARMLSQESlRKQNRFSRASERMFDRVIAAYGRGLAKVLNHpwltlSVALSTLLLTVLLWI-- 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 553 fakTTSTAFVPQEDKGILLVNVQLPDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGyafMTGASAS-NGASLFIKLHD 631
Cdd:PRK10503 556 ---FIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG---VDGTNPSlNSARLQINLKP 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 632 WDMRNaldgqHSAQAISQRINGRAATeLPQAIVF--AMGPPAVPGMGAASGFEFVLEDTlgrSRTDLAMVMNDVIAEANK 709
Cdd:PRK10503 630 LDERD-----DRVQKVIARLQTAVAK-VPGVDLYlqPTQDLTIDTQVSRTQYQFTLQAT---SLDALSTWVPKLMEKLQQ 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 710 QPEISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRVTMQADSEHRSSMDDLQRF 789
Cdd:PRK10503 701 LPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTI 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 790 HVRSSNGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQPAPGYSSGDAIAAMERVAAEV-LPQGY--QYEWTGMAYQ 866
Cdd:PRK10503 781 RLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAIMDTEKTLnLPADIttQFQGSTLAFQ 860
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 867 EVLAGnqAIFAFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILI 946
Cdd:PRK10503 861 SALGS--TVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMM 938
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 947 VEFAKVEREEKDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGF 1026
Cdd:PRK10503 939 IDFALAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVI 1018
|
....*.
gi 84379819 1027 YAFVQR 1032
Cdd:PRK10503 1019 YLLFDR 1024
|
|
| 2A0601 |
TIGR00914 |
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ... |
4-1037 |
1.34e-87 |
|
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 129992 [Multi-domain] Cd Length: 1051 Bit Score: 304.76 E-value: 1.34e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 4 RFFIQRPKFALVISIILTLAGAISLAILPVAEYPKISPPSVSVSAFYTGASAEVVEQAIADPIETSVNGVEDMIYMSSKS 83
Cdd:TIGR00914 7 SFSVAQRWLVLLATLVMAILGIWSYNRLPIDAVPDITNVQVQINTSAPGYSPLEVEQRVTYPIETAMAGLPGLETTRSLS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 84 ANDGSYnLNVTFDVGTDADMAQVNVQNRVAQIESKLPQ--------------EVRMVGVTVKKRSPdllmvlnfYSPNGE 149
Cdd:TIGR00914 87 RYGLSQ-VTVIFKDGTDLYFARQLVNERLQQARDNLPEgvspemgpistglgEIFLYTVEAEEGAR--------KKDGGA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 150 YDDQFLINYVNLNIKDQLARVSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAApyanp 229
Cdd:TIGR00914 158 YTLTDLRTIQDWIIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGAGYIERR----- 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 230 qEVQFNLVTKGRLETADEFENVVLrANQDGSTVYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVM 309
Cdd:TIGR00914 233 -GEQYLVRAPGQVQSMDDIRNIVI-ATGEGVPIRIRDVARVQIGKELRTGAATENGKEVVLGTVFMLIGENSRTVAQAVG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 310 AMLDNLSTNFPEGVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTG 389
Cdd:TIGR00914 311 DKLETINKTLPEGVEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQG 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 390 FTINTVTLFGliLAIGIVVDDAILVIENVDTTMAKDPTISPRKATLI--------AMKEVTGPIVTSTLVLLAVFIPVAM 461
Cdd:TIGR00914 391 ISANLMSLGA--LDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKerlhevfaASREVRRPLIFGQLIITLVFLPIFT 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 462 LPGITGIMYRQFALTICIAVVISSINALTLSPALCSLVLKQGGGNTARWYQAF-NRGLESVTNKygqiaGFLVKKGVLLF 540
