|
Name |
Accession |
Description |
Interval |
E-value |
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
2-254 |
6.87e-175 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 481.61 E-value: 6.87e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHH-R 80
Cdd:COG4598 3 DTAPPALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDGeL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPADPKQVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:COG4598 83 VPADRRQLQRIRTRLGMVFQSFNLWSHMTVLENVIEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:COG4598 163 AAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVF 242
|
250
....*....|....
gi 114544175 241 GAPKSERLRGFLKS 254
Cdd:COG4598 243 GNPKSERLRQFLSS 256
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
7-253 |
2.75e-149 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 415.93 E-value: 2.75e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrPADPK 86
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL----------TDSKK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:COG1126 71 DINKLRRKVGMVFQQFNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSE 246
Cdd:COG1126 151 LAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHE 230
|
....*..
gi 114544175 247 RLRGFLK 253
Cdd:COG1126 231 RTRAFLS 237
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
8-230 |
6.34e-119 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 338.35 E-value: 6.34e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrPADPKQ 87
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL----------TDDKKN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
8-253 |
1.15e-104 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 304.20 E-value: 1.15e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPV-VWKGESHHRRPADPK 86
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInLVRDKDGQLKVADKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKC-DVYPAQLSGGQQQRAAIAR 165
Cdd:PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
....*...
gi 114544175 246 ERLRGFLK 253
Cdd:PRK10619 246 PRLQQFLK 253
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
7-253 |
5.08e-97 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 283.91 E-value: 5.08e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpADPK 86
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-----------NDPK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLR-IRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:PRK09493 70 VDERlIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIAR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229
|
....*...
gi 114544175 246 ERLRGFLK 253
Cdd:PRK09493 230 QRLQEFLQ 237
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
8-252 |
4.05e-89 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 264.30 E-value: 4.05e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILfkgepvVWKGESHHRRPADPKQ 87
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR------VGDITIDTARSLSQQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VL--RIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:PRK11264 78 GLirQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQ 237
|
....*..
gi 114544175 246 ERLRGFL 252
Cdd:PRK11264 238 PRTRQFL 244
|
|
| ectoine_ehuA |
TIGR03005 |
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ... |
8-254 |
4.62e-87 |
|
ectoine/hydroxyectoine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Pssm-ID: 132050 [Multi-domain] Cd Length: 252 Bit Score: 258.99 E-value: 4.62e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVV-WKGESHHRRPADPK 86
Cdd:TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYhMPGRNGPLVPADEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDlTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKE 240
|
....*....
gi 114544175 246 ERLRGFLKS 254
Cdd:TIGR03005 241 ERTREFLSK 249
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
8-253 |
4.03e-86 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 256.48 E-value: 4.03e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgesHH---RRPAD 84
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG---------NHfdfSKTPS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKQVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIA 164
Cdd:PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 165 RALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGpPETLFGAPK 244
Cdd:PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG-DASCFTQPQ 232
|
....*....
gi 114544175 245 SERLRGFLK 253
Cdd:PRK11124 233 TEAFKNYLS 241
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
8-253 |
3.99e-85 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 253.78 E-value: 3.99e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvvwkgESHHRRPADPKQ 87
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGH------QFDFSQKPSEKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:COG4161 77 IRLLRQKVGMVFQQYNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPEtLFGAPKSER 247
Cdd:COG4161 157 MMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS-HFTQPQTEA 235
|
....*.
gi 114544175 248 LRGFLK 253
Cdd:COG4161 236 FAHYLS 241
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
5-233 |
2.50e-76 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 230.70 E-value: 2.50e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSHhr 80
Cdd:COG1136 2 SPLLELRNLTKSYGTgegeVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDI-----SS-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpADPKQVLRIR-TNLSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQ 159
Cdd:COG1136 75 --LSERELARLRrRHIGFVFQFFNLLPELTALENVA-LPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAhDVSDHVVFLHQGLIEEQ 233
Cdd:COG1136 152 RVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVTHDPELA-ARADRVIRLRDGRIVSD 225
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
4-252 |
3.23e-76 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 231.02 E-value: 3.23e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrPA 83
Cdd:COG1127 2 SEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDIT---------GL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLRIRTNLSMVFQQFNLWAHMTILQNVMeAPV---TVLARDRgsVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:COG1127 73 SEKELYELRRRIGMLFQGGALFDSLTVFENVA-FPLrehTDLSEAE--IRELVLEKLELVGLPGAADKMPSELSGGMRKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:COG1127 150 VALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
250
....*....|...
gi 114544175 240 FgAPKSERLRGFL 252
Cdd:COG1127 230 L-ASDDPWVRQFL 241
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
8-257 |
1.23e-75 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 233.05 E-value: 1.23e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrPA 83
Cdd:COG1135 2 IELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLT---------AL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLRIRTNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:COG1135 73 SERELRAARRKIGMIFQHFNLLSSRTVAENV-ALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGA 242
Cdd:COG1135 152 ARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFAN 231
|
250
....*....|....*
gi 114544175 243 PKSERLRGFLKSTTH 257
Cdd:COG1135 232 PQSELTRRFLPTVLN 246
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
8-230 |
2.33e-73 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 223.14 E-value: 2.33e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHRRPA 83
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI--SKLSEKELAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkqvLRiRTNLSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:cd03255 79 -----FR-RRHIGFVFQSFNLLPDLTALENVE-LPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDvSDHVVFLHQGLI 230
Cdd:cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
7-252 |
7.33e-73 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 222.94 E-value: 7.33e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLED-----SQQGEILFKGEPVVwkgeshhrr 81
Cdd:TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDlvpgvRIEGKVLFDGQDIY--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 paDPK-QVLRIRTNLSMVFQQFNLWAhMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGI----GDKCDVYPAQLSGG 156
Cdd:TIGR00972 72 --DKKiDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALwdevKDRLHDSALGLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-KKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPT 227
|
250
....*....|....*.
gi 114544175 237 ETLFGAPKSERLRGFL 252
Cdd:TIGR00972 228 EQIFTNPKEKRTEDYI 243
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-246 |
1.47e-70 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 225.17 E-value: 1.47e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAY-----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkge 76
Cdd:COG1123 255 AAAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDL----- 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 77 shhrRPADPKQVLRIRTNLSMVFQ----QFNlwAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKC-DVYPA 151
Cdd:COG1123 330 ----TKLSRRSLRELRRRVQMVFQdpysSLN--PRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDLaDRYPH 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:COG1123 404 ELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRI 483
|
250
....*....|....*.
gi 114544175 231 EEQGPPETLFGAPKSE 246
Cdd:COG1123 484 VEDGPTEEVFANPQHP 499
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
7-244 |
1.64e-70 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 216.29 E-value: 1.64e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGEshhrrp 82
Cdd:cd03258 1 MIELKNVSKVFGDtggkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSG------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpKQVLRIRTNLSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:cd03258 75 ---KELRKARRRIGMIFQHFNLLSSRTVFENVA-LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFG 241
Cdd:cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
...
gi 114544175 242 APK 244
Cdd:cd03258 231 NPQ 233
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
4-246 |
1.48e-69 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 217.66 E-value: 1.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSH---HR 80
Cdd:COG3842 2 AMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDV-----TGlppEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RpadpkqvlrirtNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:COG3842 77 R------------NVGMVFQDYALFPHLTVAENV-AFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:COG3842 144 VALARALAPEPRVLLLDEPLSALDAklreEMREELRRLQREL---GITFIYVTHDQEEALALADRIAVMNDGRIEQVGTP 220
|
250
....*....|
gi 114544175 237 ETLFGAPKSE 246
Cdd:COG3842 221 EEIYERPATR 230
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-251 |
1.58e-69 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 213.90 E-value: 1.58e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADPKQ 87
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI---------SGLSEAE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPkSE 246
Cdd:cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD-DP 230
|
....*
gi 114544175 247 RLRGF 251
Cdd:cd03261 231 LVRQF 235
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
6-239 |
1.04e-67 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 209.53 E-value: 1.04e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvWKgeshhrrpAD 84
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDV-TA--------LR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKQVLRIRTNLSMVFQQFNLWAHMTILQNV-------MEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQ 157
Cdd:COG3638 72 GRALRRLRRRIGMIFQQFNLVPRLSVLTNVlagrlgrTSTWRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:COG3638 152 QQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREdGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPP 231
|
...
gi 114544175 237 ETL 239
Cdd:COG3638 232 AEL 234
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
8-228 |
4.88e-65 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 200.49 E-value: 4.88e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpADPKQ 87
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT----------DLEDE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSMVFQQFNLWAHMTILQNVMEApvtvlardrgsvekaargylekvgigdkcdvypaqLSGGQQQRAAIARAL 167
Cdd:cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARAL 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLqAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
8-254 |
6.04e-65 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 202.73 E-value: 6.04e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPA 83
Cdd:COG1124 2 LEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV------TRRRRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DpkqvlrIRTNLSMVFQQ----FNlwAHMTILQNVMEaPVTVLARDRgsVEKAARGYLEKVGIGDKC-DVYPAQLSGGQQ 158
Cdd:COG1124 76 A------FRRRVQMVFQDpyasLH--PRHTVDRILAE-PLRIHGLPD--REERIAELLEQVGLPPSFlDRYPHQLSGGQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:COG1124 145 QRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREErGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVA 224
|
250
....*....|....*..
gi 114544175 238 TLFGAPKSERLRGFLKS 254
Cdd:COG1124 225 DLLAGPKHPYTRELLAA 241
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-211 |
1.19e-64 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 202.24 E-value: 1.19e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGE 76
Cdd:COG1116 1 MSAAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV--TGP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 77 SHHRrpadpkqvlrirtnlSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGG 156
Cdd:COG1116 79 GPDR---------------GVVFQEPALLPWLTVLDNVA-LGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGG 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDlagEGRTMIIVTHD 211
Cdd:COG1116 143 MRQRVAIARALANDPEVLLMDEPFGALDAltreRLQDELLRLWQE---TGKTVLFVTHD 198
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
8-239 |
2.75e-64 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 200.10 E-value: 2.75e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQ-----GEILFKGEPVvwkgeshhrrP 82
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPgapdeGEVLLDGKDI----------Y 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVLRIRTNLSMVFQQFNLWaHMTILQNVMEAPvtvlaRDRGSVEKAARGY-----LEKVGIGD--KCDVYPAQLSG 155
Cdd:cd03260 71 DLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGL-----RLHGIKLKEELDErveeaLRKAALWDevKDRLHALGLSG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEgRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGP 235
Cdd:cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
....
gi 114544175 236 PETL 239
Cdd:cd03260 224 TEQI 227
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
8-245 |
3.05e-64 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 204.15 E-value: 3.05e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPADPkq 87
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV------TDLPPKDR-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtNLSMVFQQFNLWAHMTILQNvMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:COG3839 76 ------NIAMVFQSYALYPHMTVYEN-IAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRAL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHD----MKMAhdvsDHVVFLHQGLIEEQGPPETLFGA 242
Cdd:COG3839 149 VREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRlGTTTIYVTHDqveaMTLA----DRIAVMNDGRIQQVGTPEELYDR 224
|
...
gi 114544175 243 PKS 245
Cdd:COG3839 225 PAN 227
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
8-244 |
3.87e-64 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 199.87 E-value: 3.87e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpaDPK 86
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDI------------TKK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQ----QFnlwAHMTILQNVMEAPvTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:COG1122 69 NLRELRRKVGLVFQnpddQL---FAPTVEEDVAFGP-ENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGA 242
Cdd:COG1122 145 IAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSD 224
|
..
gi 114544175 243 PK 244
Cdd:COG1122 225 YE 226
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
8-234 |
6.11e-64 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 198.90 E-value: 6.11e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshHRRPADpkq 87
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-------TGVPPE--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlriRTNLSMVFQQFNLWAHMTILQNVmeA-PVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:cd03259 71 ----RRNIGMVFQDYALFPHLTVAENI--AfGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRElGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
8-252 |
6.51e-64 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 203.07 E-value: 6.51e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpadpkq 87
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLF--------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirTNLS-------MVFQQFNLWAHMTILQNVMEAPvTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:COG1118 68 -----TNLPprerrvgFVFQHYALFPHMTVAENIAFGL-RVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALD----PELEQEVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:COG1118 142 VALARALAVEPEVLLLDEPFGALDakvrKELRRWLRRLHDEL---GGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTP 218
|
250
....*....|....*.
gi 114544175 237 ETLFGAPKSERLRGFL 252
Cdd:COG1118 219 DEVYDRPATPFVARFL 234
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
7-234 |
9.36e-64 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 198.88 E-value: 9.36e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrP 82
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL---------K 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVLRIRTNLSMVFQ--QFNLWAHMTILQNVMEaPVTVLARDRGSVEKAARGYLEKVGIGDKCDV---YPAQLSGGQ 157
Cdd:cd03257 72 LSRRLRKIRRKEIQMVFQdpMSSLNPRMTIGEQIAE-PLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlnrYPHELSGGQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
8-239 |
1.52e-62 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 196.05 E-value: 1.52e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLE-DSqqGEILFKGEPVVwkgeshhrrpadp 85
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMlLGLLRpTS--GEVRVLGEDVA------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVmeapvTVLAR----DRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:COG1131 66 RDPAEVRRRIGYVPQEPALYPDLTVRENL-----RFFARlyglPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRL 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:COG1131 141 GLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-247 |
7.85e-62 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 194.87 E-value: 7.85e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ-----QGEILFKGEPVVwkg 75
Cdd:COG1117 5 ASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDLIpgarvEGEILLDGEDIY--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 76 eshhrrpaDPKQ-VLRIRTNLSMVFQQFNLWAhMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGI----GDKCDVYP 150
Cdd:COG1117 82 --------DPDVdVVELRRRVGMVFQKPNPFP-KSIYDNVAYGLRLHGIKSKSELDEIVEESLRKAALwdevKDRLKKSA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDP-------ELeqevvkvIKDLAGEgRTMIIVTHDMKMAHDVSDHVV 223
Cdd:COG1117 153 LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPistakieEL-------ILELKKD-YTIVIVTHNMQQAARVSDYTA 224
|
250 260
....*....|....*....|....
gi 114544175 224 FLHQGLIEEQGPPETLFGAPKSER 247
Cdd:COG1117 225 FFYLGELVEFGPTEQIFTNPKDKR 248
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
7-232 |
1.84e-61 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 192.96 E-value: 1.84e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSHHRRpadp 85
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDL-----SRLKR---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:COG2884 72 REIPYLRRRIGVVFQDFRLLPDRTVYENVA-LPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIAR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEE 232
Cdd:COG2884 151 ALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-257 |
3.98e-60 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 193.48 E-value: 3.98e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrP 82
Cdd:PRK11153 1 MIELKNISKVFpqggRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT---------A 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVLRIRTNLSMVFQQFNLWAHMTILQNVmeA-PVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK11153 72 LSEKELRKARRQIGMIFQHFNLLSSRTVFDNV--AlPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229
|
250
....*....|....*..
gi 114544175 241 GAPKSERLRGFLKSTTH 257
Cdd:PRK11153 230 SHPKHPLTREFIQSTLH 246
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
8-254 |
3.11e-59 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 187.89 E-value: 3.11e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE-VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADPk 86
Cdd:cd03295 1 IEFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI---------REQDP- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvLRIRTNLSMVFQQFNLWAHMTILQNVMEAPvTVLARDRGSVEKAARGYLEKVGIGDK--CDVYPAQLSGGQQQRAAIA 164
Cdd:cd03295 71 --VELRRKIGYVIQQIGLFPHMTVEENIALVP-KLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 165 RALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:cd03295 148 RALAADPPLLLMDEPFGALDPitrdQLQEEFKRLQQEL---GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
250
....*....|....
gi 114544175 241 GAPKSERLRGFLKS 254
Cdd:cd03295 225 RSPANDFVAEFVGA 238
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
8-239 |
1.09e-58 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 186.23 E-value: 1.09e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSL-EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrPADPK 86
Cdd:cd03256 1 IEVENLSKTYPNGkKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDI----------NKLKG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLR-IRTNLSMVFQQFNLWAHMTILQNVMEA------PVTVLARDRGSVEK-AARGYLEKVGIGDKCDVYPAQLSGGQQ 158
Cdd:cd03256 71 KALRqLRRQIGMIFQQFNLIERLSVLENVLSGrlgrrsTWRSLFGLFPKEEKqRALAALERVGLLDKAYQRADQLSGGQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
|
..
gi 114544175 238 TL 239
Cdd:cd03256 231 EL 232
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
9-228 |
4.27e-58 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 183.82 E-value: 4.27e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpaDPK 86
Cdd:cd03225 1 ELKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL------------TKL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQ----QFnlwAHMTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:cd03225 69 SLKELRRKVGLVFQnpddQF---FGPTVEEEVAFGLEN-LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
8-253 |
8.15e-58 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 183.80 E-value: 8.15e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLevLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLL---EDSQQGEILFKGEPVVwkGESHHRRPad 84
Cdd:COG3840 2 LRLDDLTYRYGDF--PLRFDLTIAAGERVAILGPSGAGKSTLL---NLIagfLPPDSGRILWNGQDLT--ALPPAERP-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlrirtnLSMVFQQFNLWAHMTILQNV---MEAPVTVLARDRGSVEKAArgylEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:COG3840 73 ----------VSMLFQENNLFPHLTVAQNIglgLRPGLKLTAEQRAQVEQAL----ERVGLAGLLDRLPGQLSGGQRQRV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:COG3840 139 ALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
250
....*....|...
gi 114544175 241 GAPKSERLRGFLK 253
Cdd:COG3840 219 DGEPPPALAAYLG 231
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
7-239 |
2.04e-57 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 183.27 E-value: 2.04e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGS-LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADP 85
Cdd:TIGR02315 1 MLEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI---------TKLRG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPV-------TVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQ 158
Cdd:TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLgykptwrSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEdGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
|
..
gi 114544175 238 TL 239
Cdd:TIGR02315 232 EL 233
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
8-237 |
2.80e-57 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 182.64 E-value: 2.80e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHRRpadpkq 87
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI--TGLPPHEI------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrIRTNLSMVFQQFNLWAHMTILQNVMeapVTVLARDRGS------------VEKAARGYLEKVGIGDKCDVYPAQLSG 155
Cdd:cd03219 73 ---ARLGIGRTFQIPRLFPELTVLENVM---VAAQARTGSGlllararreereARERAEELLERVGLADLADRPAGELSY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGP 235
Cdd:cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
..
gi 114544175 236 PE 237
Cdd:cd03219 227 PD 228
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
8-245 |
2.89e-57 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 182.44 E-value: 2.89e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkGESHHRRPadpkq 87
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT--NLPPHKRP----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtnLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03300 74 -------VNTVFQNYALFPHLTVFENI-AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
8-225 |
2.73e-56 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 179.59 E-value: 2.73e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHRrpa 83
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV--TGPGPDR--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkqvlrirtnlSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:cd03293 76 ------------GYVFQQDALLPWLTVLDNVA-LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVAL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 164 ARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDlagEGRTMIIVTHDMKMAHDVSDHVVFL 225
Cdd:cd03293 143 ARALAVDPDVLLLDEPFSALDAltreQLQEELLDIWRE---TGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-245 |
8.80e-56 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 186.65 E-value: 8.80e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ---QGEILFKGEPVVWKGESHH 79
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 80 RRpadpkqvlRIrtnlSMVFQ----QFNLwahMTILQNVMEAPVtVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSG 155
Cdd:COG1123 82 GR--------RI----GMVFQdpmtQLNP---VTVGDQIAEALE-NLGLSRAEARARVLELLEAVGLERRLDRYPHQLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:COG1123 146 GQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDG 225
|
250
....*....|.
gi 114544175 235 PPETLFGAPKS 245
Cdd:COG1123 226 PPEEILAAPQA 236
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
8-228 |
1.11e-55 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 177.70 E-value: 1.11e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpaDPKQ 87
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPL------------SAMP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSMVFQQFNLWAhMTILQNvMEAPVTVlaRDRGSVEKAARGYLEKVGIGDKC---DVypAQLSGGQQQRAAIA 164
Cdd:COG4619 69 PPEWRRQVAYVPQEPALWG-GTVRDN-LPFPFQL--RERKFDRERALELLERLGLPPDIldkPV--ERLSGGERQRLALI 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 165 RALCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLREYlAEEGRAVLWVSHDPEQIERVADRVLTLEAG 207
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
7-240 |
2.52e-55 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 178.31 E-value: 2.52e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPADpk 86
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL------ASLSRRE-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvlrIRTNLSMVFQQFNLWAHMTILQNVM--EAP-VTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:COG1120 73 ----LARRIAYVPQEPPAPFGLTVRELVAlgRYPhLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:COG1120 149 ARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARErGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
4-237 |
4.60e-55 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 177.54 E-value: 4.60e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkGESHHRRPA 83
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDIT--GLPPHRIAR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkqvLRI-RTnlsmvFQQFNLWAHMTILQNVMeapVTVLARDRGSVEKA-----------------ARGYLEKVGIGDK 145
Cdd:COG0411 79 -----LGIaRT-----FQNPRLFPELTVLENVL---VAAHARLGRGLLAAllrlprarreerearerAEELLERVGLADR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 146 CDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVF 224
Cdd:COG0411 146 ADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVV 225
|
250
....*....|....
gi 114544175 225 LHQG-LIEEqGPPE 237
Cdd:COG0411 226 LDFGrVIAE-GTPA 238
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-237 |
5.23e-55 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 176.86 E-value: 5.23e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPT-PVIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEilfkgepVVWKG 75
Cdd:COG4181 1 MSSSSaPIIELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGT-------VRLAG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 76 ESHHRRPADPKQVLRiRTNLSMVFQQFNLWAHMTILQNVM---EapvtvLARDRGSVEKAARgYLEKVGIGDKCDVYPAQ 152
Cdd:COG4181 74 QDLFALDEDARARLR-ARHVGFVFQSFQLLPTLTALENVMlplE-----LAGRRDARARARA-LLERVGLGHRLDHYPAQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAhDVSDHVVFLHQGLIE 231
Cdd:COG4181 147 LSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRErGTTLVLVTHDPALA-ARCDRVLRLRAGRLV 225
|
....*.
gi 114544175 232 EQGPPE 237
Cdd:COG4181 226 EDTAAT 231
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
7-239 |
7.81e-55 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 176.59 E-value: 7.81e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpadpK 86
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVR-------------K 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWAHMTILQNVmeapvTVLARDRGSVEKAARG----YLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:COG4555 68 EPREARRQIGVLPDERGLYDRLTVRENI-----RYFAELYGLFDEELKKrieeLIELLGLEEFLDRRVGELSTGMKKKVA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:COG4555 143 LARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
7-244 |
2.72e-54 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 177.55 E-value: 2.72e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDSQQ--GEILFKGEPVVwkgeshh 79
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAiLGLLPPPGItsGEILFDGEDLL------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 80 rrPADPKQVLRIRTN-LSMVFQQ----FNlwAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDV---YPA 151
Cdd:COG0444 74 --KLSEKELRKIRGReIQMIFQDpmtsLN--PVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRldrYPH 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:COG0444 150 ELSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVMYAGRI 229
|
250
....*....|....