Cdd:TIGR00914 469 LTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVlKRRYEPLLER-----VLAWPAVVLGA 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 541 TFFVVALAAVTYFakTTSTAFVPQEDKG-ILLVNVQLPdaaSLSRTEDVTEQLL--EMVEQEPGVDGVTLVNGYAFMTGA 617
Cdd:TIGR00914 544 AAVSIVLVVWIAS--RVGGEFIPSLNEGdLAYQALRIP---GTSLAQSVAMQQTleKLIKSFPEVARVFAKTGTAEIATD 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 618 SAS-NGASLFIKLH---DWDmrnalDGQHSAQAISQRINGRAAtELPqAIVFAMGPPavpgmgaasgFEFVLEDTLGRSR 693
Cdd:TIGR00914 619 PMPpNASDTYIILKpesQWP-----EGKKTKEDLIEEIQEATV-RIP-GNNYEFTQP----------IQMRFNELISGVR 681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 694 TDLAM-----VMNDVIAEANK-------QPEISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVND 761
Cdd:TIGR00914 682 SDVAVkvfgdDLDDLDATAEKisavlkgVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATAVGGRMSGE 761
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 762 FTMFGKNFRVTMQADSEHRSSMDDLQRFHVR--SSNGEM---IPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQpAPGYS 836
Cdd:TIGR00914 762 TFEGDRRFDIVIRLPESLRESPQALRQLPIPlpLSEDARkqfIPLSDVADLRVSPGPNQISRENGKRRVVVSAN-VRGRD 840
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 837 SGDAIA-AMERVAAEV-LPQGYQYEWTGMaYQEVLAGN---QAIFAFALALIFIYLFMVaqYESWTIPIAIILVVPVATL 911
Cdd:TIGR00914 841 LGSFVDdAKKAIAEQVkLPPGYWITWGGQ-FEQLQSATkrlQIVVPVTLLLIFVLLYAA--FGNVKDALLVFTGIPFALT 917
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 912 GSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAKVEREEKdASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLI 991
Cdd:TIGR00914 918 GGVFALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEG-PSLDEAVYEGALTRVRPVLMTALVASLGFVPMA 996
|
1050 1060 1070 1080
....*....|....*....|....*....|....*....|....*.
gi 84379819 992 FAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAFVQRKREKA 1037
Cdd:TIGR00914 997 IATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYRLVHRRRHKG 1042
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
252-1037 |
6.11e-20 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 95.70 E-value: 6.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 252 VLRANQDGSTVYLKDIARVELGKKFYDGNgkYRGQDAS----IVTLSLQSDANALESGKAVMAMLDNLSTNFPEGVAYEA 327
Cdd:COG1033 125 LIPDELPASPEELAELREKVLSSPLYVGR--LVSPDGKatliVVTLDPDPLSSDLDRKEVVAEIRAIIAKYEDPGVEVYL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 328 SYDTtVFVAESIKGVVKTLIE----AILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTIN--TVTLFGLI 401
Cdd:COG1033 203 TGFP-VLRGDIAEAIQSDLAIffplALLLILLLLFLFFRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSplTILVPPLL 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 402 LAIGIvvDDAILVIENVDTTMAKdpTISPRKATLIAMKEVTGPIVTSTLVLLAVFIpvAMLpgITGI-MYRQFALTICIA 480
Cdd:COG1033 282 LAIGI--DYGIHLLNRYREERRK--GLDKREALREALRKLGPPVLLTSLTTAIGFL--SLL--FSDIpPIRDFGIVAAIG 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 481 VVISSINALTLSPALCSLVLKqgggntARWYQAFNRGLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYfakttsta 560
Cdd:COG1033 354 VLLAFLTSLTLLPALLSLLPR------PKPKTRRLKKPPELGRLLAKLARFVLRRPKVILVVALVLAVVSLY-------- 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 561 fvpqedkGILLVNVqlpdaaslsrtedvteqllemveqepgvdgvtlvngyafmtgasasngaslfiklhDWDMRNALDG 640