gi 114544175 231 EEQGPPETLFGAPK 244
Cdd:COG0444 230 VEEGPVEELFENPR 243
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
8-252 |
5.82e-53 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 173.74 E-value: 5.82e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADPK 86
Cdd:COG1125 2 IEFENVTKRYpDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDI---------RDLDPV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QvLRirtnLSM--VFQQFNLWAHMTILQNVMeapvTV---LARDRGSVEKAARGYLEKVGI-----GDKcdvYPAQLSGG 156
Cdd:COG1125 73 E-LR----RRIgyVIQQIGLFPHMTVAENIA----TVprlLGWDKERIRARVDELLELVGLdpeeyRDR---YPHELSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHDM----KMAhdvsDHVVFLHQG 228
Cdd:COG1125 141 QQQRVGVARALAADPPILLMDEPFGALDPitreQLQDELLRLQREL---GKTIVFVTHDIdealKLG----DRIAVMREG 213
|
250 260
....*....|....*....|....
gi 114544175 229 LIEEQGPPETLFGAPKSERLRGFL 252
Cdd:COG1125 214 RIVQYDTPEEILANPANDFVADFV 237
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
8-252 |
8.62e-53 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 171.37 E-value: 8.62e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhRRPADPKQ 87
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT-------DVPVQERN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VlrirtnlSMVFQQFNLWAHMTILQNV---MEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIA 164
Cdd:cd03296 76 V-------GFVFQHYALFRHMTVFDNVafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 165 RALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
....*....
gi 114544175 244 KSERLRGFL 252
Cdd:cd03296 229 ASPFVYSFL 237
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-250 |
1.16e-52 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 171.04 E-value: 1.16e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNpTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhr 80
Cdd:COG1121 1 MMM-MPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpadpkqvlRIRTNLSMVFQQFNLWAHMtilqnvmeaPVTVL------------------ARDRGSVEKAargyLEKVGI 142
Cdd:COG1121 72 ---------RARRRIGYVPQRAEVDWDF---------PITVRdvvlmgrygrrglfrrpsRADREAVDEA----LERVGL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 143 GDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHV 222
Cdd:COG1121 130 EDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRV 209
|
250 260
....*....|....*....|....*...
gi 114544175 223 VFLHQGLIEEqGPPETLFGAPKSERLRG 250
Cdd:COG1121 210 LLLNRGLVAH-GPPEEVLTPENLSRAYG 236
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
8-253 |
8.05e-52 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 169.75 E-value: 8.05e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS---------------LEVLKGVDVTA---------HRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGE 63
Cdd:cd03294 1 IKIKGLYKIFGKnpqkafkllakgkskEEILKKTGQTVgvndvsldvREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 64 ILFKGEPVvwkgeshhrRPADPKQVLRIRTN-LSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGI 142
Cdd:cd03294 81 VLIDGQDI---------AAMSRKELRELRRKkISMVFQSFALLPHRTVLENV-AFGLEVQGVPRAEREERAAEALELVGL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 143 GDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHDMKMAHDV 218
Cdd:cd03294 151 EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPlirrEMQDELLRLQAEL---QKTIVFITHDLDEALRL 227
|
250 260 270
....*....|....*....|....*....|....*
gi 114544175 219 SDHVVFLHQGLIEEQGPPETLFGAPKSERLRGFLK 253
Cdd:cd03294 228 GDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFR 262
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
8-230 |
9.88e-51 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 163.72 E-value: 9.88e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLE-DSqqGEILFKGEPVVwkgeshhrrpadp 85
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIiLGLLKpDS--GEIKVLGKDIK------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVmeapvtvlardrgsvekaargylekvgigdkcdvypaQLSGGQQQRAAIAR 165
Cdd:cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENL-------------------------------------KLSGGMKQRLALAQ 108
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
5-246 |
1.13e-50 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 170.28 E-value: 1.13e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGS-----LEVLK----------------GV-DV--TAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ 60
Cdd:COG4175 1 MPKIEVRNLYKIFGKrperaLKLLDqgkskdeilektgqtvGVnDAsfDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 61 QGEILFKGEPVVwkgeshhrrPADPKQVLRIRTN-LSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEK 139
Cdd:COG4175 81 AGEVLIDGEDIT---------KLSKKELRELRRKkMSMVFQHFALLPHRTVLENV-AFGLEIQGVPKAERRERAREALEL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 140 VGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHD---- 211
Cdd:COG4175 151 VGLAGWEDSYPDELSGGMQQRVGLARALATDPDILLMDEAFSALDPlirrEMQDELLELQAKL---KKTIVFITHDldea 227
|
250 260 270
....*....|....*....|....*....|....*
gi 114544175 212 MKMAhdvsDHVVFLHQGLIEEQGPPETLFGAPKSE 246
Cdd:COG4175 228 LRLG----DRIAIMKDGRIVQIGTPEEILTNPAND 258
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
8-234 |
5.22e-50 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 163.19 E-value: 5.22e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPADpkq 87
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV------TDLPPKD--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirTNLSMVFQQFNLWAHMTILQNvMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03301 72 -----RDIAMVFQNYALYPHMTVYDN-IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 168 CMEPEALLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03301 146 VREPKVFLMDEPLSNLDAklrvQMRAELKRLQQRL---GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
7-228 |
1.37e-49 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 162.03 E-value: 1.37e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSHHRRpadp 85
Cdd:TIGR02673 1 MIEFHNVSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV-----NRLRG---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:TIGR02673 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENV-ALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
9-228 |
1.49e-49 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 160.10 E-value: 1.49e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpaDPKQV 88
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI------------AKLPL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 89 LRIRTNLSMVFQqfnlwahmtilqnvmeapvtvlardrgsvekaargylekvgigdkcdvypaqLSGGQQQRAAIARALC 168
Cdd:cd00267 69 EELRRRIGYVPQ----------------------------------------------------LSGGQRQRVALARALL 96
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 169 MEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
10-225 |
1.94e-49 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 161.63 E-value: 1.94e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 10 IRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGEShhrrpadPKQVL 89
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSK-------KASKF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 90 RiRTNLSMVFQQFNLWAHMTILQNVMEAPVTVlARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCM 169
Cdd:TIGR03608 74 R-REKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 170 EPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAhDVSDHVVFL 225
Cdd:TIGR03608 152 PPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
8-252 |
3.26e-49 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 165.64 E-value: 3.26e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshHRRPADPKQ 87
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV-------SRLHARDRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VlrirtnlSMVFQQFNLWAHMTILQNVMEApVTVLAR----DRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:PRK10851 76 V-------GFVFQHYALFRHMTVFDNIAFG-LTVLPRrerpNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGA 242
Cdd:PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227
|
250
....*....|
gi 114544175 243 PKSERLRGFL 252
Cdd:PRK10851 228 PATRFVLEFM 237
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
8-249 |
9.05e-48 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 159.13 E-value: 9.05e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgeshhRRPADP 85
Cdd:TIGR04520 1 IEVENVSFSYpeSEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDG-----------LDTLDE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQ----QFnlwAHMTI-------LQNVMEAPVTVLARdrgsVEKAargyLEKVGIGDKCDVYPAQLS 154
Cdd:TIGR04520 70 ENLWEIRKKVGMVFQnpdnQF---VGATVeddvafgLENLGVPREEMRKR----VDEA----LKLVGMEDFRDREPHLLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQ 233
Cdd:TIGR04520 139 GGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEeGITVISITHDMEEAVL-ADRVIVMNKGKIVAE 217
|
250
....*....|....*.
gi 114544175 234 GPPETLFGapKSERLR 249
Cdd:TIGR04520 218 GTPREIFS--QVELLK 231
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
8-239 |
1.03e-47 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 157.60 E-value: 1.03e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshHRRPADpkq 87
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-------TGLPPH--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vLRIRTNLSMVFQQFNLWAHMTILQNVMeapvtvLARDRGSVEKAARGyLEKVgigdkCDVYPA----------QLSGGQ 157
Cdd:cd03224 71 -ERARAGIGYVPEGRRIFPELTVEENLL------LGAYARRRAKRKAR-LERV-----YELFPRlkerrkqlagTLSGGE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:cd03224 138 QQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
..
gi 114544175 238 TL 239
Cdd:cd03224 218 EL 219
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-244 |
3.31e-47 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 164.09 E-value: 3.31e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKS----TLLRccnLLEDSQ---QGEILFKGEPV 71
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILR---LLPDPAahpSGSILFDGQDL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 72 VwkgeshhrrPADPKQVLRIRTN-LSMVFQQ----FNlwAHMTILQNVMEapvtVLARDRGSVEKAARG----YLEKVGI 142
Cdd:COG4172 79 L---------GLSERELRRIRGNrIAMIFQEpmtsLN--PLHTIGKQIAE----VLRLHRGLSGAAARAraleLLERVGI 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 143 GD---KCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDV 218
Cdd:COG4172 144 PDperRLDAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRElGMALLLITHDLGVVRRF 223
|
250 260
....*....|....*....|....*.
gi 114544175 219 SDHVVFLHQGLIEEQGPPETLFGAPK 244
Cdd:COG4172 224 ADRVAVMRQGEIVEQGPTAELFAAPQ 249
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
9-234 |
3.53e-47 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 154.90 E-value: 3.53e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEdSQQGEILFKGEPVvwkgeshhrrpadpkq 87
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTlAGLLK-PSSGEILLDGKDL---------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtnlsmvfqqfnlwAHMTILQnvmeapvtvLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03214 64 ------------------ASLSPKE---------LARKIAYVPQA----LELLGLAHLADRPFNELSGGERQRVLLARAL 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARErGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
8-252 |
3.56e-47 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 160.27 E-value: 3.56e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpadpKQ 87
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT-------------HR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRtNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:PRK11432 74 SIQQR-DICMVFQSYALFPHMSLGENV-GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSE 246
Cdd:PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASR 231
|
....*.
gi 114544175 247 RLRGFL 252
Cdd:PRK11432 232 FMASFM 237
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-246 |
7.39e-47 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 156.54 E-value: 7.39e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCN-LLEDSQQGEIlfKGEpVVWKGESHHRRPADPk 86
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNrLLELNEEARV--EGE-VRLFGRNIYSPDVDP- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvLRIRTNLSMVFQQFNLWAHMTILQNV-MEAPVTVLARDRGSVEKAARGYLEKVG----IGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK14267 81 --IEVRREVGMVFQYPNPFPHLTIYDNVaIGVKLNGLVKSKKELDERVEWALKKAAlwdeVKDRLNDYPSNLSGGQRQRL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEgRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFG 241
Cdd:PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
....*
gi 114544175 242 APKSE 246
Cdd:PRK14267 238 NPEHE 242
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
4-245 |
7.82e-47 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 159.43 E-value: 7.82e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgeshhrrpa 83
Cdd:TIGR03265 1 SSPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkqvlRIRTNLS-------MVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGG 156
Cdd:TIGR03265 66 ------RDITRLPpqkrdygIVFQSYALFPNLTVADNI-AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGP 235
Cdd:TIGR03265 139 QQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRlGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
250
....*....|
gi 114544175 236 PETLFGAPKS 245
Cdd:TIGR03265 219 PQEIYRHPAT 228
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
8-228 |
8.05e-47 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 153.69 E-value: 8.05e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS--LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE---DSQQGEILFKGEPVvwkgeshhrRP 82
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLL---KLLLrlyDPTSGEILIDGVDL---------RD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQvlrIRTNLSMVFQQFNLWaHMTILQNVmeapvtvlardrgsvekaargylekvgigdkcdvypaqLSGGQQQRAA 162
Cdd:cd03228 69 LDLES---LRKNIAYVPQDPFLF-SGTIRENI--------------------------------------LSGGQRQRIA 106
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGeGRTMIIVTHDMKMAHDVsDHVVFLHQG 228
Cdd:cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDA-DRIIVLDDG 170
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
5-244 |
2.46e-46 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 158.57 E-value: 2.46e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhRRPAD 84
Cdd:PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT-------HVPAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKQVlrirtnlSMVFQQFNLWAHMTILQNV-----MEAPVTVLARDRgsVEKAargyLEKVGIGDKCDVYPAQLSGGQQQ 159
Cdd:PRK09452 85 NRHV-------NTVFQSYALFPHMTVFENVafglrMQKTPAAEITPR--VMEA----LRMVQLEEFAQRKPHQLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPET 238
Cdd:PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
....*.
gi 114544175 239 LFGAPK 244
Cdd:PRK09452 232 IYEEPK 237
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-246 |
7.94e-46 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 153.92 E-value: 7.94e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLL-----EDSQQGEILFKGEPVVwkgeshhrr 81
Cdd:PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIF--------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 padPKQVLRIRTNLSMVFQQFNLWAHMTILQNVMEAP-VTVLARDRGSVEKAARGYLEKVG----IGDKCDVYPAQLSGG 156
Cdd:PRK14247 74 ---KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLkLNRLVKSKKELQERVRWALEKAQlwdeVKDRLDAPAGKLSGG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPE----LEQEVVKVIKDLagegrTMIIVTHDMKMAHDVSDHVVFLHQGLIEE 232
Cdd:PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPEntakIESLFLELKKDM-----TIVLVTHFPQQAARISDYVAFLYKGQIVE 225
|
250
....*....|....
gi 114544175 233 QGPPETLFGAPKSE 246
Cdd:PRK14247 226 WGPTREVFTNPRHE 239
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
5-239 |
8.84e-46 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 153.21 E-value: 8.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDSQqGEILFKGEPVvwkgesHHRRPA 83
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAiSGLLPPRS-GSIRFDGEDI------TGLPPH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DpkqvlRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTvlARDRGSVEKAargyLEKVgigdkCDVYP----------AQL 153
Cdd:COG0410 74 R-----IARLGIGYVPEGRRIFPSLTVEENLLLGAYA--RRDRAEVRAD----LERV-----YELFPrlkerrrqraGTL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 154 SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQ 233
Cdd:COG0410 138 SGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLE 217
|
....*.
gi 114544175 234 GPPETL 239
Cdd:COG0410 218 GTAAEL 223
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
8-244 |
1.05e-45 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 154.15 E-value: 1.05e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG-----SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrP 82
Cdd:TIGR04521 1 IKLKNVSYIYQpgtpfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDI----------T 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVLR-IRTNLSMVFQ----QfnLWAhMTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKC-DVYPAQLSGG 156
Cdd:TIGR04521 71 AKKKKKLKdLRKKVGLVFQfpehQ--LFE-ETVYKDIAFGPKN-LGLSEEEAEERVKEALELVGLDEEYlERSPFELSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGP 235
Cdd:TIGR04521 147 QMRRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEkGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGT 226
|
....*....
gi 114544175 236 PETLFGAPK 244
Cdd:TIGR04521 227 PREVFSDVD 235
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
8-252 |
2.37e-45 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 152.10 E-value: 2.37e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEvLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrPADPkq 87
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT---------NLPP-- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrIRTNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03299 69 ---EKRDISYVPQNYALFPHMTVYKNI-AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSE 246
Cdd:cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNE 224
|
....*.
gi 114544175 247 RLRGFL 252
Cdd:cd03299 225 FVAEFL 230
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1-239 |
2.86e-45 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 161.16 E-value: 2.86e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDsQQGEILFKGEPVvwkges 77
Cdd:COG2274 467 LPRLKGDIELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLlLGLYEP-TSGRILIDGIDL------ 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 78 hhrRPADPKQVlriRTNLSMVFQQFNLWaHMTILQNV-MEAPVTVLARdrgsVEKAAR-------------GYLEKVGIG 143
Cdd:COG2274 540 ---RQIDPASL---RRQIGVVLQDVFLF-SGTIRENItLGDPDATDEE----IIEAARlaglhdfiealpmGYDTVVGEG 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 144 DkcdvypAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGeGRTMIIVTHDMKMAHDVsDHVV 223
Cdd:COG2274 609 G------SNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRLSTIRLA-DRII 680
|
250
....*....|....*.
gi 114544175 224 FLHQGLIEEQGPPETL 239
Cdd:COG2274 681 VLDKGRIVEDGTHEEL 696
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-246 |
1.11e-44 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 157.54 E-value: 1.11e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAY-----------GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTL----LRccnlLEDSQqGEILF 66
Cdd:COG4172 270 PDAPPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLglalLR----LIPSE-GEIRF 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 67 KGEPVvwkgeshhrRPADPKQVLRIRTNLSMVFQ----QFNlwAHMTILQNVMEaPVTVLAR--DRGSVEKAARGYLEKV 140
Cdd:COG4172 345 DGQDL---------DGLSRRALRPLRRRMQVVFQdpfgSLS--PRMTVGQIIAE-GLRVHGPglSAAERRARVAEALEEV 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 141 GIGDKC-DVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDV 218
Cdd:COG4172 413 GLDPAArHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREhGLAYLFISHDLAVVRAL 492
|
250 260
....*....|....*....|....*...
gi 114544175 219 SDHVVFLHQGLIEEQGPPETLFGAPKSE 246
Cdd:COG4172 493 AHRVMVMKDGKVVEQGPTEQVFDAPQHP 520
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
2-240 |
3.54e-44 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 151.54 E-value: 3.54e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTP---VIEIRNLHKAYGS-----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEI----LFKGE 69
Cdd:PRK13631 13 PNPLSddiILRVKNLYCVFDEkqeneLVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 70 PVVWKGESHHRRPADPKQVLRIRTNLSMVFQ--QFNLWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDK-C 146
Cdd:PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQfpEYQLFKD-TIEKDIMFGPVA-LGVKKSEAKKLAKFYLNKMGLDDSyL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 147 DVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLH 226
Cdd:PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250
|
250
....*....|....
gi 114544175 227 QGLIEEQGPPETLF 240
Cdd:PRK13631 251 KGKILKTGTPYEIF 264
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
15-252 |
4.75e-44 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 152.31 E-value: 4.75e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 15 KAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrPADPKQVLRI-RT 93
Cdd:TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM---------KQSPVELREVrRK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 94 NLSMVFQQFNLWAHMTILQNVMEAPvTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEA 173
Cdd:TIGR01186 72 KIGMVFQQFALFPHMTILQNTSLGP-ELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 174 LLFDEPTSALDP----ELEQEVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSERLR 249
Cdd:TIGR01186 151 LLMDEAFSALDPlirdSMQDELKKLQATL---QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
...
gi 114544175 250 GFL 252
Cdd:TIGR01186 228 EFI 230
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
8-239 |
1.16e-42 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 152.63 E-value: 1.16e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE---DSQQGEILFKGEPVvwkgeshhrRPA 83
Cdd:COG1132 340 IEFENVSFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLV---NLLLrfyDPTSGRILIDGVDI---------RDL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVlriRTNLSMVFQQFNLWaHMTILQNVMeapvtvLAR---DRGSVEKAAR-------------GYLEKVGIGDkcd 147
Cdd:COG1132 408 TLESL---RRQIGVVPQDTFLF-SGTIRENIR------YGRpdaTDEEVEEAAKaaqahefiealpdGYDTVVGERG--- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 vypAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVsDHVVFLHQ 227
Cdd:COG1132 475 ---VNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLM-KGRTTIVIAHRLSTIRNA-DRILVLDD 549
|
250
....*....|..
gi 114544175 228 GLIEEQGPPETL 239
Cdd:COG1132 550 GRIVEQGTHEEL 561
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
9-230 |
1.16e-42 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 144.21 E-value: 1.16e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkGESHHR-------R 81
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL---EKERKRigyvpqrR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 PADPKQVLRIRTNLSMvfqqfNLWAHMTILQNVMEApvtvlarDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:cd03235 78 SIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKA-------DKAKVDEA----LERVGLSELADRQIGELSGGQQQRV 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-239 |
1.41e-42 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 152.22 E-value: 1.41e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLL---EDSQQGEILFKGEPVvwkges 77
Cdd:COG4988 331 AAGPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLL---NLLlgfLPPYSGSILINGVDL------ 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 78 hhrRPADPKQvlrIRTNLSMVFQQfNLWAHMTILQNVMeapvtvLARDRGSVE--KAArgyLEKVGIGDKCDVYP----- 150
Cdd:COG4988 402 ---SDLDPAS---WRRQIAWVPQN-PYLFAGTIRENLR------LGRPDASDEelEAA---LEAAGLDEFVAALPdgldt 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 ------AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVF 224
Cdd:COG4988 466 plgeggRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLA-KGRTVILITHRLALLAQ-ADRILV 543
|
250
....*....|....*
gi 114544175 225 LHQGLIEEQGPPETL 239
Cdd:COG4988 544 LDDGRIVEQGTHEEL 558
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-244 |
1.76e-42 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 147.19 E-value: 1.76e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAY---GSL-----EVLK---GVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGE 69
Cdd:COG4608 1 AAMAEPLLEVRDLKKHFpvrGGLfgrtvGVVKavdGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 70 PVVwkgeshhrrPADPKQVLRIRTNLSMVFQ--QFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIG-DKC 146
Cdd:COG4608 81 DIT---------GLSGRELRPLRRRMQMVFQdpYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRpEHA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 147 DVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFL 225
Cdd:COG4608 152 DRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDElGLTYLFISHDLSVVRHISDRVAVM 231
|
250
....*....|....*....
gi 114544175 226 HQGLIEEQGPPETLFGAPK 244
Cdd:COG4608 232 YLGKIVEIAPRDELYARPL 250
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-239 |
3.77e-42 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 151.07 E-value: 3.77e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLL---EDSQQGEILFKGEPVvwkge 76
Cdd:COG4987 328 APGGPSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLL---ALLlrfLDPQSGSITLGGVDL----- 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 77 sHHRRPADpkqvlrIRTNLSMVFQQFNLWaHMTILQNVMeapvtvLARDRGSvEKAARGYLEKVGIGDKCDVYP------ 150
Cdd:COG4987 400 -RDLDEDD------LRRRIAVVPQRPHLF-DTTLRENLR------LARPDAT-DEELWAALERVGLGDWLAALPdgldtw 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 -----AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVsDHVVFL 225
Cdd:COG4987 465 lgeggRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEAL-AGRTVLLITHRLAGLERM-DRILVL 542
|
250
....*....|....
gi 114544175 226 HQGLIEEQGPPETL 239
Cdd:COG4987 543 EDGRIVEQGTHEEL 556
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
5-237 |
5.85e-42 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 151.42 E-value: 5.85e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGeshhr 80
Cdd:PRK10535 2 TALLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLD----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpADPKQVLRiRTNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:PRK10535 77 --ADALAQLR-REHFGFIFQRYHLLSHLTAAQNV-EVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPAQ 228
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
9-230 |
6.86e-42 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 142.01 E-value: 6.86e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYG-SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpadpKQ 87
Cdd:cd03226 1 RIENISFSYKkGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI--------------KA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTnLSMVFQ--QFNLWAhmtilqNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:cd03226 67 KERRKS-IGYVMQdvDYQLFT------DSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
8-230 |
2.05e-41 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 141.39 E-value: 2.05e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSHHRRPADPK 86
Cdd:cd03292 1 IEFINVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV-----SDLRGRAIPY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvlrIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRgSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:cd03292 76 ----LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-EIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-223 |
2.86e-41 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 147.47 E-value: 2.86e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPA 83
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPV---------RFR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLR--IrtnlSMVFQQFNLWAHMTILQNVM--EAPVTVLARDRGSVEKAARGYLEKVGIgdkcDVYPAQ----LSG 155
Cdd:COG1129 72 SPRDAQAagI----AIIHQELNLVPNLSVAENIFlgREPRRGGLIDWRAMRRRARELLARLGL----DIDPDTpvgdLSV 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPElEQEVV-KVIKDLAGEGRTMIIVTHDMKMAHDVSDHVV 223
Cdd:COG1129 144 AQQQLVEIARALSRDARVLILDEPTASLTER-EVERLfRIIRRLKAQGVAIIYISHRLDEVFEIADRVT 211
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
8-250 |
3.55e-41 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 144.47 E-value: 3.55e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRnLHKAYGSLEVlkGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvVWKGESH------HRR 81
Cdd:COG4148 3 LEVD-FRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGE--VLQDSARgiflppHRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 PadpkqvlrirtnLSMVFQQFNLWAHMTILQNVMEA-PVTVLARDRGSVEKAArgylEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:COG4148 78 R------------IGYVFQEARLFPHLSVRGNLLYGrKRAPRAERRISFDEVV----ELLGIGHLLDRRPATLSGGERQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRT-MIIVTHDMK-MAHdVSDHVVFLHQGLIEEQGPPET 238
Cdd:COG4148 142 VAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIpILYVSHSLDeVAR-LADHVVLLEQGRVVASGPLAE 220
|
250
....*....|..
gi 114544175 239 LFGAPKSERLRG 250
Cdd:COG4148 221 VLSRPDLLPLAG 232
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
27-234 |
7.59e-41 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 139.55 E-value: 7.59e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 27 DVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGEShhRRPadpkqvlrirtnLSMVFQQFNLWA 106
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--DRP------------VSMLFQENNLFA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 107 HMTILQNVMEAPVTVL---ARDRGSVEKAARgyleKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSAL 183
Cdd:cd03298 84 HLTVEQNVGLGLSPGLkltAEDRQAIEVALA----RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 114544175 184 DPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03298 160 DPALRAEMLDLVLDLHAEtKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
38-252 |
8.19e-41 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 143.02 E-value: 8.19e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 38 LIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKgeSHHRRPadpkqvlrirtnLSMVFQQFNLWAHMTILQNVmEA 117
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV--PPHLRH------------INMVFQSYALFPHMTVEENV-AF 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 118 PVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKD 197
Cdd:TIGR01187 66 GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 198 LAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSERLRGFL 252
Cdd:TIGR01187 146 IQEQlGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
7-247 |
1.88e-40 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 140.60 E-value: 1.88e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWkgeshhrrpaDP 85
Cdd:PRK13639 1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKY----------DK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFN--LWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:PRK13639 71 KSLLEVRKTVGIVFQNPDdqLFAP-TVEEDVAFGPLN-LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
....
gi 114544175 244 KSER 247
Cdd:PRK13639 229 ETIR 232
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
23-181 |
1.94e-40 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 136.62 E-value: 1.94e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRRpadpkqvlrirtNLSMVFQQF 102
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRK------------EIGYVFQDP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 103 NLWAHMTILQNVMEAPVTVLARDRGSVEKAARgYLEKVGIGD----KCDVYPAQLSGGQQQRAAIARALCMEPEALLFDE 178
Cdd:pfam00005 69 QLFPRLTVRENLRLGLLLKGLSKREKDARAEE-ALEKLGLGDladrPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
...
gi 114544175 179 PTS 181
Cdd:pfam00005 148 PTA 150
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
6-244 |
2.77e-39 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 136.83 E-value: 2.77e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQgEILFKGEpVVWKGESHHRRPADp 85
Cdd:PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNP-EVTITGS-IVYNGHNIYSPRTD- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 kqVLRIRTNLSMVFQQFNLWAhMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGD--KCDVYPAQ--LSGGQQQRA 161
Cdd:PRK14239 81 --TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDevKDRLHDSAlgLSGGQQQRV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDP----ELEQEVVKVIKDLagegrTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK14239 158 CIARVLATSPKIILLDEPTSALDPisagKIEETLLGLKDDY-----TMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232
|
....*..
gi 114544175 238 TLFGAPK 244
Cdd:PRK14239 233 QMFMNPK 239
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
6-238 |
6.57e-39 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 136.05 E-value: 6.57e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEdSQQGEILFKGEPVV-WKGESHHRRPA 83
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAlSGELS-PDSGEVRLNGRPLAdWSPAELARRRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkqVLRIRTNLSMVFQqfnlwahmtiLQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:PRK13548 80 ----VLPQHSSLSFPFT----------VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 164 ARALC------MEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:PRK13548 146 ARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHErGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTP 225
|
..
gi 114544175 237 ET 238
Cdd:PRK13548 226 AE 227
|
|
| ABC_ATP_DarD |
NF038007 |
darobactin export ABC transporter ATP-binding protein; |
8-210 |
1.04e-38 |
|
darobactin export ABC transporter ATP-binding protein;
Pssm-ID: 411600 [Multi-domain] Cd Length: 218 Bit Score: 134.46 E-value: 1.04e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHhrrpa 83
Cdd:NF038007 2 LNMQNAEKCYITktikTKVLNHLNFSVEKGDFVSIMGPSGSGKSTLLNIIGMFDSLDSGSLTLAGKEVTNLSYSQ----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpKQVLRiRTNLSMVFQQFNLWAHMTILQNVmEAPVtvlaRDRGsVEKAARgyLEKV-------GIGDKCDVYPAQLSGG 156
Cdd:NF038007 77 --KIILR-RELIGYIFQSFNLIPHLSIFDNV-ALPL----KYRG-VAKKER--IERVnqvlnlfGIDNRRNHKPMQLSGG 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:NF038007 146 QQQRVAIARAMVSNPALLLADEPTGNLDSKNARAVLQQLKYINQKGTTIIMVTH 199
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
8-237 |
1.55e-38 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 134.83 E-value: 1.55e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVV-WKGESHHRRPAdpk 86
Cdd:COG4604 2 IEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVAtTPSRELAKRLA--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qVLRIRTNLSM---VFQ--QFNLWAH----MTilqnvmeapvtvlARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQ 157
Cdd:COG4604 79 -ILRQENHINSrltVRElvAFGRFPYskgrLT-------------AEDREIIDEA----IAYLDLEDLADRYLDELSGGQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADElGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTP 220
|
.
gi 114544175 237 E 237
Cdd:COG4604 221 E 221
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
27-234 |
3.50e-38 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 133.06 E-value: 3.50e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 27 DVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkGESHHRRPadpkqvlrirtnLSMVFQQFNLWA 106
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT--GLAPYQRP------------VSMLFQENNLFA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 107 HMTILQNV---MEAPVTVLARDRGSVEKAARgyleKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSAL 183
Cdd:TIGR01277 84 HLTVRQNIglgLHPGLKLNAEQQEKVVDAAQ----QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 114544175 184 DPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:TIGR01277 160 DPLLREEMLALVKQLCSErQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
6-211 |
8.78e-38 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 131.45 E-value: 8.78e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDSQqGEILFKGEPVVWKGESHHRRpad 84
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRIlAGLLPPSA-GEVLWNGEPIRDAREDYRRR--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlrirtnLSMVFQQFNLWAHMTILQNV-MEAPVTVLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:COG4133 77 ----------LAYLGHADGLKPELTVRENLrFWAALYGLRADREAIDEA----LEAVGLAGLADLPVRQLSAGQKRRVAL 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHD 211
Cdd:COG4133 143 ARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGAVLLTTHQ 190
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
8-238 |
1.07e-37 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 132.93 E-value: 1.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVV-WKGESHHRRPAdpk 86
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAaWSPWELARRRA--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qVLRIRTNLSMVFqqfnlwahmTILQNVM--EAPVtvlARDRGSVEKAARGYLEKVGIGDKCD-VYPaQLSGGQQQRAAI 163
Cdd:COG4559 79 -VLPQHSSLAFPF---------TVEEVVAlgRAPH---GSSAAQDRQIVREALALVGLAHLAGrSYQ-TLSGGEQQRVQL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 164 ARALC-------MEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:COG4559 145 ARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTP 224
|
..
gi 114544175 237 ET 238
Cdd:COG4559 225 EE 226
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
8-254 |
1.08e-37 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 135.36 E-value: 1.08e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPADpk 86
Cdd:PRK11650 4 LKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV------NELEPAD-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvlriRtNLSMVFQQFNLWAHMTILQNvmeapvtvLA---RDRG--------SVEKAARgYLEkvgIGDKCDVYPAQLSG 155
Cdd:PRK11650 76 -----R-DIAMVFQNYALYPHMSVREN--------MAyglKIRGmpkaeieeRVAEAAR-ILE---LEPLLDRKPRELSG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHD----MKMAhdvsDHVVFLHQGLI 230
Cdd:PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRlKTTSLYVTHDqveaMTLA----DRVVVMNGGVA 213
|
250 260
....*....|....*....|....
gi 114544175 231 EEQGPPETLFGAPKSERLRGFLKS 254
Cdd:PRK11650 214 EQIGTPVEVYEKPASTFVASFIGS 237
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
8-228 |
2.82e-37 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 130.70 E-value: 2.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpadp 85
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVMeapvtVLARDRGSVEKAAR----GYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLR-----FYARLKGLPKSEIKeeveLLLRVLGLTDKANKRARTLSGGMKRKL 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLaGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDG 208
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
8-228 |
3.21e-37 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 128.70 E-value: 3.21e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADPKQ 87
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV---------SFASPRD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtnlsmvfqqfnlwahmtilqnvmeapvtvlARDRGsvekaargylekVGIgdkcdVYpaQLSGGQQQRAAIARAL 167
Cdd:cd03216 72 -----------------------------------ARRAG------------IAM-----VY--QLSVGERQMVEIARAL 97
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-246 |
7.54e-37 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 130.94 E-value: 7.54e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpVVWKGESHHRRPAdpk 86
Cdd:PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK-VLYFGKDIFQIDA--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVG----IGDKCDVYPAQLSGGQQQRAA 162
Cdd:PRK14246 86 --IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGlwkeVYDRLNSPASQLSGGQQQRLT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEgRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGA 242
Cdd:PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
....
gi 114544175 243 PKSE 246
Cdd:PRK14246 243 PKNE 246
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
10-254 |
1.39e-36 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 132.85 E-value: 1.39e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 10 IRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPADpkqvl 89
Cdd:PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM------NDVPPAE----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 90 rirTNLSMVFQQFNLWAHMTILQNvMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCM 169
Cdd:PRK11000 75 ---RGVGMVFQSYALYPHLSVAEN-MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 170 EPEALLFDEPTSALDPELE-Q---EVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:PRK11000 151 EPSVFLLDEPLSNLDAALRvQmriEISRLHKRL---GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227
|
....*....
gi 114544175 246 ERLRGFLKS 254
Cdd:PRK11000 228 RFVAGFIGS 236
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
7-215 |
1.56e-36 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 129.13 E-value: 1.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGS----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshHRRP 82
Cdd:PRK10584 6 IVEVHHLKKSVGQgeheLSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL-------HQMD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVLRIRtNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:PRK10584 79 EEARAKLRAK-HVGFVFQSFMLIPTLNALENV-ELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMA 215
Cdd:PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREhGTTLILVTHDLQLA 210
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-254 |
1.74e-36 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 132.65 E-value: 1.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSH---HRR 81
Cdd:PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-----SHvppYQR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 PadpkqvlrirtnLSMVFQQFNLWAHMTILQNVMEApvtvLARDR---GSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQ 158
Cdd:PRK11607 92 P------------INMMFQSYALFPHMTVEQNIAFG----LKQDKlpkAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPEL----EQEVVKVIKDLageGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLrdrmQLEVVDILERV---GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
|
250 260
....*....|....*....|
gi 114544175 235 PPETLFGAPKSERLRGFLKS 254
Cdd:PRK11607 233 EPEEIYEHPTTRYSAEFIGS 252
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-228 |
2.26e-36 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 134.38 E-value: 2.26e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLE-DSqqGEILFKGEPVvwkgeshhr 80
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKIlYGLYQpDS--GEILIDGKPV--------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPADPKQVlrIRTNLSMVFQQFNLWAHMTILQNVM--EAPVTVLARDRGSVEKAARGYLEKVGIgdkcDVYP----AQLS 154
Cdd:COG3845 70 RIRSPRDA--IALGIGMVHQHFMLVPNLTVAENIVlgLEPTKGGRLDRKAARARIRELSERYGL----DVDPdakvEDLS 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPeleQEVV---KVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:COG3845 144 VGEQQRVEILKALYRGARILILDEPTAVLTP---QEADelfEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRG 217
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
8-239 |
2.78e-36 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 128.50 E-value: 2.78e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG-SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpadpK 86
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI--------------R 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLR--IRTNLSMVFQQFNLWaHMTILQNVMEAPVTVLARDrgsVEKAAR-------------GYLEKVG-IGDKcdvyp 150
Cdd:cd03253 67 EVTLdsLRRAIGVVPQDTVLF-NDTIGYNIRYGRPDATDEE---VIEAAKaaqihdkimrfpdGYDTIVGeRGLK----- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 aqLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGLI 230
Cdd:cd03253 138 --LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVN-ADKIIVLKDGRI 213
|
....*....
gi 114544175 231 EEQGPPETL 239
Cdd:cd03253 214 VERGTHEEL 222
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-252 |
2.91e-36 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 134.45 E-value: 2.91e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY-----------GSLEVLKGVDVTAHRGDVVSLIGSSGSGKST----LLRCCNlledsQQGEILFKGE 69
Cdd:PRK15134 273 SPLLDVEQLQVAFpirkgilkrtvDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 70 PVvwkgesHHRrpaDPKQVLRIRTNLSMVFQQFN--LWAHMTILQNVMEApVTVLARDRGSVEKAAR--GYLEKVGIG-D 144
Cdd:PRK15134 348 PL------HNL---NRRQLLPVRHRIQVVFQDPNssLNPRLNVLQIIEEG-LRVHQPTLSAAQREQQviAVMEEVGLDpE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 145 KCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDVSDHVV 223
Cdd:PRK15134 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQlAYLFISHDLHVVRALCHQVI 497
|
250 260
....*....|....*....|....*....
gi 114544175 224 FLHQGLIEEQGPPETLFGAPKSERLRGFL 252
Cdd:PRK15134 498 VLRQGEVVEQGDCERVFAAPQQEYTRQLL 526
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
7-252 |
3.29e-36 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 129.13 E-value: 3.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGeilFKGE-PVVWKGESHHRRPADP 85
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG---FRVEgKVTFHGKNLYAPDVDP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVlriRTNLSMVFQQFNLWAHmTILQNVMEAPvtvlaRDRGS-------VEKAARGYLEKVGIGDKCDVYPAQLSGGQQ 158
Cdd:PRK14243 87 VEV---RRRIGMVFQKPNPFPK-SIYDNIAYGA-----RINGYkgdmdelVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLaGEGRTMIIVTHDMKMAHDVSDHVVFLH---------QGL 229
Cdd:PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNveltegggrYGY 236
|
250 260
....*....|....*....|...
gi 114544175 230 IEEQGPPETLFGAPKSERLRGFL 252
Cdd:PRK14243 237 LVEFDRTEKIFNSPQQQATRDYV 259
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
8-239 |
3.61e-36 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 130.21 E-value: 3.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS-----LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFK------------GEP 70
Cdd:PRK13651 3 IKVKNIVKIFNKklpteLKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIfkdeknkkktkeKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 71 VVWKGESHHRRPADPKQVLRIRTNLSMVFQ--QFNLWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDK-CD 147
Cdd:PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQfaEYQLFEQ-TIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDESyLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 VYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQ 227
Cdd:PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240
|
250
....*....|...
gi 114544175 228 G-LIEEQGPPETL 239
Cdd:PRK13651 241 GkIIKDGDTYDIL 253
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-254 |
6.13e-36 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 128.62 E-value: 6.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDsQQGEILFKGEpVVWKGESHHR 80
Cdd:PRK14258 1 MSKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGR-VEFFNQNIYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPADpkqVLRIRTNLSMVFQQFNLWAhMTILQNVMEAPVTVLARDR----GSVEKAARGYLEKVGIGDKCDVYPAQLSGG 156
Cdd:PRK14258 79 RRVN---LNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKleidDIVESALKDADLWDEIKHKIHKSALDLSGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDVSDHVVFLHQ-----GLI 230
Cdd:PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHNLHQVSRLSDFTAFFKGnenriGQL 234
|
250 260
....*....|....*....|....
gi 114544175 231 EEQGPPETLFGAPKSERLRGFLKS 254
Cdd:PRK14258 235 VEFGLTKKIFNSPHDSRTREYVLS 258
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
27-239 |
1.14e-35 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 127.01 E-value: 1.14e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 27 DVTAHRGDVVSLIGSSGSGKSTLLrccNLLED---SQQGEILFKGEPvvwkgesHHRRPADPKQVlrirtnlSMVFQQFN 103
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLL---NLIAGfltPASGSLTLNGQD-------HTTTPPSRRPV-------SMLFQENN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 104 LWAHMTILQNV---MEAPVTVLARDRGSVEKAARgyleKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPT 180
Cdd:PRK10771 82 LFSHLTVAQNIglgLNPGLKLNAAQREKLHAIAR----QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 181 SALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK10771 158 SALDPALRQEMLTLVSQVCQERQlTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
8-234 |
1.20e-35 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 126.24 E-value: 1.20e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCN--LLEDSqqGEILFKGEPVVWKGESHhrrpadp 85
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILgiILPDS--GEVLFDGKPLDIAARNR------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 kqvlrirtnLSMVFQQFNLWAHMTILQNVMeapvtVLARDRGSVEKAARG----YLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:cd03269 72 ---------IGYLPEERGLYPKMKVIDQLV-----YLAQLKGLKKEEARRrideWLERLELSEYANKRVEELSKGNQQKV 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPeLEQEVVK-VIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03269 138 QFIAAVIHDPELLILDEPFSGLDP-VNVELLKdVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
21-215 |
1.22e-35 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 125.61 E-value: 1.22e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 21 EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWkgeshhrrpaDPKQVLRIRTNLSMVFQ 100
Cdd:TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY----------SRKGLLERRQRVGLVFQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 101 QFN--LWAhMTILQNVMEAPVTV-LARDRgsVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFD 177
Cdd:TIGR01166 76 DPDdqLFA-ADVDQDVAFGPLNLgLSEAE--VERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152
|
170 180 190
....*....|....*....|....*....|....*...
gi 114544175 178 EPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMA 215
Cdd:TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
33-234 |
2.73e-35 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 125.49 E-value: 2.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 33 GDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRRPADPKqvlrirtnLSMVFQQFNLWAHMTILQ 112
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK--------IGLVFQQYALFPHLNVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 113 NVM-EAPVTVLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEV 191
Cdd:cd03297 95 NLAfGLKRKRNREDRISVDEL----LDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 114544175 192 VKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03297 171 LPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-250 |
5.82e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 126.50 E-value: 5.82e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGS-LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGeshhrrp 82
Cdd:PRK13636 2 EDYILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpKQVLRIRTNLSMVFQQ-FNLWAHMTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK13636 75 ---KGLMKLRESVGMVFQDpDNQLFSASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
250
....*....|
gi 114544175 241 GapKSERLRG 250
Cdd:PRK13636 231 A--EKEMLRK 238
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-239 |
5.88e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 126.76 E-value: 5.88e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkGESHHRR----P 82
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL---DPEDRRRigylP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 AD----PKqvlrirtnlsmvfqqfnlwahMTilqnVMEApVTVLAR----DRGSVEKAARGYLEKVGIGDKCDVYPAQLS 154
Cdd:COG4152 78 EErglyPK---------------------MK----VGEQ-LVYLARlkglSKAEAKRRADEWLERLGLGDRANKKVEELS 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPeLEQEVVK-VIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQ 233
Cdd:COG4152 132 KGNQQKVQLIAALLHDPELLILDEPFSGLDP-VNVELLKdVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLS 210
|
....*.
gi 114544175 234 GPPETL 239
Cdd:COG4152 211 GSVDEI 216
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
23-228 |
6.63e-35 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 124.89 E-value: 6.63e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhRRPADPKQVlrirtnlsmVFQQF 102
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI--------TEPGPDRMV---------VFQNY 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 103 NLWAHMTILQNVMEAPVTVLA-RDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTS 181
Cdd:TIGR01184 64 SLLPWLTVRENIALAVDRVLPdLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 114544175 182 ALDP----ELEQEVVKVIKDlagEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:TIGR01184 144 ALDAltrgNLQEELMQIWEE---HRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-244 |
7.39e-35 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 125.98 E-value: 7.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDS-----QQGEILFKGEPVVwkgeshhr 80
Cdd:PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIF-------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpaDPKQVLRIRTNLSMVFQQFNLWAhMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVG----IGDKCDVYPAQLSGG 156
Cdd:PRK14271 92 ---NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGlwdaVKDRLSDSPFRLSGG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246
|
....*...
gi 114544175 237 ETLFGAPK 244
Cdd:PRK14271 247 EQLFSSPK 254
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1-230 |
9.96e-35 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 125.18 E-value: 9.96e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNP------TPVIeIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwk 74
Cdd:PRK11247 1 MMNTarlnqgTPLL-LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 75 geshhrrpadpkqvlRIRTNLSMVFQQFNLWAHMTILQNVMEAPvtvlardRGSVEKAARGYLEKVGIGDKCDVYPAQLS 154
Cdd:PRK11247 78 ---------------EAREDTRLMFQDARLLPWKKVIDNVGLGL-------KGQWRDAALQALAAVGLADRANEWPAALS 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQhGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-240 |
3.33e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 124.33 E-value: 3.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesh 78
Cdd:PRK13632 1 IKNKSVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 79 hrrpaDPKQVLRIRTNLSMVFQ----QF-NLWAHMTI---LQNVMEapvtvlarDRGSVEKAARGYLEKVGIGDKCDVYP 150
Cdd:PRK13632 74 -----SKENLKEIRKKIGIIFQnpdnQFiGATVEDDIafgLENKKV--------PPKKMKDIIDDLAKKVGMEDYLDKEP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEG-RTMIIVTHDMKMAHdVSDHVVFLHQGL 229
Cdd:PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRkKTLISITHDMDEAI-LADKVIVFSEGK 219
|
250
....*....|.
gi 114544175 230 IEEQGPPETLF 240
Cdd:PRK13632 220 LIAQGKPKEIL 230
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
5-255 |
5.14e-34 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 125.08 E-value: 5.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY----------GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwk 74
Cdd:PRK11308 3 QPLLQAIDLKKHYpvkrglfkpeRLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 75 geshhrrPADPKQVLRIRTNLSMVFQqfNLWAHMTILQNV---MEAPV---TVLARDrgsvEKAAR--GYLEKVGI-GDK 145
Cdd:PRK11308 81 -------KADPEAQKLLRQKIQIVFQ--NPYGSLNPRKKVgqiLEEPLlinTSLSAA----ERREKalAMMAKVGLrPEH 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 146 CDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVF 224
Cdd:PRK11308 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADEVMV 227
|
250 260 270
....*....|....*....|....*....|.
gi 114544175 225 LHQGLIEEQGPPETLFGAPKSERLRGFLKST 255
Cdd:PRK11308 228 MYLGRCVEKGTKEQIFNNPRHPYTQALLSAT 258
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
7-243 |
5.91e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 123.76 E-value: 5.91e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpadP 85
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT------------K 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQ-----FNlwahMTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:PRK13652 71 ENIREVRKFVGLVFQNpddqiFS----PTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
....