Cdd:COG1033 420 -------GISRLKV--------------------------------------------------------EYDFEDYLPE 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 641 QHSAQAISQRINGRaatelpqaivfamgppavpgMGAASGFEFVLEDTLGRSRTDLAMV--MNDVIAEANKQPEISHTFS 718
Cdd:COG1033 437 DSPIRQDLDFIEEN--------------------FGGSDPLEVVVDTGEPDGLKDPEVLkeIDRLQDYLESLPEVGKVLS 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 719 tfranvphyYVDIdrekaqqlgipLSEIFQTLQGNLGSLYVndftmFGKNFRVTMQADSEHRSSMDDLqrfhvrssngem 798
Cdd:COG1033 497 ---------LADL-----------VKELNQALNEGDPKYYA-----LPESRELLAQLLLLLSSPPGDD------------ 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 799 ipLSTLVTYDqifepdvawrynmYRSAVIQGQPAPgYSSGDAIAAMERVAAEV----LPQGYQYEWTGMAY-----QEVL 869
Cdd:COG1033 540 --LSRFVDED-------------YSAARVTVRLKD-LDSEEIKALVEEVRAFLaenfPPDGVEVTLTGSAVlfaaiNESV 603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 870 AGNQaIFAFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEF 949
Cdd:COG1033 604 IESQ-IRSLLLALLLIFLLLLLAFRSLRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSR 682
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 950 AKVEReEKDASIEDAAVKggTLRF--RAVNMTSWSFILGIFPLIFAAgagHVSQNSLGISLIGGLLCVLLAGTFLIPGFY 1027
Cdd:COG1033 683 YREER-RKGGDLEEAIRR--ALRTtgKAILFTSLTLAAGFGVLLFSS---FPPLADFGLLLALGLLVALLAALLLLPALL 756
|
810
....*....|
gi 84379819 1028 AFVQRKREKA 1037
Cdd:COG1033 757 LLLDPRIAKK 766
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
822-1039 |
4.33e-09 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 60.64 E-value: 4.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 822 YRSAVIQGQPAPGYSSGD-----AIAAMERVAAEVLPQGYQYEWTGMAY-----QEVLAGNQAIFaFALALIFIYLFMVA 891
Cdd:COG1033 159 GKATLIVVTLDPDPLSSDldrkeVVAEIRAIIAKYEDPGVEVYLTGFPVlrgdiAEAIQSDLAIF-FPLALLLILLLLFL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 892 QYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAI-LIVEFakveREE--KDASIEDAAVKg 968
Cdd:COG1033 238 FFRSLRGVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIhLLNRY----REErrKGLDKREALRE- 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84379819 969 gTLR--FRAVNMTSWSFILGIFPLIFAA-GAGHvsqnSLGISLIGGLLCVLLAGTFLIPGFYAFVQRKREKAHG 1039
Cdd:COG1033 313 -ALRklGPPVLLTSLTTAIGFLSLLFSDiPPIR----DFGIVAAIGVLLAFLTSLTLLPALLSLLPRPKPKTRR 381
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
288-608 |
5.93e-09 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 60.16 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 288 ASIVTLSLQSDANAlESGKAVMAMLDNLSTNFPEGVAYEASYDTTV---FVAESIKGVVKTLIEAILLVIAVTYLFLGSA 364
Cdd:COG2409 115 AALVTVTLDGDAGD-EAAEAVDALRDAVAAAPAPGLTVYVTGPAALaadLNEAFEEDLGRAELITLPVALVVLLLVFRSL 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 365 RATLIPVVAIPVSLIGTFAV-------MQMTGFTINTVTLFGLilaiGIVVDDAILVI----ENVDTTMakdptiSPRKA 433
Cdd:COG2409 194 VAALLPLLTAGLAVGVALGLlallaafTDVSSFAPNLLTMLGL----GVGIDYALFLVsryrEELRAGE------DREEA 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 434 TLIAMKEVTGPIVTSTLvllAVFIPVAMLpGITGI-MYRQFALTICIAVVISSINALTLSPALCSLVlkqgGGNTARWYQ 512
Cdd:COG2409 264 VARAVATAGRAVLFSGL---TVAIALLGL-LLAGLpFLRSMGPAAAIGVAVAVLAALTLLPALLALL----GRRVFWPRR 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 513 AFNRGLESVTNKYGQ-IAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTAFV----------------------PQEDKGI 569
Cdd:COG2409 336 PRRRRAAAPESGFWRrLARAVVRRPVPVLVAAVAVLLALALPALGLRLGLPdadslpadspsrqgydalaehfPPGSNGP 415
|
330 340 350
....*....|....*....|....*....|....*....