gi 114544175 240 FGAP 243
Cdd:PRK13652 226 FLQP 229
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
8-239 |
6.70e-34 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 122.26 E-value: 6.70e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS---LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE---DSQQGEILFKGEPVvwkgeshhrr 81
Cdd:cd03249 1 IEFKNVSFRYPSrpdVPILKGLSLTIPPGKTVALVGSSGCGKSTVV---SLLErfyDPTSGEILLDGVDI---------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 padPKQVLR-IRTNLSMVFQQFNLWAhMTILQNVmeapvtVLARDRGS---VEKAAR-------------GYLEKVGigd 144
Cdd:cd03249 68 ---RDLNLRwLRSQIGLVSQEPVLFD-GTIAENI------RYGKPDATdeeVEEAAKkanihdfimslpdGYDTLVG--- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 145 kcdVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIkDLAGEGRTMIIVTHDMKMAHDvSDHVVF 224
Cdd:cd03249 135 ---ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRN-ADLIAV 209
|
250
....*....|....*
gi 114544175 225 LHQGLIEEQGPPETL 239
Cdd:cd03249 210 LQNGQVVEQGTHDEL 224
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
5-225 |
6.74e-34 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 122.16 E-value: 6.74e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY-----GS--LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC--NLLEDSqqGEILFKgepvvwkg 75
Cdd:COG4778 2 TTLLEVENLSKTFtlhlqGGkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIygNYLPDS--GSILVR-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 76 esHHRRP-----ADPKQVLRIR-TNLSMVFQQFNLWAHMTILQNVMEaPVTVLARDRGSVEKAARGYLEKVGIGDKC-DV 148
Cdd:COG4778 72 --HDGGWvdlaqASPREILALRrRTIGYVSQFLRVIPRVSALDVVAE-PLLERGVDREEARARARELLARLNLPERLwDL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 149 YPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFL 225
Cdd:COG4778 149 PPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDV 225
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
8-239 |
1.40e-33 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 120.94 E-value: 1.40e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhRRPADpkq 87
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV-------REPRE--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrIRTNLSMVFQQFNLWAHMTILQNV-MEAPVTVLARDRGSvEKAARgYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:cd03265 71 ---VRRRIGIVFQDLSVDDELTGWENLyIHARLYGVPGAERR-ERIDE-LLDFVGLLEAADRLVKTYSGGMRRRLEIARS 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-250 |
1.51e-33 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 125.34 E-value: 1.51e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgESHHRRPADp 85
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV----EALSARAAS- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQqFNLWA--------HMTILQNVMEApvtvlarDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQ 157
Cdd:PRK09536 77 RRVASVPQDTSLSFE-FDVRQvvemgrtpHRSRFDTWTET-------DRAAVERA----MERTGVAQFADRPVTSLSGGE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224
|
250
....*....|...
gi 114544175 238 TLFGAPkseRLRG 250
Cdd:PRK09536 225 DVLTAD---TLRA 234
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
6-253 |
1.69e-33 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 122.43 E-value: 1.69e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgeshhrRPA 83
Cdd:PRK13635 4 EIIRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG------------MVL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLRIRTNLSMVFQ----QFnlwAHMTI-------LQNVMEAPVTVLARdrgsVEKAargyLEKVGIGDKCDVYPAQ 152
Cdd:PRK13635 72 SEETVWDVRRQVGMVFQnpdnQF---VGATVqddvafgLENIGVPREEMVER----VDQA----LRQVGMEDFLNREPHR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDvSDHVVFLHQGLIE 231
Cdd:PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGiTVLSITHDLDEAAQ-ADRVIVMNKGEIL 219
|
250 260 270
....*....|....*....|....*....|...
gi 114544175 232 EQGPPETLF-----------GAPKSERLRGFLK 253
Cdd:PRK13635 220 EEGTPEEIFksghmlqeiglDVPFSVKLKELLK 252
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
7-228 |
2.92e-33 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 120.36 E-value: 2.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgesHHRRPADP 85
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG---------HDITRLKN 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:PRK10908 72 REVPFLRRQIGMIFQDHHLLMDRTVYDNV-AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
23-243 |
6.58e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 121.28 E-value: 6.58e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFkGEPVVWKGEshhrrpaDPKQVLRIRTNLSMVFQ-- 100
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGK-------KNKKLKPLRKKVGIVFQfp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 101 QFNLWAHmTILQNVMEAPVTVLARDRgSVEKAARGYLEKVGIGDKC-DVYPAQLSGGQQQRAAIARALCMEPEALLFDEP 179
Cdd:PRK13634 95 EHQLFEE-TVEKDICFGPMNFGVSEE-DAKQKAREMIELVGLPEELlARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 180 TSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:PRK13634 173 TAGLDPKGRKEMMEMFYKLHKEkGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
15-239 |
8.93e-33 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 121.34 E-value: 8.93e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 15 KAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR--CCNLLEDSQQGEILfkGEPVVwkgeshhrrpADPKQVlriR 92
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRmlTTLLRPTSGTARVA--GYDVV----------REPRKV---R 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 93 TNLSMVFQQFNLWAHMTILQN-VMEAPVTVLARDRgsVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEP 171
Cdd:TIGR01188 66 RSIGIVPQYASVDEDLTGRENlEMMGRLYGLPKDE--AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQP 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 172 EALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:TIGR01188 144 DVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
3-222 |
1.74e-32 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 118.76 E-value: 1.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAY--GSL--EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesh 78
Cdd:PRK11629 1 MNKILLQCDNLCKRYqeGSVqtDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 79 HRRPADPKQVLRIRtNLSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQ 158
Cdd:PRK11629 74 SKLSSAAKAELRNQ-KLGFIYQFHHLLPDFTALENV-AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGER 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDpeleQEVVKVIKDLAGE-----GRTMIIVTHDMKMAHDVSDHV 222
Cdd:PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLD----ARNADSIFQLLGElnrlqGTAFLVVTHDLQLAKRMSRQL 216
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
8-234 |
1.74e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 118.06 E-value: 1.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGdVVSLIGSSGSGKSTLLR-CCNLLEDSQqGEILFKGEPVvwkgeshhrrpadPK 86
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRiLATLTPPSS-GTIRIDGQDV-------------LK 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWAHMTIlqnvmEAPVTVLARDRG----SVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTV-----REFLDYIAWLKGipskEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVG 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLaGEGRTMIIVTHDMKmahDVSDH---VVFLHQGLIEEQG 234
Cdd:cd03264 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL-GEDRIVILSTHIVE---DVESLcnqVAVLNKGKLVFEG 211
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
7-252 |
1.76e-32 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 119.03 E-value: 1.76e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLhKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKStlLRCCNLLE------DSQQGEILFKGEPVVwkgeshhr 80
Cdd:PRK10418 4 QIELRNI-ALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGilpagvRQTAGRVLLDGKPVA-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rPADpkqvLRIRTNlsmvfqqfnlwahMTILQNVMEA--PV---------TVLARDRGSVEKAARGYLEKVGIGDKCDV- 148
Cdd:PRK10418 73 -PCA----LRGRKI-------------ATIMQNPRSAfnPLhtmhthareTCLALGKPADDATLTAALEAVGLENAARVl 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 149 --YPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFL 225
Cdd:PRK10418 135 klYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKrALGMLLVTHDMGVVARLADDVAVM 214
|
250 260
....*....|....*....|....*..
gi 114544175 226 HQGLIEEQGPPETLFGAPKSERLRGFL 252
Cdd:PRK10418 215 SHGRIVEQGDVETLFNAPKHAVTRSLV 241
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
9-252 |
2.27e-32 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 118.40 E-value: 2.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshHRRPADpkqv 88
Cdd:TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT------KLPPHE---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 89 lRIRTNLSMVFQQFNLWAHMTILQNVMeapvTVL-ARDRGSVEKAARGYlekvgigdkcDVYPA----------QLSGGQ 157
Cdd:TIGR03410 72 -RARAGIAYVPQGREIFPRLTVEENLL----TGLaALPRRSRKIPDEIY----------ELFPVlkemlgrrggDLSGGQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:TIGR03410 137 QQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGmAILLVEQYLDFARELADRYYVMERGRVVASGAG 216
|
250
....*....|....*.
gi 114544175 237 ETLfgapKSERLRGFL 252
Cdd:TIGR03410 217 DEL----DEDKVRRYL 228
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
12-235 |
2.72e-32 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 119.02 E-value: 2.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 12 NLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRrpadpkqvlRI 91
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRK---------AF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 92 RTNLSMVFQQ----FNlwAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGDK-CDVYPAQLSGGQQQRAAIARA 166
Cdd:PRK10419 88 RRDIQMVFQDsisaVN--PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSvLDKRPPQLSGGQLQRVCLARA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRT-MIIVTHDMKMAHDVSDHVVFLHQGLIEEQGP 235
Cdd:PRK10419 166 LAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTaCLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
8-237 |
3.84e-32 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 118.19 E-value: 3.84e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvWKgeshhrrpADPKQ 87
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI-SM--------LSSRQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRirtNLSMVFQQ--------------------FNLWAHMTilqnvmeapvtvlARDRGSVEKAargyLEKVGIGDKCD 147
Cdd:PRK11231 74 LAR---RLALLPQHhltpegitvrelvaygrspwLSLWGRLS-------------AEDNARVNQA----MEQTRINHLAD 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 VYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQ 227
Cdd:PRK11231 134 RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLAN 213
|
250
....*....|
gi 114544175 228 GLIEEQGPPE 237
Cdd:PRK11231 214 GHVMAQGTPE 223
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
9-211 |
3.97e-32 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 117.20 E-value: 3.97e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR--CCNLLED-SQQGEILFKGEPVvwkgeshHRRPADP 85
Cdd:COG4136 3 SLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAaiAGTLSPAfSASGEVLLNGRRL-------TALPAEQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVlrirtnlSMVFQQFNLWAHMTILQNVMEA-PVTVLARDRGSVEKAArgyLEKVGIGDKCDVYPAQLSGGQQQRAAIA 164
Cdd:COG4136 76 RRI-------GILFQDDLLFPHLSVGENLAFAlPPTIGRAQRRARVEQA---LEEAGLAGFADRDPATLSGGQRARVALL 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 114544175 165 RALCMEPEALLFDEPTSALDPELEQE----VVKVIKDLAGegrTMIIVTHD 211
Cdd:COG4136 146 RALLAEPRALLLDEPFSKLDAALRAQfrefVFEQIRQRGI---PALLVTHD 193
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
5-237 |
4.21e-32 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 118.17 E-value: 4.21e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHrrpad 84
Cdd:PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI--EGLPGH----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkQVLR---IRTnlsmvFQQFNLWAHMTILQNVMEAP-----VTVLA----------RDRGSVEKAARgYLEKVGIGDKC 146
Cdd:PRK11300 76 --QIARmgvVRT-----FQHVRLFREMTVIENLLVAQhqqlkTGLFSgllktpafrrAESEALDRAAT-WLERVGLLEHA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 147 DVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFL 225
Cdd:PRK11300 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVV 227
|
250
....*....|..
gi 114544175 226 HQGLIEEQGPPE 237
Cdd:PRK11300 228 NQGTPLANGTPE 239
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
8-240 |
7.22e-32 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 116.94 E-value: 7.22e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE-VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHRrpadpk 86
Cdd:cd03254 3 IEFENVNFSYDEKKpVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI--RDISRKS------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvlrIRTNLSMVFQQFNLWAHmTILQN------------VMEAPVTVLARDrgSVEKAARGYLEKVGIGDKcdvypaQLS 154
Cdd:cd03254 75 ----LRSMIGVVLQDTFLFSG-TIMENirlgrpnatdeeVIEAAKEAGAHD--FIMKLPNGYDTVLGENGG------NLS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQG 234
Cdd:cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEG 219
|
....*.
gi 114544175 235 PPETLF 240
Cdd:cd03254 220 THDELL 225
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-254 |
7.54e-32 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 122.51 E-value: 7.54e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY---GSL-EVLKGVDVTAHRGDVVSLIGSSGSGKS-TLLRCCNLLEDSQ----QGEILFKGEPVVwkg 75
Cdd:PRK15134 3 QPLLAIENLSVAFrqqQTVrTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPvvypSGDIRFHGESLL--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 76 eshHrrpADPKQVLRIRTN-LSMVFQQfnLWAHMTILQNVMEAPVTVLARDRGSVEKAARGY----LEKVGI---GDKCD 147
Cdd:PRK15134 80 ---H---ASEQTLRGVRGNkIAMIFQE--PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEilncLDRVGIrqaAKRLT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 VYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLH 226
Cdd:PRK15134 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVMQ 231
|
250 260
....*....|....*....|....*...
gi 114544175 227 QGLIEEQGPPETLFGAPKSERLRGFLKS 254
Cdd:PRK15134 232 NGRCVEQNRAATLFSAPTHPYTQKLLNS 259
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
7-239 |
9.91e-32 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 117.91 E-value: 9.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpaDP 85
Cdd:PRK13647 4 IIEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV------------NA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFN--LWAhMTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAI 163
Cdd:PRK13647 72 ENEKWVRSKVGLVFQDPDdqVFS-STVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAI 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 164 ARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
26-243 |
1.65e-31 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 119.06 E-value: 1.65e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 26 VDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvVWKGES-------HHRRpadpkqvlrirtnLSMV 98
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR--TLFDSRkgiflppEKRR-------------IGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 99 FQQFNLWAHMTILQNVMEAPVTVLARDRGSVEKAArgyLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDE 178
Cdd:TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERV---IELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 179 PTSALDPELEQEVVKVIKDLAGEGRT-MIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIpILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
33-244 |
1.91e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 117.24 E-value: 1.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 33 GDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGEShhrrpadpKQVLRIRTNLSMVFQ--QFNLWAHmTI 110
Cdd:PRK13641 33 GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN--------KNLKKLRKKVSLVFQfpEAQLFEN-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 111 LQNVMEAPVTVLARDRGSVEKAARgYLEKVGIGDK-CDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQ 189
Cdd:PRK13641 104 LKDVEFGPKNFGFSEDEAKEKALK-WLKKVGLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 190 EVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPK 244
Cdd:PRK13641 183 EMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
4-225 |
2.25e-31 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 121.24 E-value: 2.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvWKGESHHRRp 82
Cdd:TIGR02857 318 PASSLEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL-ADADADSWR- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpKQVLRIRTNLSMVFQqfnlwahmTILQNVM----EAPVTVLARdrgSVEKAARGYLEKV---GIGDKCDVYPAQLSG 155
Cdd:TIGR02857 396 ---DQIAWVPQHPFLFAG--------TIAENIRlarpDASDAEIRE---ALERAGLDEFVAAlpqGLDTPIGEGGAGLSG 461
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVsDHVVFL 225
Cdd:TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRLALAALA-DRIVVL 529
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-240 |
2.68e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 116.39 E-value: 2.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesh 78
Cdd:PRK13648 1 MEDKNSIIVFKNVSFQYQSDAsfTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 79 hrrpaDPKQVLRIRTNLSMVFQQ---------------FNLWAHMTILQNVMEApvtvlardrgsVEKAargyLEKVGIG 143
Cdd:PRK13648 74 -----TDDNFEKLRKHIGIVFQNpdnqfvgsivkydvaFGLENHAVPYDEMHRR-----------VSEA----LKQVDML 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 144 DKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMII-VTHDMKMAHDvSDHV 222
Cdd:PRK13648 134 ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIsITHDLSEAME-ADHV 212
|
250
....*....|....*...
gi 114544175 223 VFLHQGLIEEQGPPETLF 240
Cdd:PRK13648 213 IVMNKGTVYKEGTPTEIF 230
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
23-253 |
4.67e-31 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 118.60 E-value: 4.67e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRRPAdpkqvlriRTNLSMVFQQF 102
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR--------RKKIAMVFQSF 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 103 NLWAHMTILQNV---MEApVTVLARDRgsvEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEP 179
Cdd:PRK10070 116 ALMPHMTVLDNTafgMEL-AGINAEER---REKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEA 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 180 TSALDP----ELEQEVVKVikdLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSERLRGFLK 253
Cdd:PRK10070 192 FSALDPlirtEMQDELVKL---QAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
3-252 |
5.99e-31 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 115.63 E-value: 5.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC--NLLEDSqqGEILFKGEPVvwkgeshhr 80
Cdd:PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIggQIAPDH--GEILFDGENI--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rPADPKQVL-RIRTNLSMVFQQFNLWAHMTILQNV---------MEAPV---TVLARdrgsvekaargyLEKVGIGDKCD 147
Cdd:PRK11831 72 -PAMSRSRLyTVRKRMSMLFQSGALFTDMNVFDNVayplrehtqLPAPLlhsTVMMK------------LEAVGLRGAAK 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 VYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAHDVSDHVVFLH 226
Cdd:PRK11831 139 LMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELnSALGVTCVVVSHDVPEVLSIADHAYIVA 218
|
250 260
....*....|....*....|....*.
gi 114544175 227 QGLIEEQGPPETLFGAPkSERLRGFL 252
Cdd:PRK11831 219 DKKIVAHGSAQALQANP-DPRVRQFL 243
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
8-240 |
6.07e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 115.92 E-value: 6.07e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY--GS---LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrp 82
Cdd:PRK13637 3 IKIENLTHIYmeGTpfeKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI----------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVLR-IRTNLSMVFQ--QFNLWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIG--DKCDVYPAQLSGGQ 157
Cdd:PRK13637 72 TDKKVKLSdIRKKVGLVFQypEYQLFEE-TIEKDIAFGPIN-LGLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
....
gi 114544175 237 ETLF 240
Cdd:PRK13637 230 REVF 233
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
7-241 |
6.99e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 115.60 E-value: 6.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLE---VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpa 83
Cdd:PRK13650 4 IIEVKNLTFKYKEDQekyTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLT----------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dPKQVLRIRTNLSMVFQQ-FNLWAHMTILQNV---MEAPVTVLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQ 159
Cdd:PRK13650 73 -EENVWDIRHKIGMVFQNpDNQFVGATVEDDVafgLENKGIPHEEMKERVNEA----LELVGMQDFKEREPARLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDM-KMAhdVSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLdEVA--LSDRVLVMKNGQVESTSTPR 225
|
....
gi 114544175 238 TLFG 241
Cdd:PRK13650 226 ELFS 229
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
8-232 |
7.40e-31 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 113.47 E-value: 7.40e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpaDPKQ 87
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ-----------KNIE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRirtNLSMVFQQFNLWAHMTILQNVMeapvtVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:cd03268 70 ALR---RIGALIEAPGFYPNLTARENLR-----LLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG-LIEE 232
Cdd:cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGkLIEE 207
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
7-228 |
8.04e-31 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 115.11 E-value: 8.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLL---EDSQQGEILFKGEPVVWKGeshhrRPA 83
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgDKSAGSHIELLGRTVQREG-----RLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpKQVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPV-------TVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGG 156
Cdd:PRK09984 79 --RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALgstpfwrTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYALRYCERIVALRQG 229
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
26-255 |
1.63e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 114.83 E-value: 1.63e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 26 VDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFkGEPVVwkgeshhRRPADPKQVLRIRTNLSMVFQ--QFN 103
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVV-------SSTSKQKEIKPVRKKVGVVFQfpESQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 104 LWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDK-CDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSA 182
Cdd:PRK13643 97 LFEE-TVLKDVAFGPQN-FGIPKEKAEKIAAEKLEMVGLADEfWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 183 LDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF-----------GAPKSERLRGF 251
Cdd:PRK13643 175 LDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFqevdflkahelGVPKATHFADQ 254
|
....
gi 114544175 252 LKST 255
Cdd:PRK13643 255 LQKT 258
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
19-244 |
4.09e-30 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 114.80 E-value: 4.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 19 SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEilfkgepVVWKGEshHRRPADPKQVLRIRTNLSMV 98
Cdd:PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGE-------VAWLGK--DLLGMKDDEWRAVRSDIQMI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 99 FQQ--FNLWAHMTILQNVMEAPVTVLAR-DRGSVEKAARGYLEKVGI-GDKCDVYPAQLSGGQQQRAAIARALCMEPEAL 174
Cdd:PRK15079 104 FQDplASLNPRMTIGEIIAEPLRTYHPKlSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLI 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 175 LFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPK 244
Cdd:PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREmGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPL 254
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
6-234 |
4.82e-30 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 113.00 E-value: 4.82e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPvvwKGESHHRRPADP 85
Cdd:TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS---GAELELYQLSEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQ--NVMEAPVTVLARDRGSVEKAARGYLEKVGIG-DKCDVYPAQLSGGQQQRAA 162
Cdd:TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAgaNIGERLMAIGARHYGNIRATAQDWLEEVEIDpTRIDDLPRAFSGGMQQRLQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDlGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
8-234 |
5.08e-30 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 110.48 E-value: 5.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnLLE---DSQQGEILFKGEPVVWKGEShhrrp 82
Cdd:cd03247 1 LSINNVSFSYPEQEqqVLKNLSLELKQGEKIALLGRSGSGKSTLLQ---LLTgdlKPQQGEITLDGVPVSDLEKA----- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpkqvlrIRTNLSMVFQQFNLWAhMTILQNVMEapvtvlardrgsvekaargylekvgigdkcdvypaQLSGGQQQRAA 162
Cdd:cd03247 73 --------LSSLISVLNQRPYLFD-TTLRNNLGR-----------------------------------RFSGGERQRLA 108
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVsDHVVFLHQGLIEEQG 234
Cdd:cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-230 |
7.05e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 112.49 E-value: 7.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS---LE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC--NLLEDSqqGEILFKGEPVVwkGESHHR 80
Cdd:COG1101 2 LELKNLSKTFNPgtvNEkrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIagSLPPDS--GSILIDGKDVT--KLPEYK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPADpkqvlrirtnLSMVFQ--QFNLWAHMTILQNVMeapvtvLARDRG-------SVEKAARGY----LEKVGIG--DK 145
Cdd:COG1101 78 RAKY----------IGRVFQdpMMGTAPSMTIEENLA------LAYRRGkrrglrrGLTKKRRELfrelLATLGLGleNR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 146 CDVYPAQLSGGQQQraaiARALCM----EPEALLFDEPTSALDP-------ELEQEVVKvikdlaGEGRTMIIVTHDMKM 214
Cdd:COG1101 142 LDTKVGLLSGGQRQ----ALSLLMatltKPKLLLLDEHTAALDPktaalvlELTEKIVE------ENNLTTLMVTHNMEQ 211
|
250
....*....|....*.
gi 114544175 215 AHDVSDHVVFLHQGLI 230
Cdd:COG1101 212 ALDYGNRLIMMHEGRI 227
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
17-240 |
8.32e-30 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 112.79 E-value: 8.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 17 YGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKgeshhrrpadPKQVLRIRTNLS 96
Cdd:PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS----------KRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 97 MVFQQfnlwAHMTILQNVMEAPVTVLARDRGSVE-KAARGYLEKVGIGDKCDV--YPAQ-LSGGQQQRAAIARALCMEPE 172
Cdd:PRK13638 81 TVFQD----PEQQIFYTDIDSDIAFSLRNLGVPEaEITRRVDEALTLVDAQHFrhQPIQcLSHGQKKRVAIAGALVLQAR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 173 ALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
8-239 |
9.37e-30 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 116.44 E-value: 9.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ--QGEIL----------------FKGE 69
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEptSGRIIyhvalcekcgyverpsKVGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 70 PVVWKGESHHRRPAD-----PKQVLRIRTNLSMVFQQ-FNLWAHMTILQNVMEAPVTVLARDRGSVEKAARgYLEKVGIG 143
Cdd:TIGR03269 81 PCPVCGGTLEPEEVDfwnlsDKLRRRIRKRIAIMLQRtFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD-LIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 144 DKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLA-GEGRTMIIVTHDMKMAHDVSDHV 222
Cdd:TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVkASGISMVLTSHWPEVIEDLSDKA 239
|
250
....*....|....*..