gi 84379819 570 LLVNVQLPDAASLSRTEDVtEQLLEMVEQEPGVDGVTLV 608
Cdd:COG2409 416 LTVVVESDDDLDPADLAAL-DALAAALAAVPGVASVQPP 453
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
336-489 |
5.49e-08 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 54.18 E-value: 5.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 336 AESIKGVVKTLIEAILLVIAvtYLFLGSARATLIPVVAIPVS-LIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAILV 414
Cdd:TIGR00916 43 GELIKAGIIALLIGLVLVLL--YMLLRYEWRGAIAAIAALVHdVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVI 120
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 84379819 415 IENVDTTMAKDPTISPRKATLIAMKEVTGPIVTSTLVllaVFIPVAMLPGITGIMYRQFALTICIAVVISSINAL 489
Cdd:TIGR00916 121 FDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVT---TLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
317-499 |
5.64e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 53.69 E-value: 5.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 317 TNFPEGVAYEASYDTTV---FVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTIN 393
Cdd:TIGR00921 167 TNPPSGKFLDVTGSPAInydIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLY 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 394 TVTLFGLILAIGIVVDDAILVIENVDTTMAKDPTISprKATLIAMKEvTGPIV-----TSTLVLLAVFIPVamLPgitgi 468
Cdd:TIGR00921 247 ATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKG--EAIVTAVRR-TGRAVliallTTSAGFAALALSE--FP----- 316
|
170 180 190
....*....|....*....|....*....|.
gi 84379819 469 MYRQFALTICIAVVISSINALTLSPALCSLV 499
Cdd:TIGR00921 317 MVSEFGLGLVAGLITAYLLTLLVLPALLQSI 347
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
336-495 |
1.48e-05 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 48.44 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 336 AESIKGVVKTLIEAILLVIAVTYLFLGSAraTLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAILVI 415
Cdd:TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYRLF--GLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIY 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 416 ENVDTTMAKDptISPRKATLIAMKEVTGPIVTSTLV-LLAVFIPVAMLPG-ITGimyrqFALTICIAVVISSINALTLSP 493
Cdd:TIGR01129 322 ERIKEELRLG--KSVRQAIEAGFERAFSTIFDANITtLIAALILYVFGTGpVKG-----FAVTLAIGIIASLFTALVFTR 394
|
..
gi 84379819 494 AL 495
Cdd:TIGR01129 395 LL 396
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
336-492 |
2.68e-05 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 48.18 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 336 AESIK-GVVKTLIEAILLVIA--VTYLFLGsaratLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAI 412
Cdd:PRK14726 368 ADSIAaGLVAGLIAAILVAALmiGFYGFLG-----VIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNV 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 413 LVIENVDTTMAKdpTISPRKATLIAMKEVTGPIVTSTlvlLAVFIPVAMLPGITGIMYRQFALTICIAVVISSINALTLS 492
Cdd:PRK14726 443 LIYERIREEEKT--GHSLIQALDRGFSRALATIVDAN---VTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLT 517
|
|
| Patched |
pfam02460 |
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic ... |
343-499 |
6.67e-05 |
|
Patched family; The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals.