gi 114544175 223 VFLHQGLIEEQGPPETL 239
Cdd:TIGR03269 240 IWLENGEIKEEGTPDEV 256
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
8-234 |
1.29e-29 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 110.54 E-value: 1.29e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpA 83
Cdd:cd03266 2 ITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV----------K 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLRirtNLSMVFQQFNLWAHMTILQNVMeapvtVLARDRGSVEKAARGYLEKV----GIGDKCDVYPAQLSGGQQQ 159
Cdd:cd03266 72 EPAEARR---RLGFVSDSTGLYDRLTARENLE-----YFAGLYGLKGDELTARLEELadrlGMEELLDRRVGGFSTGMRQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
2-234 |
1.89e-29 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 111.17 E-value: 1.89e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWK-----GE 76
Cdd:PRK11701 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRdlyalSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 77 SHHRRPAdpkqvlriRTNLSMVFQQFNLWAHMTILQ--NVMEAPVTVLARDRGSVEKAARGYLEKVGIG-DKCDVYPAQL 153
Cdd:PRK11701 81 AERRRLL--------RTEWGFVHQHPRDGLRMQVSAggNIGERLMAVGARHYGDIRATAGDWLERVEIDaARIDDLPTTF 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 154 SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEE 232
Cdd:PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
..
gi 114544175 233 QG 234
Cdd:PRK11701 233 SG 234
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
16-225 |
2.51e-29 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 109.25 E-value: 2.51e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 16 AYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgeshHRRPA--------DPKQ 87
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG----------GARVAyvpqrsevPDSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSM-VFQQFNLWAHMTilqnvmeapvtvlARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:NF040873 71 PLTVRDLVAMgRWARRGLWRRLT-------------RDDRAAVDDA----LERVGLADLAGRQLGELSGGQRQRALLAQG 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMkmaHDVS--DHVVFL 225
Cdd:NF040873 134 LAQEADLLLLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDL---ELVRraDPCVLL 191
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
7-240 |
2.87e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 111.33 E-value: 2.87e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLE------VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhr 80
Cdd:PRK13633 4 MIKCKNVSYKYESNEesteklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT--------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpADPKQVLRIRTNLSMVFQQFNLWAHMTILQ-NVMEAP--VTVLARD-RGSVEKAargyLEKVGIGDKCDVYPAQLSGG 156
Cdd:PRK13633 75 --SDEENLWDIRNKAGMVFQNPDNQIVATIVEeDVAFGPenLGIPPEEiRERVDES----LKKVGMYEYRRHAPHLLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGP 235
Cdd:PRK13633 149 QKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGT 227
|
....*
gi 114544175 236 PETLF 240
Cdd:PRK13633 228 PKEIF 232
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
23-248 |
9.81e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 110.08 E-value: 9.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpADPKQVLRIRTNLSMVFQ-- 100
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDT-----------GDFSKLQGIRKLVGIVFQnp 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 101 --QFnlwAHMTILQNVMEAPVTVL---ARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALL 175
Cdd:PRK13644 87 etQF---VGRTVEEDLAFGPENLClppIEIRKRVDRA----LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 176 FDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGPPETLFGAPKSERL 248
Cdd:PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-239 |
1.74e-28 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 113.66 E-value: 1.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAYGS---LEVLKGVDVTAHRGDVVSLIGSSGSGKSTllrCCNLLEDSQQ---GEILFKGEPVVwkg 75
Cdd:TIGR00958 473 LNLEGLIEFQDVSFSYPNrpdVPVLKGLTFTLHPGEVVALVGPSGSGKST---VAALLQNLYQptgGQVLLDGVPLV--- 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 76 ESHHRRpadpkqvlrIRTNLSMVFQQFNLWAHmTILQNVM-------EAPVTVLARDRGS---VEKAARGYLEKVGigdk 145
Cdd:TIGR00958 547 QYDHHY---------LHRQVALVGQEPVLFSG-SVRENIAygltdtpDEEIMAAAKAANAhdfIMEFPNGYDTEVG---- 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 146 cdVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVkviKDLAGEGRTMIIVTHDMKMAHDvSDHVVFL 225
Cdd:TIGR00958 613 --EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ---ESRSRASRTVLLIAHRLSTVER-ADQILVL 686
|
250
....*....|....
gi 114544175 226 HQGLIEEQGPPETL 239
Cdd:TIGR00958 687 KKGSVVEMGTHKQL 700
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-241 |
1.99e-28 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 112.97 E-value: 1.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLE--VLKGVD---VTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFK-GEPVVwkgeshh 79
Cdd:TIGR03269 278 PIIKVRNVSKRYISVDrgVVKAVDnvsLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWV------- 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 80 rRPADPKQVLRIRTN--LSMVFQQFNLWAHMTILQNVMEA-----PVTvLARDRGSVEKAARGYLEK--VGIGDKcdvYP 150
Cdd:TIGR03269 351 -DMTKPGPDGRGRAKryIGILHQEYDLYPHRTVLDNLTEAiglelPDE-LARMKAVITLKMVGFDEEkaEEILDK---YP 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGL 229
Cdd:TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGK 505
|
250
....*....|..
gi 114544175 230 IEEQGPPETLFG 241
Cdd:TIGR03269 506 IVKIGDPEEIVE 517
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
23-240 |
2.82e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 108.68 E-value: 2.82e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGEShhrrpadpKQVLRIRTNLSMVFQ-- 100
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKN--------KDIKQIRKKVGLVFQfp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 101 QFNLWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIGDKC-DVYPAQLSGGQQQRAAIARALCMEPEALLFDEP 179
Cdd:PRK13649 95 ESQLFEE-TVLKDVAFGPQN-FGVSQEEAEALAREKLALVGISESLfEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 180 TSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:PRK13649 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
8-242 |
4.40e-28 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 106.93 E-value: 4.40e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLlrcCNLLE---DSQQGEILFKGEPVvwkgeshhrRP 82
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTL---VNLIPrfyDVDSGRILIDGHDV---------RD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQvlrIRTNLSMVFQQFNLWaHMTILQNVMEApvtVLARDRGSVEKAAR-------------GYLEKvgIGDKcdvy 149
Cdd:cd03251 69 YTLAS---LRRQIGLVSQDVFLF-NDTVAENIAYG---RPGATREEVEEAARaanahefimelpeGYDTV--IGER---- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 PAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGL 229
Cdd:cd03251 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGK 213
|
250
....*....|...
gi 114544175 230 IEEQGPPETLFGA 242
Cdd:cd03251 214 IVERGTHEELLAQ 226
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-211 |
4.77e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 107.64 E-value: 4.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYG----SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHRr 81
Cdd:COG4525 2 SMLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPV--TGPGADR- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 padpkqvlrirtnlSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:COG4525 79 --------------GVVFQKDALLPWLNVLDNV-AFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRV 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 114544175 162 AIARALCMEPEALLFDEPTSALDP---ELEQE-VVKVIKDlagEGRTMIIVTHD 211
Cdd:COG4525 144 GIARALAADPRFLLMDEPFGALDAltrEQMQElLLDVWQR---TGKGVFLITHS 194
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
7-230 |
5.03e-28 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 106.79 E-value: 5.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGS---LEVLKGVDVTAHRGDVVSLIGSSGSGKSTllrCCNLLED---SQQGEILFKGEPV-VWKGESHH 79
Cdd:cd03248 11 IVKFQNVTFAYPTrpdTLVLQDVSFTLHPGEVTALVGPSGSGKST---VVALLENfyqPQGGQVLLDGKPIsQYEHKYLH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 80 RRPADPKQ--VL---RIRTNLSMVFQQFNLwahmtilQNVMEAPVTVLARDrgSVEKAARGYLEKVGIGDkcdvypAQLS 154
Cdd:cd03248 88 SKVSLVGQepVLfarSLQDNIAYGLQSCSF-------ECVKEAAQKAHAHS--FISELASGYDTEVGEKG------SQLS 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTHDMKMAHDvSDHVVFLHQGLI 230
Cdd:cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-239 |
9.90e-28 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 111.07 E-value: 9.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE---DSQQGEILFKGEPVVWKGE 76
Cdd:PRK11160 333 AADQVSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL---QLLTrawDPQQGEILLNGQPIADYSE 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 77 ShhrrpadpkqvlRIRTNLSMVFQQFNLWAHmTILQNVmeapvtVLARDRGSVEKAArGYLEKVGIGDKCDVYPA----- 151
Cdd:PRK11160 410 A------------ALRQAISVVSQRVHLFSA-TLRDNL------LLAAPNASDEALI-EVLQQVGLEKLLEDDKGlnawl 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 -----QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMK-MAHdvSDHVVFL 225
Cdd:PRK11160 470 geggrQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTgLEQ--FDRICVM 546
|
250
....*....|....
gi 114544175 226 HQGLIEEQGPPETL 239
Cdd:PRK11160 547 DNGQIIEQGTHQEL 560
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
7-249 |
2.11e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 106.42 E-value: 2.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCN---LLEDSQQGEILFKGEPVvwkgeshhrr 81
Cdd:PRK13640 5 IVEFKHVSFTYPDSKkpALNDISFSIPRGSWTALIGHNGSGKSTISKLINgllLPDDNPNSKITVDGITL---------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 paDPKQVLRIRTNLSMVFQQ-FNLWAHMTILQNV---MEAPvtvlARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQ 157
Cdd:PRK13640 75 --TAKTVWDIREKVGIVFQNpDNQFVGATVGDDVafgLENR----AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAhDVSDHVVFLHQGLIEEQGPP 236
Cdd:PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKnNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSP 227
|
250
....*....|...
gi 114544175 237 ETLFgaPKSERLR 249
Cdd:PRK13640 228 VEIF--SKVEMLK 238
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
8-242 |
2.65e-27 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 109.81 E-value: 2.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG--SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE---DSQQGEILFKGEPVvwkgesHHRRP 82
Cdd:TIGR02203 331 VEFRNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLV---NLIPrfyEPDSGQILLDGHDL------ADYTL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADpkqvlrIRTNLSMVFQQFNLWAHmTILQNV-MEAPVTVlarDRGSVEKAAR-GYLEKV------GIGDKCDVYPAQLS 154
Cdd:TIGR02203 402 AS------LRRQVALVSQDVVLFND-TIANNIaYGRTEQA---DRAEIERALAaAYAQDFvdklplGLDTPIGENGVLLS 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQG 234
Cdd:TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERG 549
|
....*...
gi 114544175 235 PPETLFGA 242
Cdd:TIGR02203 550 THNELLAR 557
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
20-240 |
2.86e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 106.25 E-value: 2.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 20 LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFkgepvvwkgeSHHRRPAD---PKQVLRIRTNLS 96
Cdd:PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV----------GDYAIPANlkkIKEVKRLRKEIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 97 MVFQ--QFNLWAHmTILQNVMEAPVTvLARDRGSVEKAARGYLEKVGIG-DKCDVYPAQLSGGQQQRAAIARALCMEPEA 173
Cdd:PRK13645 94 LVFQfpEYQLFQE-TIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPeDYVKRSPFELSGGQKRRVALAGIIAMDGNT 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 174 LLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:PRK13645 172 LVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-211 |
3.32e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 109.37 E-value: 3.32e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRRpad 84
Cdd:TIGR02868 333 PTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRR--- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlRIrtnlSMVFQQFNLWAhMTILQNVMeapvtvLARDRGSVEKAARGyLEKVGIGDKCDVYP-----------AQL 153
Cdd:TIGR02868 410 -----RV----SVCAQDAHLFD-TTVRENLR------LARPDATDEELWAA-LERVGLADWLRALPdgldtvlgeggARL 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 154 SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTHD 211
Cdd:TIGR02868 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHH 529
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-239 |
3.96e-27 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 106.43 E-value: 3.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrr 81
Cdd:PRK13537 2 PMSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV---------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 padPKQVLRIRTNLSMVFQQFNLWAHMTILQNVMeapvtVLARDRGSVEKAAR----GYLEKVGIGDKCDVYPAQLSGGQ 157
Cdd:PRK13537 72 ---PSRARHARQRVGVVPQFDNLDPDFTVRENLL-----VFGRYFGLSAAAARalvpPLLEFAKLENKADAKVGELSGGM 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223
|
..
gi 114544175 238 TL 239
Cdd:PRK13537 224 AL 225
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
5-240 |
5.63e-27 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 104.40 E-value: 5.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNlledsqqGEiLFK--GEPVVWKGEshhRRP 82
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLIT-------GD-LPPtyGNDVRLFGE---RRG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPkqVLRIRTNLSMV----FQQFNlwAHMTILQ-------NVMEAPVTVLARDRgsveKAARGYLEKVGIGDKCDVYPA 151
Cdd:COG1119 70 GED--VWELRKRIGLVspalQLRFP--RDETVLDvvlsgffDSIGLYREPTDEQR----ERARELLELLGLAHLADRPFG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEG-RTMIIVTHDmkmAHDVSD---HVVFLHQ 227
Cdd:COG1119 142 TLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHH---VEEIPPgitHVLLLKD 218
|
250
....*....|...
gi 114544175 228 GLIEEQGPPETLF 240
Cdd:COG1119 219 GRVVAAGPKEEVL 231
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-241 |
8.77e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 104.86 E-value: 8.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 21 EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRRPadpkqvlrIRTNLSMVFQ 100
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP--------VRKRIGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 101 qfnlWAHMTILQNVMEAPVTVLARDRG-SVEKA-ARGYLEKVGIGDKCDVY---PAQLSGGQQQRAAIARALCMEPEALL 175
Cdd:PRK13646 93 ----FPESQLFEDTVEREIIFGPKNFKmNLDEVkNYAHRLLMDLGFSRDVMsqsPFQMSGGQMRKIAIVSILAMNPDIIV 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 176 FDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFG 241
Cdd:PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDeNKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
8-240 |
2.59e-26 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 102.24 E-value: 2.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeSH---HRRPad 84
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI-----TKlpmHKRA-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlriRTNLSMVFQQFNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIA 164
Cdd:cd03218 74 -------RLGIGYLPQEASIFRKLTVEENIL-AVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 165 RALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLF 240
Cdd:cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
8-247 |
4.06e-26 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 106.87 E-value: 4.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvvwkgESHHRRPADp 85
Cdd:TIGR03375 464 IEFRNVSFAYpgQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV------DIRQIDPAD- 536
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 kqvlrIRTNLSMVFQQFNLWaHMTILQN-VMEAPvtvLARDRgSVEKAArgylEKVGIGDKCDVYP-----------AQL 153
Cdd:TIGR03375 537 -----LRRNIGYVPQDPRLF-YGTLRDNiALGAP---YADDE-EILRAA----ELAGVTEFVRRHPdgldmqigergRSL 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 154 SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAhDVSDHVVFLHQGLIEEQ 233
Cdd:TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVAD 680
|
250
....*....|....
gi 114544175 234 GPPETLFGAPKSER 247
Cdd:TIGR03375 681 GPKDQVLEALRKGR 694
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
15-234 |
5.39e-26 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 101.58 E-value: 5.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 15 KAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC--CNLLEDSQ-QGEILFKGEPVvwkgeshhrrpaDPKQVLRi 91
Cdd:cd03234 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAisGRVEGGGTtSGQILFNGQPR------------KPDQFQK- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 92 rtNLSMVFQQFNLWAHMTILQNVMEAPVTVLAR---DRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALC 168
Cdd:cd03234 82 --CVAYVRQDDILLPGLTVRETLTYTAILRLPRkssDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 169 MEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH----DMkmaHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHqprsDL---FRLFDRILLLSSGEIVYSG 226
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
8-237 |
5.62e-26 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 100.68 E-value: 5.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ--QGEILFKGEPVvwkgeshhrrpadp 85
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEvtEGEILFKGEDI-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 kqvlrirTNLSMvfqqfNLWAHMTIL---QNVMEAP-VTVLArdrgsvekaargYLEKVGIGdkcdvypaqLSGGQQQRA 161
Cdd:cd03217 67 -------TDLPP-----EERARLGIFlafQYPPEIPgVKNAD------------FLRYVNEG---------FSGGEKKRN 113
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMA-HDVSDHVVFLHQGLIEEQGPPE 237
Cdd:cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLdYIKPDRVHVLYDGRIVKSGDKE 190
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
8-239 |
6.17e-26 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 101.41 E-value: 6.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG--SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgesHHRRPADP 85
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG---------HDLALADP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQvlrIRTNLSMVFQQfNLWAHMTILQNVmeaPVTVLARDRGSVEKAAR-------------GYLEKVGIGDkcdvypAQ 152
Cdd:cd03252 72 AW---LRRQVGVVLQE-NVLFNRSIRDNI---ALADPGMSMERVIEAAKlagahdfiselpeGYDTIVGEQG------AG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEE 232
Cdd:cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVE 216
|
....*..
gi 114544175 233 QGPPETL 239
Cdd:cd03252 217 QGSHDEL 223
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
8-234 |
3.11e-25 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 99.40 E-value: 3.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR-CCNLLEDSQqGEILFKGEPvvWKGESHHrrpadpk 86
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKmITGILRPTS-GEIIFDGHP--WTRKDLH------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 qvlrirtNLSMVFQQFNLWAHMTILQNvMEAPVTVLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:TIGR03740 71 -------KIGSLIESPPLYENLTAREN-LKVHTTLLGLPDSRIDEV----LNIVDLTNTGKKKAKQFSLGMKQRLGIAIA 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-239 |
5.24e-25 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 101.06 E-value: 5.24e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpa 83
Cdd:PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV------------ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dPKQVLRIRTNLSMVFQQFNLWAHMTILQNVMeapvtVLARDRG----SVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQ 159
Cdd:PRK13536 106 -PARARLARARIGVVPQFDNLDLEFTVRENLL-----VFGRYFGmstrEIEAVIPSLLEFARLESKADARVSDLSGGMKR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-228 |
8.67e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 97.12 E-value: 8.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYgsleVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRR---- 81
Cdd:cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRagia 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 --PADPKQVLrirtnlsmVFQQFNLWAHMTIlqnvmeapvtvlardrgsvekaargylekvgigdkcdvyPAQLSGGQQQ 159
Cdd:cd03215 79 yvPEDRKREG--------LVLDLSVAENIAL---------------------------------------SSLLSGGNQQ 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
8-234 |
9.61e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 98.05 E-value: 9.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADP 85
Cdd:cd03245 3 IEFRNVSFSYPNQEipALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI---------RQLDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQvlrIRTNLSMVFQQFNLWAHmTILQN------------VMEAP----VTVLARdrgsveKAARGYLEKVGIGDkcdvy 149
Cdd:cd03245 74 AD---LRRNIGYVPQDVTLFYG-TLRDNitlgapladderILRAAelagVTDFVN------KHPNGLDLQIGERG----- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 pAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGeGRTMIIVTHDMKMAhDVSDHVVFLHQGL 229
Cdd:cd03245 139 -RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLL-DLVDRIIVMDSGR 215
|
....*
gi 114544175 230 IEEQG 234
Cdd:cd03245 216 IVADG 220
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
6-234 |
1.29e-24 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 102.21 E-value: 1.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnLL---EDSQQGEILFKGEPVvwkgeshhrr 81
Cdd:COG5265 356 GEVRFENVSFGYdPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLAR---LLfrfYDVTSGRILIDGQDI---------- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 pADPKQVlRIRTNLSMVFQQ---FNlwahMTILQNVM----EApvtvlarDRGSVEKAAR-------------GYLEKVG 141
Cdd:COG5265 423 -RDVTQA-SLRAAIGIVPQDtvlFN----DTIAYNIAygrpDA-------SEEEVEAAARaaqihdfieslpdGYDTRVG 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 142 -IGDKcdvypaqLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVthdmkmAHDVS- 219
Cdd:COG5265 490 eRGLK-------LSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVA-RGRTTLVI------AHRLSt 555
|
250
....*....|....*....
gi 114544175 220 ----DHVVFLHQGLIEEQG 234
Cdd:COG5265 556 ivdaDEILVLEAGRIVERG 574
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-232 |
2.33e-24 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 101.29 E-value: 2.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCcnLL--EDSQQGEIlfkgepvvwkgeshhrrpa 83
Cdd:COG0488 314 KVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKL--LAgeLEPDSGTV------------------- 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkqvlRIRTNLSMVF---QQFNLWAHMTILQNVMEapvtvlARDRGSvEKAARGYLEKVGI-GDKCDVYPAQLSGGQQQ 159
Cdd:COG0488 373 ------KLGETVKIGYfdqHQEELDPDKTVLDELRD------GAPGGT-EQEVRGYLGRFLFsGDDAFKPVGVLSGGEKA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGegrTMIIVTHDMKMAHDVSDHVVFLHQGLIEE 232
Cdd:COG0488 440 RLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDFPG---TVLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1-237 |
2.57e-24 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 101.36 E-value: 2.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEdSQQGEILFKGEPVvwkges 77
Cdd:COG4618 324 LPRPKGRLSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLlVGVWP-PTAGSVRLDGADL------ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 78 HHRRPAD--------PKQVlrirtnlsmvfQQFNlwahMTILQNVmeapvtvlAR----DRGSVEKAAR----------- 134
Cdd:COG4618 397 SQWDREElgrhigylPQDV-----------ELFD----GTIAENI--------ARfgdaDPEKVVAAAKlagvhemilrl 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 135 --GYLEKVGIGDkcdvypAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDM 212
Cdd:COG4618 454 pdGYDTRIGEGG------ARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP 527
|
250 260
....*....|....*....|....*
gi 114544175 213 KmAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:COG4618 528 S-LLAAVDKLLVLRDGRVQAFGPRD 551
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
28-243 |
2.65e-24 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 96.84 E-value: 2.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 28 VTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpadpkqvlRIRTNLSMVFQQFNL-WA 106
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----------------KGWRHIGYVPQRHEFaWD 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 107 H-MTILQNVMEAP---VTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSA 182
Cdd:TIGR03771 64 FpISVAHTVMSGRtghIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTG 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 183 LDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:TIGR03771 144 LDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQDPAP 204
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
7-252 |
3.67e-24 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 101.09 E-value: 3.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY----GSLEVLKGVDVTAHRGDVVSLIGSSGSGKS-TLLRCCNLLEDS----QQGEILF--KGEPVVWKG 75
Cdd:PRK10261 12 VLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAgglvQCDKMLLrrRSRQVIELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 76 EShhrrpaDPKQVLRIR-TNLSMVFQQfnlwaHMTILQNVMEAPVTV---------LARDRGSVEkaARGYLEKVGIGDK 145
Cdd:PRK10261 92 EQ------SAAQMRHVRgADMAMIFQE-----PMTSLNPVFTVGEQIaesirlhqgASREEAMVE--AKRMLDQVRIPEA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 146 CDV---YPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDH 221
Cdd:PRK10261 159 QTIlsrYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMGVVAEIADR 238
|
250 260 270
....*....|....*....|....*....|.
gi 114544175 222 VVFLHQGLIEEQGPPETLFGAPKSERLRGFL 252
Cdd:PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQHPYTRALL 269
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
8-228 |
7.49e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 94.21 E-value: 7.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADP 85
Cdd:cd03246 1 LEVENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI---------SQWDP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQvlrIRTNLSMVFQQFNLWAHmTILQNVmeapvtvlardrgsvekaargylekvgigdkcdvypaqLSGGQQQRAAIAR 165
Cdd:cd03246 72 NE---LGDHVGYLPQDDELFSG-SIAENI--------------------------------------LSGGQRQRLGLAR 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVsDHVVFLHQG 228
Cdd:cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASA-DRILVLEDG 171
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
6-239 |
1.03e-23 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 95.48 E-value: 1.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpadp 85
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDI-------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 kqvlrirTNLSM----------------VFQQfnlwahMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVY 149
Cdd:COG1137 68 -------THLPMhkrarlgigylpqeasIFRK------LTVEDNIL-AVLELRKLSKKEREERLEELLEEFGITHLRKSK 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 PAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGL 229
Cdd:COG1137 134 AYSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGK 213
|
250
....*....|
gi 114544175 230 IEEQGPPETL 239
Cdd:COG1137 214 VLAEGTPEEI 223
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
18-228 |
1.70e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 93.77 E-value: 1.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 18 GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC--CNLLEDSQQGEILFKGEPVvwkgeshhrrpadPKQVLRIRtnL 95
Cdd:cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAlaGRRTGLGVSGEVLINGRPL-------------DKRSFRKI--I 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 96 SMVFQQFNLWAHMTILQNVMEApvtvlARDRGsvekaargylekvgigdkcdvypaqLSGGQQQRAAIARALCMEPEALL 175
Cdd:cd03213 85 GYVPQDDILHPTLTVRETLMFA-----AKLRG-------------------------LSGGERKRVSIALELVSNPSLLF 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 176 FDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH-----DMKMAhdvsDHVVFLHQG 228
Cdd:cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHqpsseIFELF----DKLLLLSQG 188
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
33-250 |
2.17e-23 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 95.62 E-value: 2.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 33 GDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVV-WKGESHHRRPAdpkqvlrirtnlsMVFQQFNLWAHMTI- 110
Cdd:PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLEsWSSKAFARKVA-------------YLPQQLPAAEGMTVr 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 111 -LQNVMEAPV-TVLAR----DRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALD 184
Cdd:PRK10575 104 eLVAIGRYPWhGALGRfgaaDREKVEEA----ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 185 PELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSERLRG 250
Cdd:PRK10575 180 IAHQVDVLALVHRLSQErGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYG 246
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-230 |
2.57e-23 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 98.17 E-value: 2.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAygslEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCcnL--LEDSQQGEILFKGEPVvwkgesHHRRPA 83
Cdd:COG1129 255 VVLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARA--LfgADPADSGEIRLDGKPV------RIRSPR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DpkqvlRIRTNLSMV---FQQFNLWAHMTILQNVMeapVTVLAR-------DRGSVEKAARGYLEKVGIgdKC---DVYP 150
Cdd:COG1129 323 D-----AIRAGIAYVpedRKGEGLVLDLSIRENIT---LASLDRlsrggllDRRRERALAEEYIKRLRI--KTpspEQPV 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:COG1129 393 GNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRI 472
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
3-239 |
2.78e-23 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 98.20 E-value: 2.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRP 82
Cdd:PRK15439 7 TAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC------ARLTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKQVlrirtNLSMVFQQFNLWAHMTILQNVMEApvtvLARDRGSVEKAARgYLEKVGIGDKCDVYPAQLSGGQQQRAA 162
Cdd:PRK15439 81 AKAHQL-----GIYLVPQEPLLFPNLSVKENILFG----LPKRQASMQKMKQ-LLAALGCQLDLDSSAGSLEVADRQIVE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 163 IARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
33-252 |
3.33e-23 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 98.39 E-value: 3.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 33 GDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrRPADPKQVLRIRTNLSMVFQQ--FNLWAHMTI 110
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI---------DTLSPGKLQALRRDIQFIFQDpyASLDPRQTV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 111 LQNVMEaPVTVLARDRGsvEKAARG---YLEKVGI-GDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPE 186
Cdd:PRK10261 421 GDSIME-PLRVHGLLPG--KAAAARvawLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 187 LEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSERLRGFL 252
Cdd:PRK10261 498 IRGQIINLLLDLQRDfGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLM 564
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
12-251 |
5.55e-23 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 94.28 E-value: 5.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 12 NLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvvwkgesHHRRPADpKQVLRi 91
Cdd:PRK10253 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE--------HIQHYAS-KEVAR- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 92 rtNLSMVFQQFNLWAHMTILQNVMEAPVT---VLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALC 168
Cdd:PRK10253 82 --RIGLLAQNATTPGDITVQELVARGRYPhqpLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 169 MEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSER 247
Cdd:PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREkGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIER 239
|
....
gi 114544175 248 LRGF 251
Cdd:PRK10253 240 IYGL 243
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
24-254 |
5.85e-23 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 95.58 E-value: 5.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 24 KGVD---VTAHRGDVVSLIGSSGSGKSTllrcCNLledSQQGEILFKG----EPVVWKGESHHRRPADPKQVLrIRTNLS 96
Cdd:PRK11022 21 RAVDrisYSVKQGEVVGIVGESGSGKSV----SSL---AIMGLIDYPGrvmaEKLEFNGQDLQRISEKERRNL-VGAEVA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 97 MVFQQ--FNLWAHMTILQNVMEAPVTVLARDRGSVEKAARGYLEKVGIGD---KCDVYPAQLSGGQQQRAAIARALCMEP 171
Cdd:PRK11022 93 MIFQDpmTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDpasRLDVYPHQLSGGMSQRVMIAMAIACRP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 172 EALLFDEPTSALDPELEQEVVKVIKDLA-GEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKSERLRG 250
Cdd:PRK11022 173 KLLIADEPTTALDVTIQAQIIELLLELQqKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQA 252
|
....
gi 114544175 251 FLKS 254
Cdd:PRK11022 253 LLRA 256
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
8-239 |
7.11e-23 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 97.33 E-value: 7.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG--SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnLL---EDSQQGEILFKGEPVvwkgeshhrrp 82
Cdd:TIGR03797 452 IEVDRVTFRYRpdGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLR---LLlgfETPESGSVFYDGQDL----------- 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 aDPKQVLRIRTNLSMVFQQFNLwahMT--ILQNVM-EAPVTVlarDRgsVEKAARgyleKVGIGDKCDVYP--------- 150
Cdd:TIGR03797 518 -AGLDVQAVRRQLGVVLQNGRL---MSgsIFENIAgGAPLTL---DE--AWEAAR----MAGLAEDIRAMPmgmhtvise 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 --AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPElEQEVvkVIKDLAGEGRTMIIVTHDMKMAHDvSDHVVFLHQG 228
Cdd:TIGR03797 585 ggGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR-TQAI--VSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAG 660
|
250
....*....|.
gi 114544175 229 LIEEQGPPETL 239
Cdd:TIGR03797 661 RVVQQGTYDEL 671
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
8-239 |
1.76e-22 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 95.86 E-value: 1.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEV--LKGVDVTAHRGDVVSLIGSSGSGKSTLlrcCNLLE---DSQQGEILFKGepvvwkgesHHRRp 82
Cdd:PRK11176 342 IEFRNVTFTYPGKEVpaLRNINFKIPAGKTVALVGRSGSGKSTI---ANLLTrfyDIDEGEILLDG---------HDLR- 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpKQVLR-IRTNLSMVFQQFNLWaHMTILQNVMEApvtvlARD---RGSVEKAAR-----GYLEKVG------IGDKcd 147
Cdd:PRK11176 409 ---DYTLAsLRNQVALVSQNVHLF-NDTIANNIAYA-----RTEqysREQIEEAARmayamDFINKMDngldtvIGEN-- 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 vyPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQ 227
Cdd:PRK11176 478 --GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEK-ADEILVVED 553
|
250
....*....|..
gi 114544175 228 GLIEEQGPPETL 239
Cdd:PRK11176 554 GEIVERGTHAEL 565
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
8-239 |
2.06e-22 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 95.96 E-value: 2.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG--SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrPADP 85
Cdd:TIGR01846 456 ITFENIRFRYApdSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA---------IADP 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQvlrIRTNLSMVFQQfNLWAHMTILQNVM-------EAPVTVLARDRGS---VEKAARGYLEKVGigdkcdVYPAQLSG 155
Cdd:TIGR01846 527 AW---LRRQMGVVLQE-NVLFSRSIRDNIAlcnpgapFEHVIHAAKLAGAhdfISELPQGYNTEVG------EKGANLSG 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGP 235
Cdd:TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGR 674
|
....
gi 114544175 236 PETL 239
Cdd:TIGR01846 675 HEEL 678
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
5-224 |
2.77e-22 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 95.36 E-value: 2.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKgeshHRRPAd 84
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA----STTAA- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlrIRTNLSMVFQQFNLWAHMTILQNVMeapvtvLAR--------DRGSVEKAARGYLEKVGIgdkcDVYPAQ---- 152
Cdd:PRK11288 77 ------LAAGVAIIYQELHLVPEMTVAENLY------LGQlphkggivNRRLLNYEAREQLEHLGV----DIDPDTplky 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALD-PELEQeVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHV-VF 224
Cdd:PRK11288 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSaREIEQ-LFRVIRELRAEGRVILYVSHRMEEIFALCDAItVF 213
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
7-254 |
3.64e-22 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 92.16 E-value: 3.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY---------GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWkGES 77
Cdd:PRK15112 4 LLEVRNLSKTFryrtgwfrrQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-GDY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 78 HHRRPadpkqvlRIRtnlsMVFQ--QFNLWAHMTILQnVMEAPVTvLARDRGSVEKAARGY--LEKVGI-GDKCDVYPAQ 152
Cdd:PRK15112 83 SYRSQ-------RIR----MIFQdpSTSLNPRQRISQ-ILDFPLR-LNTDLEPEQREKQIIetLRQVGLlPDHASYYPHM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIE 231
Cdd:PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELqEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
250 260
....*....|....*....|...
gi 114544175 232 EQGPPETLFGAPKSERLRGFLKS 254
Cdd:PRK15112 230 ERGSTADVLASPLHELTKRLIAG 252
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
8-243 |
3.72e-22 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 95.16 E-value: 3.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFkgepvvwkgeshHRRPADPKQ 87
Cdd:PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF------------HDIPLTKLQ 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLRIRTNLSMVFQQFNLWAHmTILQNVmeapvtVLARDRGS---VEKAAR-------------GYLEKVGigdkcdVYPA 151
Cdd:PRK10789 384 LDSWRSRLAVVSQTPFLFSD-TVANNI------ALGRPDATqqeIEHVARlasvhddilrlpqGYDTEVG------ERGV 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLaGEGRTMIIVTHDMKMAHDVSDHVVfLHQGLIE 231
Cdd:PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALTEASEILV-MQHGHIA 528
|
250
....*....|..
gi 114544175 232 EQGPPETLFGAP 243
Cdd:PRK10789 529 QRGNHDQLAQQS 540
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
5-238 |
7.21e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 90.91 E-value: 7.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAY-------GSL---------------EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLE-DSq 60
Cdd:COG1134 2 SSMIEVENVSKSYrlyhepsRSLkelllrrrrtrreefWALKDVSFEVERGESVGIIGRNGAGKSTLLKLiAGILEpTS- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 61 qGEILFKGEpVVWkgeshhrrpadpkqVLrirtNLSMVFQqfnlwAHMTILQNVMeapvtVLARDRGSVEKAARGYLEKV 140
Cdd:COG1134 81 -GRVEVNGR-VSA--------------LL----ELGAGFH-----PELTGRENIY-----LNGRLLGLSRKEIDEKFDEI 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 141 ----GIGDKCDV----YpaqlSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDM 212
Cdd:COG1134 131 vefaELGDFIDQpvktY----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSM 206
|
250 260
....*....|....*....|....*.
gi 114544175 213 KMAHDVSDHVVFLHQGLIEEQGPPET 238
Cdd:COG1134 207 GAVRRLCDRAIWLEKGRLVMDGDPEE 232
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
8-234 |
7.24e-22 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 94.26 E-value: 7.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE---DSQQGEILFKGEpvvwkgeshhrrpa 83
Cdd:PRK13657 335 VEFDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI---NLLQrvfDPQSGRILIDGT-------------- 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLR--IRTNLSMVFQQFNLWAHmTILQN------------VMEAPVTVLARDrgSVEKAARGYLEKVGIGDKcdvy 149
Cdd:PRK13657 398 DIRTVTRasLRRNIAVVFQDAGLFNR-SIEDNirvgrpdatdeeMRAAAERAQAHD--FIERKPDGYDTVVGERGR---- 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 paQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDvSDHVVFLHQGL 229
Cdd:PRK13657 471 --QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRN-ADRILVFDNGR 546
|
....*
gi 114544175 230 IEEQG 234
Cdd:PRK13657 547 VVESG 551
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
8-228 |
9.62e-22 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 87.89 E-value: 9.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnlledsqqgeilfkgepvvwkgeshhrrpadpkq 87
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLK------------------------------------ 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtnlsmvfqqfnlwahmtILQNVMEApvtvlarDRGSVEKAArgyleKVGIGdkcdvYPAQLSGGQQQRAAIARAL 167
Cdd:cd03221 45 ----------------------LIAGELEP-------DEGIVTWGS-----TVKIG-----YFEQLSGGEKMRLALAKLL 85
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 168 CMEPEALLFDEPTSALDPELEQEVVKVIKDLAGegrTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYPG---TVILVSHDRYFLDQVATKIIELEDG 143
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
8-230 |
1.24e-21 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 90.53 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwKGESHHRrpadpkq 87
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV--EGPGAER------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtnlSMVFQQFNLWAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARAL 167
Cdd:PRK11248 73 --------GVVFQNEGLLPWRNVQDNV-AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 168 CMEPEALLFDEPTSALDP-ELEQEVVKVIKDLAGEGRTMIIVTHDMKMAhdvsdhvVFLHQGLI 230
Cdd:PRK11248 144 AANPQLLLLDEPFGALDAfTREQMQTLLLKLWQETGKQVLLITHDIEEA-------VFMATELV 200
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
21-239 |
1.30e-21 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 93.57 E-value: 1.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 21 EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR--CCNLLEDSQ-QGEILFKGEPVvwkgeshhrrpaDPKQVLRIrtnlSM 97
Cdd:TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNalAFRSPKGVKgSGSVLLNGMPI------------DAKEMRAI----SA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 98 VFQQFNLW-AHMTILQNVMEAPVTVLARDRGSVEKAAR--GYLEKVG--------IGDKCDVypAQLSGGQQQRAAIARA 166
Cdd:TIGR00955 103 YVQQDDLFiPTLTVREHLMFQAHLRMPRRVTKKEKRERvdEVLQALGlrkcantrIGVPGRV--KGLSGGERKRLAFASE 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDmKMAH--DVSDHVVFLHQGLIEEQGPPETL 239
Cdd:TIGR00955 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQ-PSSElfELFDKIILMAEGRVAYLGSPDQA 254
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
6-228 |
1.38e-21 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 93.07 E-value: 1.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR--CCNLLEDSQQGEILFKGEPVVwkgeSHHRRPA 83
Cdd:PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKvlSGVYPHGTYEGEIIFEGEELQ----ASNIRDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVLRIRTNLSMVfqqfnlwAHMTILQNVM--EAPVTVLARDRGSVEKAARGYLEKVGIgdkcDVYPA----QLSGGQ 157
Cdd:PRK13549 80 ERAGIAIIHQELALV-------KELSVLENIFlgNEITPGGIMDYDAMYLRAQKLLAQLKL----DINPAtpvgNLGLGQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDpELEQEVV-KVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLT-ESETAVLlDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
10-228 |
1.56e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 93.21 E-value: 1.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 10 IRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEIlfkgepvvwkgeshhrrpadpkqvl 89
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV------------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 90 RIRTNLSMVF--QQFNLWAHMTILQNVMEA--PVTVLARDRGSVEKA-----------------------------ARGY 136
Cdd:COG0488 56 SIPKGLRIGYlpQEPPLDDDLTVLDTVLDGdaELRALEAELEELEAKlaepdedlerlaelqeefealggweaearAEEI 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 137 LEKVGIGD-----KCdvypAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPE----LEQEvvkvikdLAGEGRTMII 207
Cdd:COG0488 136 LSGLGFPEedldrPV----SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLEsiewLEEF-------LKNYPGTVLV 204
|
250 260
....*....|....*....|.
gi 114544175 208 VTHDMKMAHDVSDHVVFLHQG 228
Cdd:COG0488 205 VSHDRYFLDRVATRILELDRG 225
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
5-228 |
1.58e-21 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 93.14 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGeshhrrPAD 84
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG------PKS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKQvlrirTNLSMVFQQFNLWAHMTILQNVM--EAPVTVLAR-DRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK10762 76 SQE-----AGIGIIHQELNLIPQLTIAENIFlgREFVNRFGRiDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 162 AIARALCMEPEALLFDEPTSAL-DPELEQeVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:PRK10762 151 EIAKVLSFESKVIIMDEPTDALtDTETES-LFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
7-241 |
1.92e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 90.54 E-value: 1.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNL---HKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpa 83
Cdd:PRK13642 4 ILEVENLvfkYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT----------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dPKQVLRIRTNLSMVFQQ-FNLWAHMTILQNV---MEAPvtvlARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQ 159
Cdd:PRK13642 73 -AENVWNLRRKIGMVFQNpDNQFVGATVEDDVafgMENQ----GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR-TMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGPPET 238
Cdd:PRK13642 148 RVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQlTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSE 226
|
...
gi 114544175 239 LFG 241
Cdd:PRK13642 227 LFA 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
7-228 |
3.64e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 92.20 E-value: 3.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR--CCNLLEDSQQGEILFKGEPVVwkgeSHHRRPAD 84
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKilSGVYPHGTWDGEIYWSGSPLK----ASNIRDTE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlriRTNLSMVFQQFNLWAHMTILQNVM---EAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYP-AQLSGGQQQR 160
Cdd:TIGR02633 77 -------RAGIVIIHQELTLVPELSVAENIFlgnEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
6-234 |
2.84e-20 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 86.47 E-value: 2.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVV-Wkgeshhrrpad 84
Cdd:PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITdW----------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkQVLRI-RTNLSMVFQQFNLWAHMTILQNVmeAPVTVLARDRGSVEKAARGYlekvgigdkcDVYP----------AQL 153
Cdd:PRK11614 73 --QTAKImREAVAIVPEGRRVFSRMTVEENL--AMGGFFAERDQFQERIKWVY----------ELFPrlherriqraGTM 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 154 SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG--LIE 231
Cdd:PRK11614 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGhvVLE 218
|
...
gi 114544175 232 EQG 234
Cdd:PRK11614 219 DTG 221
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
11-247 |
4.07e-20 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 86.86 E-value: 4.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 11 RNLHKAygslevLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpadpKQVLR 90
Cdd:PRK15056 17 RNGHTA------LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT--------------RQALQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 91 iRTNLSMVFQQFNL-WAHMTILQNV--------MEAPVTVLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK15056 77 -KNLVAYVPQSEEVdWSFPVLVEDVvmmgryghMGWLRRAKKRDRQIVTAA----LARVDMVEFRHRQIGELSGGQKKRV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLhQGLIEEQGPPETLFG 241
Cdd:PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230
|
....*.
gi 114544175 242 APKSER 247
Cdd:PRK15056 231 AENLEL 236
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-228 |
4.45e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 85.94 E-value: 4.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccnlleD-------SQQGEILFKGEPVVW 73
Cdd:COG4674 4 DTMHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLM-------DvitgktrPDSGSVLFGGTDLTG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 74 KGEShhrrpadpkQVLRI---RTnlsmvFQQFNLWAHMTILQNVMEApvtvLARDRG---------SVEKAAR--GYLEK 139
Cdd:COG4674 77 LDEH---------EIARLgigRK-----FQKPTVFEELTVFENLELA----LKGDRGvfaslfarlTAEERDRieEVLET 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 140 VGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEgRTMIIVTHDMKMAHDVS 219
Cdd:COG4674 139 IGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGK-HSVVVVEHDMEFVRQIA 217
|
....*....
gi 114544175 220 DHVVFLHQG 228
Cdd:COG4674 218 RKVTVLHQG 226
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
8-234 |
5.62e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 85.46 E-value: 5.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY----------GSL-----------EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDSQqGEIL 65
Cdd:cd03267 1 IEVSNLSKSYrvyskepgliGSLkslfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIlSGLLQPTS-GEVR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 66 FKGEpVVWKGESHHRRpadpkqvlrirtNLSMVFQQFN-LWAHMTilqnVMEApVTVLARDRGSVEKAARGYLEKVG--- 141
Cdd:cd03267 80 VAGL-VPWKRRKKFLR------------RIGVVFGQKTqLWWDLP----VIDS-FYLLAAIYDLPPARFKKRLDELSell 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 142 -IGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVS 219
Cdd:cd03267 142 dLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRErGTTVLLTSHYMKDIEALA 221
|
250
....*....|....*
gi 114544175 220 DHVVFLHQGLIEEQG 234
Cdd:cd03267 222 RRVLVIDKGRLLYDG 236
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
12-243 |
5.89e-20 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 87.62 E-value: 5.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 12 NLHKAYGSLeVLKgVDVTAHRGDVVSLIGSSGSGKSTLLrccNL---LEDSQQGEI------LFKGEPVVWKgeSHHRRp 82
Cdd:PRK11144 5 NFKQQLGDL-CLT-VNLTLPAQGITAIFGRSGAGKTSLI---NAisgLTRPQKGRIvlngrvLFDAEKGICL--PPEKR- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpkqvlrirtNLSMVFQQFNLWAHMTILQNVmeapvtvlardRGSVEKAARGYLEKV----GIGDKCDVYPAQLSGGQQ 158
Cdd:PRK11144 77 -----------RIGYVFQDARLFPHYKVRGNL-----------RYGMAKSMVAQFDKIvallGIEPLLDRYPGSLSGGEK 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMII-VTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILyVSHSLDEILRLADRVVVLEQGKVKAFGPLE 214
|
....*.
gi 114544175 238 TLFGAP 243
Cdd:PRK11144 215 EVWASS 220
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
9-237 |
8.65e-20 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 85.12 E-value: 8.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLlrcCNLL---EDSQ--QGEILFKGEPVVwkgeshhrrPA 83
Cdd:COG0396 2 EIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTL---AKVLmghPKYEvtSGSILLDGEDIL---------EL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQvlRIRTNLSMVFQQ---------FNLWahMTILQNVMEAPVTVLArdrgsVEKAARGYLEKVGI-----------G 143
Cdd:COG0396 70 SPDE--RARAGIFLAFQYpveipgvsvSNFL--RTALNARRGEELSARE-----FLKLLKEKMKELGLdedfldryvneG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 144 dkcdvypaqLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKM-AHDVSDHV 222
Cdd:COG0396 141 ---------FSGGEKKRNEILQMLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYQRIlDYIKPDFV 211
|
250
....*....|....*
gi 114544175 223 VFLHQGLIEEQGPPE 237
Cdd:COG0396 212 HVLVDGRIVKSGGKE 226
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
3-258 |
1.95e-19 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 87.10 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYG-SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrr 81
Cdd:TIGR01193 469 NLNGDIVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL---------- 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 padpKQVLR--IRTNLSMVFQQFNLWAHmTILQN-VMEAPVTV----------LARDRGSVEKAARGYlekvgiGDKCDV 148
Cdd:TIGR01193 539 ----KDIDRhtLRQFINYLPQEPYIFSG-SILENlLLGAKENVsqdeiwaaceIAEIKDDIENMPLGY------QTELSE 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 149 YPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLagEGRTMIIVTHDMKMAHDvSDHVVFLHQG 228
Cdd:TIGR01193 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQ-SDKIIVLDHG 684
|
250 260 270
....*....|....*....|....*....|
gi 114544175 229 LIEEQGPPETLFGApkserlRGFLKSTTHA 258
Cdd:TIGR01193 685 KIIEQGSHDELLDR------NGFYASLIHN 708
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-243 |
2.23e-19 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 85.55 E-value: 2.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLEvlkGvDVTA--------HRGDVVSLIGSSGSGKS-TLLRCCNLLEDSQQ--GEILFKGE 69
Cdd:PRK09473 6 QQQADALLDVKDLRVTFSTPD---G-DVTAvndlnfslRAGETLGIVGESGSGKSqTAFALMGLLAANGRigGSATFNGR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 70 PVVWKGEshhrrpadpKQVLRIRT-NLSMVFQQ--FNLWAHMTILQNVMEapvtVLARDRGSVEKAArgYLEKVGIGD-- 144
Cdd:PRK09473 82 EILNLPE---------KELNKLRAeQISMIFQDpmTSLNPYMRVGEQLME----VLMLHKGMSKAEA--FEESVRMLDav 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 145 -------KCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMII-VTHDMKMAH 216
Cdd:PRK09473 147 kmpearkRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIImITHDLGVVA 226
|
250 260
....*....|....*....|....*..