Pssm-ID: 308203 [Multi-domain] Cd Length: 793 Bit Score: 46.96 E-value: 6.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 343 VKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAILVIENVDTTM 422
Cdd:pfam02460 642 IQNIVITLICMFIVCFLFIPNPPCVFVITLAIASIDIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHIAYHFVRSR 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 423 AKDptisPRKATLIAMKEVTGPIV---TSTL--VLLAVFIPVAMLpgitgimyRQFALTICIAVVISSINALTLSPALCS 497
Cdd:pfam02460 722 GDT----PAERVVDALEALGWPVFqggLSTIlgVLVLLFVPSYMV--------VVFFKTVFLVVAIGLLHGLFILPIILS 789
|
..
gi 84379819 498 LV 499
Cdd:pfam02460 790 LF 791
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
288-498 |
7.99e-05 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 46.89 E-value: 7.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 288 ASIVTLSLQSDAN---ALESGKAVMAMLDNlsTNFPEGVAYEASYD--TTVFVAESI-KGVVKTLIEAILLVIAVTYLFL 361
Cdd:TIGR00833 117 ATIIIVNLAGEKGqkeAQEAINAVRRIVEQ--TNAPDGLTVHVTGPlaTIADILESGdKDMNRITATTGIIVLIILLLVY 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 362 GSARATLIPVVAIPVSLI---GTFAVMQMTGF-TINTVTLFGLI-LAIGIVVDDAILVIENVDTTMAKDptISPRKATLI 436
Cdd:TIGR00833 195 RSPITMLVPLVSVGFSVVvaqGIVSLLGIPGLiGVNAQTTVLLTaLVIGAGTDYAVFLTGRYHEERRKG--ESLEEAAAE 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84379819 437 AMKEVTGPIVTSTLVLLAVF--IPVAMLPgitgiMYRQFALTICIAVVISSINALTLSPALCSL 498
Cdd:TIGR00833 273 ALRGTGKAILGSALTVAVAFlaLSLARLP-----SFKTLGVSCAVGVLVALLNAVTLTPALLTL 331
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
319-498 |
3.51e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 44.44 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 319 FPEGVAYEA---SYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTG--FTIN 393
Cdd:TIGR00921 543 PPPGVKVGVtglPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGipSFLA 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 394 TVTLFGLILAIGIvvDDAILVIENVDTTMAKdptISPRKATLIAMkEVTGP-IVTSTLVLLAVFIpvAMLPGITGIMyRQ 472
Cdd:TIGR00921 623 MATTISIILGLGM--DYSIHLAERYFEERKE---HGPKEAITHTM-ERTGPgILFSGLTTAGGFL--SLLLSHFPIM-RN 693
|
170 180
....*....|....*....|....*.
gi 84379819 473 FALTICIAVVISSINALTLSPALCSL 498
Cdd:TIGR00921 694 FGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
853-1044 |
4.06e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 44.44 E-value: 4.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 853 PQGYQYEWTG---MAYQ-EVLAGNQAIFAFALALIFIYLFMVAQYESWT---IPIAIILVVPVATLGsflALNLTGTPLN 925
Cdd:TIGR00921 170 PSGKFLDVTGspaINYDiEREFGKDMGTTMAISGILVVLVLLLDFKRWWrplLPLVIILFGVAWVLG---IMGWLGIPLY 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 926 LYAQIGLVLLIALAAKNAILIVEFAKVEREEKDASiEDAAVKGGTLRFRAVNMTSWSFILGiFPLIFAAGAGHVSQNSLG 1005
Cdd:TIGR00921 247 ATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAK-GEAIVTAVRRTGRAVLIALLTTSAG-FAALALSEFPMVSEFGLG 324
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 84379819 1006 IsLIGGLLCVLLAGTFL------IPGFYAFVQRKREKAHGGTTKL 1044
Cdd:TIGR00921 325 L-VAGLITAYLLTLLVLpallqsIDIGREKVKKEIIAIGGKSSEI 368
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
336-501 |
4.52e-04 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 43.95 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 336 AESIKGVVKTLIEAILLVIAVTYLFLGSARatLIPVVAIPVSLIGTFAVMQMTGFTIntvTL---FGLILAIGIVVDDAI 412
Cdd:COG0342 267 ADSIEKGLIAGLIGLLLVALFMLLYYRLPG--LVANIALALNVVLLLGVLSLLGATL---TLpgiAGIILTIGMAVDANV 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 413 LVIENVDTTMAKDptISPRKATLIAMKEVTGPIVTSTLVLLAVFIPVAMLpGITGImyRQFALTICIAVVISSINALTLS 492
Cdd:COG0342 342 LIFERIREELRAG--RSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVL-GTGPV--KGFAVTLILGILISMFTAVPVT 416
|
....*....