gi 114544175 217 DVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:PRK09473 227 GICDKVLVMYAGRTMEYGNARDVFYQP 253
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
8-210 |
2.71e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 82.79 E-value: 2.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHR------- 80
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHEnilylgh 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPAdPKQVLRIRTNLsmvfqQFnlwahmtilqnvmeapvtvLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:TIGR01189 81 LPG-LKPELSALENL-----HF-------------------WAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRR 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:TIGR01189 136 LALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
6-243 |
3.89e-19 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 84.85 E-value: 3.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNL----HKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDSqqgeilfkgepvvWKGESHHR 80
Cdd:PRK15093 2 PLLDIRNLtiefKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAiCGVTKDN-------------WRVTADRM 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPAD-------PKQVLR-IRTNLSMVFQ--QFNLWAHMTILQNVMEA-PVTVLA---------RDRGSVEkaargYLEKV 140
Cdd:PRK15093 69 RFDDidllrlsPRERRKlVGHNVSMIFQepQSCLDPSERVGRQLMQNiPGWTYKgrwwqrfgwRKRRAIE-----LLHRV 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 141 GIGDKCDV---YPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKMAH 216
Cdd:PRK15093 144 GIKDHKDAmrsFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLS 223
|
250 260
....*....|....*....|....*..
gi 114544175 217 DVSDHVVFLHQGLIEEQGPPETLFGAP 243
Cdd:PRK15093 224 QWADKINVLYCGQTVETAPSKELVTTP 250
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-228 |
4.70e-19 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 85.99 E-value: 4.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgesHHRRP 82
Cdd:PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN---------INYNK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPKqvLRIRTNLSMVFQQFNLWAHMTILQN----------VMEAPVTvlarDRGSVEKAARGYLEKVGIGDKCDVYPAQ 152
Cdd:PRK09700 72 LDHK--LAAQLGIGIIYQELSVIDELTVLENlyigrhltkkVCGVNII----DWREMRVRAAMMLLRVGLKVDLDEKVAN 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSAL-DPELEQeVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLtNKEVDY-LFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
1-237 |
5.91e-19 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 85.86 E-value: 5.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnlledsqqgeiLFKGepvVWKGESH 78
Cdd:TIGR01842 310 LPEPEGHLSVENVTIVPpgGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLAR-------------LIVG---IWPPTSG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 79 HRR--PADPKQVLRIRTNLSMVF--QQFNLWAHmTILQNVmeAPVTVLARDRGSVEkAAR-------------GYLEKVG 141
Cdd:TIGR01842 374 SVRldGADLKQWDRETFGKHIGYlpQDVELFPG-TVAENI--ARFGENADPEKIIE-AAKlagvhelilrlpdGYDTVIG 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 142 IGDkcdvypAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVsDH 221
Cdd:TIGR01842 450 PGG------ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-DK 522
|
250
....*....|....*.
gi 114544175 222 VVFLHQGLIEEQGPPE 237
Cdd:TIGR01842 523 ILVLQDGRIARFGERD 538
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
8-242 |
1.41e-18 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 84.77 E-value: 1.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE-VLKGVDVTAHRGDVVSLIGSSGSGKSTLlrcCNLLEDS---QQGEILFKGEPVvwKGESHhrrpa 83
Cdd:PRK10790 341 IDIDNVSFAYRDDNlVLQNINLSVPSRGFVALVGHTGSGKSTL---ASLLMGYyplTEGEIRLDGRPL--SSLSH----- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 dpkQVLRirTNLSMVfQQfnlwaHMTILQNVMEAPVTvLARDRGsvEKAARGYLEKVGIGDKCDVYPA-----------Q 152
Cdd:PRK10790 411 ---SVLR--QGVAMV-QQ-----DPVVLADTFLANVT-LGRDIS--EEQVWQALETVQLAELARSLPDglytplgeqgnN 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKdLAGEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEE 232
Cdd:PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAVE 554
|
250
....*....|
gi 114544175 233 QGPPETLFGA 242
Cdd:PRK10790 555 QGTHQQLLAA 564
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
22-210 |
2.07e-18 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 84.09 E-value: 2.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEIlfkgepvvwkgeshhRRPADPKqvlrirtnlsMVF-- 99
Cdd:COG4178 378 LLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRI---------------ARPAGAR----------VLFlp 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 100 QQfnlwAHMtILQNVMEA---PVTVLARDRGSVEKAargyLEKVGIG------DKCDVYPAQLSGGQQQRAAIARALCME 170
Cdd:COG4178 433 QR----PYL-PLGTLREAllyPATAEAFSDAELREA----LEAVGLGhlaerlDEEADWDQVLSLGEQQRLAFARLLLHK 503
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 114544175 171 PEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTH 210
Cdd:COG4178 504 PDWLFLDEATSALDEENEAALYQLLRE-ELPGTTVISVGH 542
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
33-239 |
2.33e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 84.13 E-value: 2.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 33 GDVVSLIGSSGSGKSTLLrccNLLED--SQQGEILFKGEPVvwkgeshhrRPADPKQvlrIRTNLSMVFQQFNLWaHMTI 110
Cdd:PRK11174 376 GQRIALVGPSGAGKTSLL---NALLGflPYQGSLKINGIEL---------RELDPES---WRKHLSWVGQNPQLP-HGTL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 111 LQNVMeapvtvLARDRGSvEKAARGYLEKVGIGDKCDVYP-----------AQLSGGQQQRAAIARALCMEPEALLFDEP 179
Cdd:PRK11174 440 RDNVL------LGNPDAS-DEQLQQALENAWVSEFLPLLPqgldtpigdqaAGLSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 180 TSALDPELEQEVVKVIKDlAGEGRTMIIVTHDMKMAHDVsDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK11174 513 TASLDAHSEQLVMQALNA-ASRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAEL 570
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
23-237 |
7.56e-18 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 79.88 E-value: 7.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLL-RCCNLLedSQQGEILFKGEPVvwkgeshhrRPADPKQVLRIRTNLSmvfQQ 101
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLaRMAGLL--PGQGEILLNGRPL---------SDWSAAELARHRAYLS---QQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 FNLWAHMTILQNVMeapvtvLARDRGSVEKAARGYL----EKVGIGDKCDVYPAQLSGGQQQRAAIARALC-----MEPE 172
Cdd:COG4138 78 QSPPFAMPVFQYLA------LHQPAGASSEAVEQLLaqlaEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptINPE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 173 A--LLFDEPTSALDpeLEQEVV--KVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:COG4138 152 GqlLLLDEPMNSLD--VAQQAAldRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETA 218
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
8-236 |
1.11e-17 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 79.07 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE--VLKGVDVTAHRGDVVSLIGSSGSGKST----LLRccnLLEDSQqGEILFKGEpvvwkgeshhrr 81
Cdd:cd03244 3 IEFKNVSLRYRPNLppVLKNISFSIKPGEKVGIVGRTGSGKSSlllaLFR---LVELSS-GSILIDGV------------ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 paDPKQV--LRIRTNLSMVFQQFNLWAHmTILQNVmeAPVTVLArdrgsvEKAARGYLEKVGIGDKCDVYP--------- 150
Cdd:cd03244 67 --DISKIglHDLRSRISIIPQDPVLFSG-TIRSNL--DPFGEYS------DEELWQALERVGLKEFVESLPggldtvvee 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 151 --AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTHDMKMAHDvSDHVVFLHQG 228
Cdd:cd03244 136 ggENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIID-SDRILVLDKG 213
|
....*...
gi 114544175 229 LIEEQGPP 236
Cdd:cd03244 214 RVVEFDSP 221
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
8-210 |
1.67e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 78.30 E-value: 1.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRrpadpkq 87
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 vlrirtNLSMVFQQFNLWAHMTILQNvmeapVTVLARDRG--SVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:cd03231 74 ------GLLYLGHAPGIKTTLSVLEN-----LRFWHADHSdeQVEEA----LARVGLNGFEDRPVAQLSAGQQRRVALAR 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
22-228 |
1.80e-17 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 78.28 E-value: 1.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCcnlledsqqgeILfkGEPVVWKGESHHRRpadpkqvlrirtNLSMVFQQ 101
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSA-----------LL--GELEKLSGSVSVPG------------SIAYVSQE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 ---FNlwahMTILQN--------------VMEApvTVLARDrgsVEKAARGylEKVGIGDKcdvyPAQLSGGQQQRAAIA 164
Cdd:cd03250 75 pwiQN----GTIRENilfgkpfdeeryekVIKA--CALEPD---LEILPDG--DLTEIGEK----GINLSGGQKQRISLA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 165 RALCMEPEALLFDEPTSALDPELEQEVV-KVIKDLAGEGRTMIIVTHDMKMAHDVsDHVVFLHQG 228
Cdd:cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQLQLLPHA-DQIVVLDNG 203
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
12-248 |
3.87e-17 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 78.01 E-value: 3.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 12 NLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpadpkQVL-- 89
Cdd:PRK10895 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI---------------SLLpl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 90 --RIRTNLSMVFQQFNLWAHMTILQNVMeaPVTVLARDRGSVEKAARG--YLEKVGIGDKCDVYPAQLSGGQQQRAAIAR 165
Cdd:PRK10895 73 haRARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRAneLMEEFHIEHLRDSMGQSLSGGERRRVEIAR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHV 230
|
...
gi 114544175 246 ERL 248
Cdd:PRK10895 231 KRV 233
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
10-228 |
4.37e-17 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 80.16 E-value: 4.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 10 IRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHhrrpadpkqvl 89
Cdd:PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 90 RIRTNLSMVFQQFNLWAHMTILQNVM--EAPVTVLARDRGSVEKAARGYLEKVGIgdkcDVYP----AQLSGGQQQRAAI 163
Cdd:PRK10982 70 ALENGISMVHQELNLVLQRSVMDNMWlgRYPTKGMFVDQDKMYRDTKAIFDELDI----DIDPrakvATLSVSQMQMIEI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 164 ARALCMEPEALLFDEPTSALDpelEQEV---VKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:PRK10982 146 AKAFSYNAKIVIMDEPTSSLT---EKEVnhlFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
10-234 |
1.07e-16 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 76.42 E-value: 1.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 10 IRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLE-DSqqGEILFKGEpVVWkgeshhrrpadpkq 87
Cdd:cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLlAGIYPpDS--GTVTVRGR-VSS-------------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 88 VLrirtNLSMVFQqfnlwAHMTILQNV-MEApvTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:cd03220 88 LL----GLGGGFN-----PELTGRENIyLNG--RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQG 234
Cdd:cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
22-228 |
1.21e-16 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 76.15 E-value: 1.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCnlledsqQGEIlfKGEPVVWKGEshhrrpadpkqvlrirtnlsmvFQQ 101
Cdd:COG2401 45 VLRDLNLEIEPGEIVLIVGASGSGKSTLLRLL-------AGAL--KGTPVAGCVD----------------------VPD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 FNLWAHMTILQNVMeapvtvlarDRGSVeKAARGYLEKVGIGDkcdVY-----PAQLSGGQQQRAAIARALCMEPEALLF 176
Cdd:COG2401 94 NQFGREASLIDAIG---------RKGDF-KDAVELLNAVGLSD---AVlwlrrFKELSTGQKFRFRLALLLAERPKLLVI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 114544175 177 DEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVS-DHVVFLHQG 228
Cdd:COG2401 161 DEFCSHLDRQTAKRVARNLQKLARRaGITLVVATHHYDVIDDLQpDLLIFVGYG 214
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
8-211 |
1.49e-16 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 78.48 E-value: 1.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYG--SLEVlKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpaDP 85
Cdd:PRK10522 323 LELRNVTFAYQdnGFSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV------------TA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMtilqnvmeapvtvLARDRGSVEKAA-RGYLEKVGIGDKCD-----VYPAQLSGGQQQ 159
Cdd:PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQL-------------LGPEGKPANPALvEKWLERLKMAHKLEledgrISNLKLSKGQKK 456
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHD 211
Cdd:PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEmGKTIFAISHD 509
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-211 |
1.74e-16 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 75.91 E-value: 1.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHR 80
Cdd:PRK10247 1 MQENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpadpKQVlrirtnlSMVFQQFNLWAHmTILQNVMeAPVTVlaRDRGSVEKAARGYLEKVGIGDKCDVYP-AQLSGGQQQ 159
Cdd:PRK10247 81 -----QQV-------SYCAQTPTLFGD-TVYDNLI-FPWQI--RNQQPDPAIFLDDLERFALPDTILTKNiAELSGGEKQ 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMII-VTHD 211
Cdd:PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLwVTHD 197
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-236 |
2.06e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.82 E-value: 2.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHK---AYGSLEVLKgVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkges 77
Cdd:TIGR01257 922 LPGLVPGVCVKNLVKifePSGRPAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI------ 994
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 78 hhrrpadPKQVLRIRTNLSMVFQQFNLWAHMTILQNVM-EAPVTVLARDRGSVEKAArgYLEKVGIGDKCDVYPAQLSGG 156
Cdd:TIGR01257 995 -------ETNLDAVRQSLGMCPQHNILFHHLTVAEHILfYAQLKGRSWEEAQLEMEA--MLEDTGLHHKRNEEAQDLSGG 1065
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPP 236
Cdd:TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
6-210 |
5.34e-15 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 71.44 E-value: 5.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVV---WKGESHHRRP 82
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDdpdVAEACHYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADP-KQVLRIRTNLsmvfqQFnlWAHmtilqnvmeapvtVLARDRGSVEKAargyLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK13539 81 RNAmKPALTVAENL-----EF--WAA-------------FLGGEELDIAAA----LEAVGLAPLAHLPFGYLSAGQKRRV 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
32-237 |
1.12e-14 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 71.50 E-value: 1.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 32 RGDVVSLIGSSGSGKSTLL-RCCNLLedSQQGEILFKGEPVvwkgeshhrRPADPKQVLRIRTNLSmvfQQFNLWAHMTI 110
Cdd:PRK03695 21 AGEILHLVGPNGAGKSTLLaRMAGLL--PGSGSIQFAGQPL---------EAWSAAELARHRAYLS---QQQTPPFAMPV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 111 LQNVM--EAPVTVLARDRGSVEKAArgylEKVGIGDKCDVYPAQLSGGQQQRAAIArALCME------PEA--LLFDEPT 180
Cdd:PRK03695 87 FQYLTlhQPDKTRTEAVASALNEVA----EALGLDDKLGRSVNQLSGGEWQRVRLA-AVVLQvwpdinPAGqlLLLDEPM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 181 SALDpeLEQEVV--KVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPE 237
Cdd:PRK03695 162 NSLD--VAQQAAldRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
7-228 |
1.45e-14 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 72.55 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNL---HKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC-NLLEDSQQGEILFKGEPVvwkgesHHRRP 82
Cdd:TIGR02633 257 ILEARNLtcwDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALfGAYPGKFEGNVFINGKPV------DIRNP 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPkqvlrIRTNLSMV---FQQFNLWAHMTILQN----VMEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYP-AQLS 154
Cdd:TIGR02633 331 AQA-----IRAGIAMVpedRKRHGIVPILGVGKNitlsVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPiGRLS 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
6-232 |
1.49e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.89 E-value: 1.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAygSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvvwkgESHHRRPADP 85
Cdd:PRK09700 264 TVFEVRNVTSR--DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGK------DISPRSPLDA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 kqvlrIRTNLSMVFQ---QFNLWAHMTILQNVMEAPVTVLARDRGSV--------EKAARGYLEKVGIgdKC---DVYPA 151
Cdd:PRK09700 336 -----VKKGMAYITEsrrDNGFFPNFSIAQNMAISRSLKDGGYKGAMglfhevdeQRTAENQRELLAL--KChsvNQNIT 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIE 231
Cdd:PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488
|
.
gi 114544175 232 E 232
Cdd:PRK09700 489 Q 489
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
131-254 |
1.93e-14 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 72.51 E-value: 1.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 131 KAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:COG1245 191 GKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGKYVLVVEH 270
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 211 DMKMAHDVSDHVVFLHqglieeqGPPetlfGA------PKSER------LRGFLKS 254
Cdd:COG1245 271 DLAILDYLADYVHILY-------GEP----GVygvvskPKSVRvginqyLDGYLPE 315
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
7-228 |
2.22e-14 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 72.13 E-value: 2.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLED-----SQQGEILFKGEPVVWKG--ESHH 79
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLM---KVLSGvyphgSYEGEILFDGEVCRFKDirDSEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 80 RrpadpkqvlrirtNLSMVFQQFNLWAHMTILQNVM---EApvtvlAR----DRGSVEKAARGYLEKVGIGDKCDVYPAQ 152
Cdd:NF040905 78 L-------------GIVIIHQELALIPYLSIAENIFlgnER-----AKrgviDWNETNRRARELLAKVGLDESPDTLVTD 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:NF040905 140 IGVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDG 215
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
22-228 |
2.88e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 71.83 E-value: 2.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLEDSQQGEIlFKGEPVVwkgesHHRRPAdpKQVLRiRTNLsmVFQQ 101
Cdd:PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLL---NALAGRIQGNN-FTGTILA-----NNRKPT--KQILK-RTGF--VTQD 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 FNLWAHMTILQNVMEAPVTVLARDRGSVEK--AARGYLEKVGIGdKC------DVYPAQLSGGQQQRAAIARALCMEPEA 173
Cdd:PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKilVAESVISELGLT-KCentiigNSFIRGISGGERKRVSIAHEMLINPSL 227
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 174 LLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHD-MKMAHDVSDHVVFLHQG 228
Cdd:PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEG 283
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
8-232 |
3.37e-14 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 71.75 E-value: 3.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLE-----VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrp 82
Cdd:COG4615 328 LELRGVTYRYPGEDgdegfTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPV----------- 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 aDPKQVLRIRTNLSMVFQQFNLWAHmtilqnvmeapvtVLARDRGSVEKAARGYLEKVGIGDKCDVY-----PAQLSGGQ 157
Cdd:COG4615 397 -TADNREAYRQLFSAVFSDFHLFDR-------------LLGLDGEADPARARELLERLELDHKVSVEdgrfsTTDLSQGQ 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDP--------ELeqevvkvIKDLAGEGRTMIIVTHDMKMAHdVSDHVVFLHQGL 229
Cdd:COG4615 463 RKRLALLVALLEDRPILVFDEWAADQDPefrrvfytEL-------LPELKARGKTVIAISHDDRYFD-LADRVLKMDYGK 534
|
...
gi 114544175 230 IEE 232
Cdd:COG4615 535 LVE 537
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
5-210 |
4.57e-14 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 69.67 E-value: 4.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC------NLLEdsqqGEILFKGEPVVWKgesh 78
Cdd:CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIaghpayKILE----GDILFKGESILDL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 79 hrrpaDPKQvlriRTNLSmVFQQFnlwahmtilQNVMEAP-VT-----VLA-----RDRGSVEKAARGYLEKvgIGDKCD 147
Cdd:CHL00131 77 -----EPEE----RAHLG-IFLAF---------QYPIEIPgVSnadflRLAynskrKFQGLPELDPLEFLEI--INEKLK 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 148 VYPAQ-----------LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:CHL00131 136 LVGMDpsflsrnvnegFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-244 |
5.23e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 70.50 E-value: 5.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY----------GSL-----------EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLEDSQqGEI 64
Cdd:COG4586 1 IIEVENLSKTYrvyekepglkGALkglfrreyrevEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMlTGILVPTS-GEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 65 LFKGEpVVWKGESHHRRpadpkqvlrirtNLSMVFQQFN-LWAHMT------ILQNVMEAPVTVLardrgsveKAARGYL 137
Cdd:COG4586 80 RVLGY-VPFKRRKEFAR------------RIGVVFGQRSqLWWDLPaidsfrLLKAIYRIPDAEY--------KKRLDEL 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 138 EKV-GIGDKCDVyPA-QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDL-AGEGRTMIIVTHDMKm 214
Cdd:COG4586 139 VELlDLGELLDT-PVrQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYnRERGTTILLTSHDMD- 216
|
250 260 270
....*....|....*....|....*....|....*.
gi 114544175 215 ahDV---SDHVVFLHQGLIEEQGPPETL---FGAPK 244
Cdd:COG4586 217 --DIealCDRVIVIDHGRIIYDGSLEELkerFGPYK 250
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
26-230 |
1.25e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 69.94 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 26 VDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRR------PADPKQ-----VLRIRTN 94
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRagimlcPEDRKAegiipVHSVADN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 95 LSMVFQQFNLWAHMTIlqnvmeapvtvlarDRGSVEKAARGYLEKVGI---GDKCDVypAQLSGGQQQRAAIARALCMEP 171
Cdd:PRK11288 352 INISARRHHLRAGCLI--------------NNRWEAENADRFIRSLNIktpSREQLI--MNLSGGNQQKAILGRWLSEDM 415
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 172 EALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:PRK11288 416 KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
7-230 |
1.31e-13 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 69.96 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNL---HKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC-NLLEDSQQGEILFKGEPVVWkgeshhRRP 82
Cdd:PRK13549 259 ILEVRNLtawDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLfGAYPGRWEGEIFIDGKPVKI------RNP 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 ADPkqvlrIRTNLSMVFQ---QFNLWAHMTILQNVMEAPVTVLAR----DRGSVEKAARGYLEKVGIGDKCDVYP-AQLS 154
Cdd:PRK13549 333 QQA-----IAQGIAMVPEdrkRDGIVPVMGVGKNITLAALDRFTGgsriDDAAELKTILESIQRLKVKTASPELAiARLS 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
1-239 |
3.06e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 69.38 E-value: 3.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPT-----PVIEIRNLHKAYGS---LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccnlleDSQQGEIlfkgepvv 72
Cdd:PLN03130 603 LPNPPlepglPAISIKNGYFSWDSkaeRPTLSNINLDVPVGSLVAIVGSTGEGKTSLI-------SAMLGEL-------- 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 73 wkgeshhrrPADPKQVLRIRTNLSMVFQQ---FNlwahMTILQNVM-----EAP-------VTVLARDrgsVEKAARGYL 137
Cdd:PLN03130 668 ---------PPRSDASVVIRGTVAYVPQVswiFN----ATVRDNILfgspfDPEryeraidVTALQHD---LDLLPGGDL 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 138 EKvgIGDKcdvyPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVV-KVIKDLAGeGRTMIIVTHDMKMAH 216
Cdd:PLN03130 732 TE--IGER----GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFdKCIKDELR-GKTRVLVTNQLHFLS 804
|
250 260
....*....|....*....|...