gi 84379819 493 PALCSLVLK 501
Cdd:COG0342 417 RPLLNLLLG 425
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
288-510 |
4.99e-04 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 43.43 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 288 ASIVTLSLQSDAN---ALESGKAVMAMLDNLSTnfPEGVAYEASYDTTVFV--AESIKGVVKTLIEAILLVIAVTYLFL- 361
Cdd:pfam03176 86 AAYVVVTLEGDPGtteADESVAAVRDAVEQAPP--PEGLKAYLTGPAATVAdlRDAGDRDLGLIEAVTLVVIFIILLIVy 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 362 GSARATLIPVVAIPVSLIGTFAVMQMT----GFTINTVTL-FGLILAIGIVVDDAILVIENVDTTMAKDPTispRKATLI 436
Cdd:pfam03176 164 RSVVAALLPLLTVGLSLGAAQGLVAILahilGIGLSTFALnLLVVLLIAVGTDYALFLVSRYREELRAGED---REEAVI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 437 AMKEVTGPIVT-STLVLLAVFIP--VAMLPgitgiMYRQFALTICIAVVISSINALTLSPALCSLV-----LKQGGGNTA 508
Cdd:pfam03176 241 RAVRGTGKVVTaAGLTVAIAMLAlsFARLP-----VFAQVGPTIAIGVLVDVLAALTLLPALLALLgrwglWPPKRDRTA 315
|
..
gi 84379819 509 RW 510
Cdd:pfam03176 316 RW 317
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
336-555 |
5.35e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 44.07 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 336 AESIKGVVKTLIEAILLV---IAVTYLFLGsaratLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAI 412
Cdd:PRK13024 262 QDAIDAGIIAGIIGFALIflfMLVYYGLPG-----LIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANV 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 413 LVIENVDTTMAKDPTIspRKATLIAMKEVTGPI----VTSTLVLLAVFI----PVamlpgitgimyRQFALTICIAVVIS 484
Cdd:PRK13024 337 LIFERIKEELRKGKSL--KKAFKKGFKNAFSTIldsnITTLIAAAILFFfgtgPV-----------KGFATTLIIGILAS 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 84379819 485 SINALTLSPALCSLVLKQGGGNTARWYQAFNR--GLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAK 555
Cdd:PRK13024 404 LFTAVFLTRLLLELLVKRGDKKPFLFGVKKKKihNINEGVTIFDRIDFVKKRKWFLIFSIVLVIAGIIIFFIF 476
|
|
| 2A060602 |
TIGR00918 |
The Eukaryotic (Putative) Sterol Transporter (EST) Family; |
346-499 |
1.56e-03 |
|
The Eukaryotic (Putative) Sterol Transporter (EST) Family;
Pssm-ID: 273338 [Multi-domain] Cd Length: 1145 Bit Score: 42.56 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 346 LIEAILLVIA--VTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAILVIENVDTTMA 423
Cdd:TIGR00918 969 LSISVVLACTflVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIPVVILIASVGIGVEFTVHIALGFLTAIG 1048
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 84379819 424 kdptiSPRKATLIAMKEVTGPIVTSTL-VLLAVFipvaMLPGIT-GIMYRQFALTICIAVVISSINALTLSPALCSLV 499
Cdd:TIGR00918 1049 -----DRNRRAVLALEHMFAPVLDGALsTLLGVL----MLAGSEfDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMF 1117
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
281-412 |
1.77e-03 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 42.53 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 281 GKYRGQDASIVTLSLQSDANALEsgkavmAMLDNLstnfpEGVAY---EASYDTtvfVAESIKGVVKTLIEAILLVIAVT 357
Cdd:COG4258 590 GRKDGQWAALVPLRGVDDAAALR------AAAAGL-----PGVRLvdrKAESSS---LFGRYRNDALWLLLLALLLILLL 655
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 84379819 358 YLF-LGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVTLFGLILAIGIVVDDAI 412
Cdd:COG4258 656 LLLrLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYAL 711
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
872-1036 |
2.72e-03 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 41.76 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 872 NQAIFAFALALIFIYLFMVAQYESWTIPIAIILVVPVA-TLGSFLALNLTGTPLNLyaqIGLVLLIALAAKNAILIVEFA 950
Cdd:PRK13024 266 DAGIIAGIIGFALIFLFMLVYYGLPGLIANIALLLYIFlTLGALSSLGAVLTLPGI---AGLVLGIGMAVDANVLIFERI 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 951 KvEREEKDASIEDAAVKGGTLRFRAV---NMTswSFILGIfpLIFAAGAGHVsqNSLGISLIGGLLCVLLAGTFLIPGFY 1027
Cdd:PRK13024 343 K-EELRKGKSLKKAFKKGFKNAFSTIldsNIT--TLIAAA--ILFFFGTGPV--KGFATTLIIGILASLFTAVFLTRLLL 415
|
....*....
gi 84379819 1028 AFVQRKREK 1036
Cdd:PRK13024 416 ELLVKRGDK 424
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
872-1025 |
4.07e-03 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 40.99 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 872 NQAIFAFALALIFIYLFMVAQYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEfak 951
Cdd:COG4258 639 NDALWLLLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLFHLIALLLVLGIGIDYALFFTE--- 715
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84379819 952 vereekdasiedAAVKGGTLR--FRAVNMTSWSFILGIFPLIFAAgagHVSQNSLGISLIGGLLCVLLAGTFLIPG 1025
Cdd:COG4258 716 ------------GLLDKGELArtLLSILLAALTTLLGFGLLAFSS---TPALRSFGLTVLLGILLALLLAPLLAPR 776
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
287-483 |
5.41e-03 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 40.90 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 287 DASIVTLSLQSDANALESGKAVMAMLDnlstnfpegVAYEASYDTTVFVA-------ESIKGVVKTLIEAILLVIAVTYL 359
Cdd:COG2409 462 DAARLQVVPDGDPDSPEAIDLVDRLRD---------AAAPALEGAEVLVGgttavniDISDALADDLPLVIPVVLGLIFL 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 360 FLGSA-RATLIPVVAIP---VSLIGTFAVM--------QMTGFTINTVTLFGLILAIGIVV----DDAILVI----ENVD 419
Cdd:COG2409 533 LLLLLfRSVVAPLKAVLtnlLSLGAALGVLvlvfqhgwLLLGFTPGPLDSFVPLLLFVILFglgmDYEVFLVsrirEEYD 612
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 84379819 420 TTMakdptiSPRKATLIAMkEVTGPIVTST-LVLLAVFipVAMLP-GITGImyRQFALTICIAVVI 483
Cdd:COG2409 613 RGG------GTREAVIRGL-ARTGRVITSAaLIMAAVF--AAFATsPLVFL--KQIGFGLAVGVLL 667
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
336-495 |
7.90e-03 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 39.82 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 336 AESIKGVVKTLIEAILLVIA---VTYLFLGsaratLIPVVAIPVSLIGTFAVMQMTGFTIntvTL---FGLILAIGIVVD 409
Cdd:PRK05812 293 ADSIRAGLIAGLIGLALVLLfmiLYYRLFG-----LIANIALVANLVLILAVLSLLGATL---TLpgiAGIVLTIGMAVD 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84379819 410 DAILVIENVdttmaKDpTI----SPRKATLIAMKEVTGPIVTSTLV-LLAVFI-------PVamlpgitgimyRQFALTI 477
Cdd:PRK05812 365 ANVLIFERI-----RE-ELregrSLRSAIEAGFKRAFSTILDSNITtLIAAIIlyalgtgPV-----------KGFAVTL 427
|
170
....*....|....*...
gi 84379819 478 CIAVVISSINALTLSPAL 495
Cdd:PRK05812 428 GIGILTSMFTAITVTRAL 445
|
|
| |