gi 114544175 217 DVsDHVVFLHQGLIEEQGPPETL 239
Cdd:PLN03130 805 QV-DRIILVHEGMIKEEGTYEEL 826
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
6-224 |
5.86e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 67.91 E-value: 5.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYG--SLEVLKGvdvTAHRGDVVSLIGSSGSGKSTLLRccnLL---EDSQQGEILFKgEPVVWKgeshhr 80
Cdd:PRK13409 339 TLVEYPDLTKKLGdfSLEVEGG---EIYEGEVIGIVGPNGIGKTTFAK---LLagvLKPDEGEVDPE-LKISYK------ 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rPA--DPKQVLRIRTNLSMVFQQF--NLWAHMTI----LQNVMEAPVTvlardrgsvekaargylekvgigdkcdvypaQ 152
Cdd:PRK13409 406 -PQyiKPDYDGTVEDLLRSITDDLgsSYYKSEIIkplqLERLLDKNVK-------------------------------D 453
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLA-GEGRTMIIVTHDMKMAHDVSDHV-VF 224
Cdd:PRK13409 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAeEREATALVVDHDIYMIDYISDRLmVF 527
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
19-239 |
7.42e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 66.28 E-value: 7.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 19 SLEVLKGvdvTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGEShhrrpADPKQVLRIRTNLSMV 98
Cdd:cd03237 14 TLEVEGG---SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY-----IKADYEGTVRDLLSSI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 99 FQQFNLWAH-----MTILQ--NVMEAPVTvlardrgsvekaargylekvgigdkcdvypaQLSGGQQQRAAIARALCMEP 171
Cdd:cd03237 86 TKDFYTHPYfkteiAKPLQieQILDREVP-------------------------------ELSGGELQRVAIAACLSKDA 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 172 EALLFDEPTSALDPELEQEVVKVIKDLA-GEGRTMIIVTHDMKMAHDVSDHV-VFlhQGLIEEQG---PPETL 239
Cdd:cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAeNNEKTAFVVEHDIIMIDYLADRLiVF--EGEPSVNGvanPPQSL 205
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
8-212 |
9.34e-13 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 67.75 E-value: 9.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS---LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKgepvvwkgESHHRRPAD 84
Cdd:PTZ00265 383 IQFKNVRFHYDTrkdVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN--------DSHNLKDIN 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKQvlrIRTNLSMVFQQFNLWAHmTILQNV---------MEAPVTVLARD----------RGSVEKAARGYL-------- 137
Cdd:PTZ00265 455 LKW---WRSKIGVVSQDPLLFSN-SIKNNIkyslyslkdLEALSNYYNEDgndsqenknkRNSCRAKCAGDLndmsnttd 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 138 -----------------------EKVGIGDKCDVYP-----------AQLSGGQQQRAAIARALCMEPEALLFDEPTSAL 183
Cdd:PTZ00265 531 sneliemrknyqtikdsevvdvsKKVLIHDFVSALPdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSL 610
|
250 260 270
....*....|....*....|....*....|
gi 114544175 184 DPELEQEVVKVIKDLAG-EGRTMIIVTHDM 212
Cdd:PTZ00265 611 DNKSEYLVQKTINNLKGnENRITIIIAHRL 640
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
152-254 |
9.34e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 67.53 E-value: 9.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVSD--HVVFlhqgl 229
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-EGKYVLVVEHDLAVLDYLADnvHIAY----- 285
|
90 100 110
....*....|....*....|....*....|....*..
gi 114544175 230 ieeqGPPetlfGA------PKSER------LRGFLKS 254
Cdd:PRK13409 286 ----GEP----GAygvvskPKGVRvgineyLKGYLPE 314
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
13-242 |
1.47e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.95 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 13 LHKAYG--SLEV-------LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrPA 83
Cdd:PRK10762 249 LDKAPGevRLKVdnlsgpgVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV---------TR 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPKQVL----------RIRTNLSMvfqqfnlwaHMTILQNVMEAPVTVLARDRGSVEKAArgylEKVGIGDKCDVY---- 149
Cdd:PRK10762 320 SPQDGLangivyisedRKRDGLVL---------GMSVKENMSLTALRYFSRAGGSLKHAD----EQQAVSDFIRLFnikt 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 PAQ------LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVV 223
Cdd:PRK10762 387 PSMeqaiglLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL 466
|
250 260
....*....|....*....|....
gi 114544175 224 FLHQGLIE-----EQGPPETLFGA 242
Cdd:PRK10762 467 VMHEGRISgeftrEQATQEKLMAA 490
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
6-230 |
1.91e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 66.59 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLH-KAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRR--- 81
Cdd:COG3845 256 VVLEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRlgv 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 ---PADpkqvlRIRTNLSMvfqQFNLWAHMtILQNVMEAPvtvLAR----DRGSVEKAARGYLEKVGIgdKC---DVYPA 151
Cdd:COG3845 336 ayiPED-----RLGRGLVP---DMSVAENL-ILGRYRRPP---FSRggflDRKAIRAFAEELIEEFDV--RTpgpDTPAR 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMK--MAhdVSDHVVFLHQGL 229
Cdd:COG3845 402 SLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDeiLA--LSDRIAVMYEGR 479
|
.
gi 114544175 230 I 230
Cdd:COG3845 480 I 480
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
7-234 |
2.36e-12 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 64.81 E-value: 2.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ--QGEILFKGEPVVwkgeshhrrPAD 84
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEvtGGTVEFKGKDLL---------ELS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKQvlRIRTNLSMVFQ----------QFNLWAHMTILQNVMEAPvtvlARDRGSVEKAARgylEKVGIGDkcdvYPAQL- 153
Cdd:PRK09580 72 PED--RAGEGIFMAFQypveipgvsnQFFLQTALNAVRSYRGQE----PLDRFDFQDLME---EKIALLK----MPEDLl 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 154 --------SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVS-DHVVF 224
Cdd:PRK09580 139 trsvnvgfSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKpDYVHV 218
|
250
....*....|
gi 114544175 225 LHQGLIEEQG 234
Cdd:PRK09580 219 LYQGRIVKSG 228
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
33-253 |
2.53e-12 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 64.70 E-value: 2.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 33 GDVVSLIGSSGSGKSTLLRccnLLEDSQQGEILFKGEPVVWKGESHHRRPADPKQVL-RIRTNLSMVFQQfnlwahmtiL 111
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALK---ILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFtKLLEGDVKVIVK---------P 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 112 QNVMEAPVTVlardRGSVE-----KAARGYLEKVGigDKCDVYP------AQLSGGQQQRAAIARALCMEPEALLFDEPT 180
Cdd:cd03236 94 QYVDLIPKAV----KGKVGellkkKDERGKLDELV--DQLELRHvldrniDQLSGGELQRVAIAAALARDADFYFFDEPS 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 181 SALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHqglieeqGPPET--LFGAPKSER------LRGFL 252
Cdd:cd03236 168 SYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-------GEPGAygVVTLPKSVReginefLDGYL 240
|
.
gi 114544175 253 K 253
Cdd:cd03236 241 P 241
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
25-210 |
2.88e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 63.67 E-value: 2.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 25 GVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgesHHRRPAdpkqvlrirtnlsmvFQQFNL 104
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI------RRQRDE---------------YHQDLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 105 W-AH-------MTILQNVmeapvTVLARDRGSV-EKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARaLCMEPEAL- 174
Cdd:PRK13538 78 YlGHqpgikteLTALENL-----RFYQRLHGPGdDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALAR-LWLTRAPLw 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 114544175 175 LFDEPTSALDpeleQEVVKVIKDL----AGEGRTMIIVTH 210
Cdd:PRK13538 152 ILDEPFTAID----KQGVARLEALlaqhAEQGGMVILTTH 187
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
13-251 |
3.00e-12 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 64.85 E-value: 3.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 13 LHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCC--NLLEDSQQGEILFKGEpVVWKGESHHRrpADPKQVLR 90
Cdd:PRK13547 7 LHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALagDLTGGGAPRGARVTGD-VTLNGEPLAA--IDAPRLAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 91 IRTNLSMVFQQ-FNLWAHMTIL----QNVMEAPVTVLaRDRGSVEKAargyLEKVGIG--DKCDVypAQLSGGQQQRAAI 163
Cdd:PRK13547 84 LRAVLPQAAQPaFAFSAREIVLlgryPHARRAGALTH-RDGEIAWQA----LALAGATalVGRDV--TTLSGGELARVQF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 164 ARALCM---------EPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMII-VTHDMKMAHDVSDHVVFLHQGLIEEQ 233
Cdd:PRK13547 157 ARVLAQlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLaIVHDPNLAARHADRIAMLADGAIVAH 236
|
250
....*....|....*...
gi 114544175 234 GPPETLFGAPKSERLRGF 251
Cdd:PRK13547 237 GAPADVLTPAHIARCYGF 254
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-211 |
4.70e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 65.34 E-value: 4.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFkGEPVVWKGESHHRRPADPK 86
Cdd:TIGR03719 322 VIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVKLAYVDQSRDALDPN 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QvlrirtnlsmvfqqfNLWAHMTILQNVMEApvtvlardrGSVEKAARGYL-----------EKVGigdkcdvypaQLSG 155
Cdd:TIGR03719 401 K---------------TVWEEISGGLDIIKL---------GKREIPSRAYVgrfnfkgsdqqKKVG----------QLSG 446
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGegrTMIIVTHD 211
Cdd:TIGR03719 447 GERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLNFAG---CAVVISHD 499
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
22-242 |
4.96e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 65.74 E-value: 4.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGeSHHRR------PADPkqVL---RIR 92
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG-LHDLRfkitiiPQDP--VLfsgSLR 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 93 TNLSmVFQQFN---LWAHMTilqnvmeapvtvLARDRGSVEKaargylEKVGIGDKCDVYPAQLSGGQQQRAAIARALCM 169
Cdd:TIGR00957 1378 MNLD-PFSQYSdeeVWWALE------------LAHLKTFVSA------LPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 170 EPEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTHDMKMAHDVSdHVVFLHQGLIEEQGPPETLFGA 242
Cdd:TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRT-QFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQ 1509
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
23-239 |
5.01e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 65.74 E-value: 5.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgeshhrrpadpkqvlrirtNLSMVFQQf 102
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------------------SVAYVPQQ- 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 103 nLWAHMTILQ-NVMEAPVTVLARDRGSVEKAAR-GYLEKVGIGDKCDV--YPAQLSGGQQQRAAIARALCMEPEALLFDE 178
Cdd:TIGR00957 708 -AWIQNDSLReNILFGKALNEKYYQQVLEACALlPDLEILPSGDRTEIgeKGVNLSGGQKQRVSLARAVYSNADIYLFDD 786
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 179 PTSALDPELEQEVVKVIKDLAG--EGRTMIIVTHDMKMAHDVsDHVVFLHQGLIEEQGP-PETL 239
Cdd:TIGR00957 787 PLSAVDAHVGKHIFEHVIGPEGvlKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSyQELL 849
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
2-228 |
5.09e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.05 E-value: 5.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNPTPVIEIRNLHKAYgsleVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLED--SQQGEILFKGEPVVWKGESH 78
Cdd:cd03233 6 WRNISFTTGKGRSKIP----ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKAlANRTEGnvSVEGDIHYNGIPYKEFAEKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 79 HRrpadpkqvlrirtNLSMVFQQFNLWAHMTILQNVMEApvtvlARDRGSveKAARGylekvgigdkcdvypaqLSGGQQ 158
Cdd:cd03233 82 PG-------------EIIYVSEEDVHFPTLTVRETLDFA-----LRCKGN--EFVRG-----------------ISGGER 124
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 159 QRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGR--TMIIVTHDMKMAHDVSDHVVFLHQG 228
Cdd:cd03233 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKttTFVSLYQASDEIYDLFDKVLVLYEG 196
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
148-210 |
5.86e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.17 E-value: 5.86e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 148 VYP--AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlagEGRTMIIVTH 210
Cdd:cd03223 85 IYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITVISVGH 146
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
149-224 |
7.62e-12 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 65.05 E-value: 7.62e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 149 YPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEG-RTMIIVTHDMKMAHDVSDHVVF 224
Cdd:PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAHRIASIKRSDKIVVF 1431
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
8-236 |
7.65e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 62.81 E-value: 7.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS--LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRR---- 81
Cdd:cd03369 7 IEVENLSVRYAPdlPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSslti 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 -PADPkqVL---RIRTNLSmVFQQFNlwahmtilqnvmeapvtvlardrgsvEKAARGYLEKVGIGDkcdvypaQLSGGQ 157
Cdd:cd03369 87 iPQDP--TLfsgTIRSNLD-PFDEYS--------------------------DEEIYGALRVSEGGL-------NLSQGQ 130
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 158 QQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAgEGRTMIIVTHDMKMAHDVsDHVVFLHQGLIEEQGPP 236
Cdd:cd03369 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDHP 207
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
3-213 |
1.17e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 64.65 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 3 NPTPVIEIRNLHKAYG--SLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnlledsqqgeiLFKGEPVVWKGEShhr 80
Cdd:TIGR01257 1933 NKTDILRLNELTKVYSgtSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFK-------------MLTGDTTVTSGDA--- 1996
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rPADPKQVLrirTNLSMVFQQFNLWAHMTILQNVMEAP--VTVLARDRG----SVEKAARGYLEKVGIGDKCDVYPAQLS 154
Cdd:TIGR01257 1997 -TVAGKSIL---TNISDVHQNMGYCPQFDAIDDLLTGRehLYLYARLRGvpaeEIEKVANWSIQSLGLSLYADRLAGTYS 2072
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMK 213
Cdd:TIGR01257 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
5-248 |
1.88e-11 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 62.44 E-value: 1.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEIlfkgepvvwkgeshhRRPAD 84
Cdd:PRK09544 2 TSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------------KRNGK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvLRIrtnlSMVFQQFNLWAHMtilqnvmeaPVTV--LARDRGSVEKAARG-YLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:PRK09544 67 ----LRI----GYVPQKLYLDTTL---------PLTVnrFLRLRPGTKKEDILpALKRVQAGHLIDAPMQKLSGGETQRV 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGE-GRTMIIVTHDMKMAHDVSDHVVFLHQGlIEEQGPPE--- 237
Cdd:PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDLHLVMAKTDEVLCLNHH-ICCSGTPEvvs 208
|
250
....*....|....*..
gi 114544175 238 ------TLFGAPKSERL 248
Cdd:PRK09544 209 lhpefiSMFGPRGAEQL 225
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-258 |
2.86e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 63.26 E-value: 2.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 21 EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccNLLE--DSQQGEilfkgepvVWKGEShhrrpadpkqvlrirtnLSMV 98
Cdd:PTZ00243 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQ--SLLSqfEISEGR--------VWAERS-----------------IAYV 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 99 FQQfnLWahmtilqnVMEAPVtvlardRGSV-----EKAAR------------------GYLEkVGIGDKcdvyPAQLSG 155
Cdd:PTZ00243 727 PQQ--AW--------IMNATV------RGNIlffdeEDAARladavrvsqleadlaqlgGGLE-TEIGEK----GVNLSG 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMkmaHDVS--DHVVFLHQGLIEEQ 233
Cdd:PTZ00243 786 GQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV---HVVPraDYVVALGDGRVEFS 862
|
250 260
....*....|....*....|....*
gi 114544175 234 GPPETLFGAPKSERLRGFLKSTTHA 258
Cdd:PTZ00243 863 GSSADFMRTSLYATLAAELKENKDS 887
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
4-231 |
3.26e-11 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 62.88 E-value: 3.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 4 PTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEI-LFKGepvvwkgeshhrrp 82
Cdd:PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIgLAKG-------------- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 adpkqvlrIRTNLsmvFQQfnlwaHMTILQNVMEAPVTVLARDRGSV-EKAARGYLEKVGI-GDKCDVYPAQLSGGQQQR 160
Cdd:PRK10636 375 --------IKLGY---FAQ-----HQLEFLRADESPLQHLARLAPQElEQKLRDYLGGFGFqGDKVTEETRRFSGGEKAR 438
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGegrTMIIVTHDMKMAHDVSDHVVFLHQGLIE 231
Cdd:PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG---ALVVVSHDRHLLRSTTDDLYLVHDGKVE 506
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
6-224 |
4.00e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.49 E-value: 4.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYG--SLEVLKGvdvTAHRGDVVSLIGSSGSGKSTLLRccnLL---EDSQQGEIlFKGEPVVWKgeshhr 80
Cdd:COG1245 340 TLVEYPDLTKSYGgfSLEVEGG---EIREGEVLGIVGPNGIGKTTFAK---ILagvLKPDEGEV-DEDLKISYK------ 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 rpadPKqvlRIRTNLSMVFQQFnlwahmtiLQNVMEAPVTvlardrGSVEKAArgYLEKVGIGDKCDVYPAQLSGGQQQR 160
Cdd:COG1245 407 ----PQ---YISPDYDGTVEEF--------LRSANTDDFG------SSYYKTE--IIKPLGLEKLLDKNVKDLSGGELQR 463
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLA-GEGRTMIIVTHDMKMaHD-VSDHV-VF 224
Cdd:COG1245 464 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAeNRGKTAMVVDHDIYL-IDyISDRLmVF 529
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
8-215 |
7.67e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.89 E-value: 7.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCN---LLEDsqqGEILFKGEPVVwkgeshHRRPAD 84
Cdd:PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNgevLLDD---GRIIYEQDLIV------ARLQQD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 PKqvlriRTNLSMVF---------QQFNLWAHMTILQNVMEAP----VTVLARDRGSVEKAARGYLEKvGIGDKC----- 146
Cdd:PRK11147 75 PP-----RNVEGTVYdfvaegieeQAEYLKRYHDISHLVETDPseknLNELAKLQEQLDHHNLWQLEN-RINEVLaqlgl 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 147 --DVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPE----LEQevvkVIKDLAGegrTMIIVTHD----MKMA 215
Cdd:PRK11147 149 dpDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIEtiewLEG----FLKTFQG---SIIFISHDrsfiRNMA 220
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
23-225 |
8.04e-11 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 59.26 E-value: 8.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnlledsqqgEILFKgepvvwkgeSHHRRPADPKQVLRiRTNLSMVFQqf 102
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------EGLYA---------SGKARLISFLPKFS-RNKLIFIDQ-- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 103 nlwahmtiLQNVMEAPVtvlardrgsvekaarGYLEkvgIGDKCdvypAQLSGGQQQRAAIARALCMEPEALLF--DEPT 180
Cdd:cd03238 68 --------LQFLIDVGL---------------GYLT---LGQKL----STLSGGELQRVKLASELFSEPPGTLFilDEPS 117
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 114544175 181 SALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAhDVSDHVVFL 225
Cdd:cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDF 161
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
8-239 |
2.38e-10 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 59.75 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKStllrccnlledsqQGEIlfkgePVVWKGESHHRRP----- 82
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**-------------RGAL-----PAHV*GPDAGRRPwrf*t 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 --ADPKQVLRI-----------------RTNLSMVFQQFNLwahmtilqnvmeapvtvlarDRGSVEKAARGYLEKVGIG 143
Cdd:NF000106 76 wcANRRALRRTig*hrpvr*grresfsgRENLYMIGR*LDL--------------------SRKDARARADELLERFSLT 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 144 DKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVV 223
Cdd:NF000106 136 EAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELT 215
|
250
....*....|....*.
gi 114544175 224 FLHQGLIEEQGPPETL 239
Cdd:NF000106 216 VIDRGRVIADGKVDEL 231
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
8-213 |
2.74e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 58.50 E-value: 2.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGS-LEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccnlledSQQGEILFKGEPVVWkgeSHHRRPADPK 86
Cdd:cd03290 1 VQVTNGYFSWGSgLATLSNINIRIPTGQLTMIVGQVGCGKSSLLL-------AILGEMQTLEGKVHW---SNKNESEPSF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWA-HMTILQNV-MEAPVTVlARDRGSVEKAA-RGYLEKVGIGDKCDV--YPAQLSGGQQQRA 161
Cdd:cd03290 71 EATRSRNRYSVAYAAQKPWLlNATVEENItFGSPFNK-QRYKAVTDACSlQPDIDLLPFGDQTEIgeRGINLSGGQRQRI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 114544175 162 AIARALCMEPEALLFDEPTSALDPELEQEVVK--VIKDLAGEGRTMIIVTHDMK 213
Cdd:cd03290 150 CVARALYQNTNIVFLDDPFSALDIHLSDHLMQegILKFLQDDKRTLVLVTHKLQ 203
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
153-254 |
2.78e-10 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 57.97 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEG-RTMIIVTHDMKMAHDVSDHVVflhqgLIE 231
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGkKTALVVEHDLAVLDYLSDRIH-----VFE 146
|
90 100
....*....|....*....|....*
gi 114544175 232 EQGPPETLFGAPKSER--LRGFLKS 254
Cdd:cd03222 147 GEPGVYGIASQPKGTRegINRFLRG 171
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
18-228 |
3.06e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 58.02 E-value: 3.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 18 GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQ--QGEILFKGEPvvwKGESHHRRPADPKQvlrirtnl 95
Cdd:cd03232 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGviTGEILINGRP---LDKNFQRSTGYVEQ-------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 96 smvfqqfnlwahmtilQNVMEAPVTVlardRGSVEKAA--RGylekvgigdkcdvypaqLSGGQQQRAAIARALCMEPEA 173
Cdd:cd03232 87 ----------------QDVHSPNLTV----REALRFSAllRG-----------------LSVEQRKRLTIGVELAAKPSI 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 174 LLFDEPTSALDPELEQEVVKVIKDLAGEGRTmIIVThdmkmAHDVS-------DHVVFLHQG 228
Cdd:cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQA-ILCT-----IHQPSasifekfDRLLLLKRG 185
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
2-240 |
5.72e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.60 E-value: 5.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 2 PNP-----TPVIEIRNLHKAYGSL---EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccnlleDSQQGEIlfkgepvvw 73
Cdd:PLN03232 604 QNPplqpgAPAISIKNGYFSWDSKtskPTLSDINLEIPVGSLVAIVGGTGEGKTSLI-------SAMLGEL--------- 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 74 kgeshhrRPADPKQVLrIRTNLSMVFQQ---FNlwahMTILQNVM------------EAPVTVLARD------RGSVEKA 132
Cdd:PLN03232 668 -------SHAETSSVV-IRGSVAYVPQVswiFN----ATVRENILfgsdfeserywrAIDVTALQHDldllpgRDLTEIG 735
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 133 ARGylekvgigdkcdvypAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDM 212
Cdd:PLN03232 736 ERG---------------VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800
|
250 260
....*....|....*....|....*...
gi 114544175 213 KMAHDVsDHVVFLHQGLIEEQGPPETLF 240
Cdd:PLN03232 801 HFLPLM-DRIILVSEGMIKEEGTFAELS 827
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
7-211 |
9.38e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 58.42 E-value: 9.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCcnLLED--SQQGEIlfkgePVVWKGE----SHHR 80
Cdd:PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKL--MLGQlqADSGRI-----HCGTKLEvayfDQHR 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 81 RPADPKQvlrirtnlsmvfqqfnlwahmTILQNVMEAP--VTVLARDRgsvekAARGYLEKVGIGDKCDVYPAQ-LSGGQ 157
Cdd:PRK11147 392 AELDPEK---------------------TVMDNLAEGKqeVMVNGRPR-----HVLGYLQDFLFHPKRAMTPVKaLSGGE 445
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 158 QQRAAIARaLCMEPEALL-FDEPTSALDPE----LEQevvkVIKDLAGegrTMIIVTHD 211
Cdd:PRK11147 446 RNRLLLAR-LFLKPSNLLiLDEPTNDLDVEtlelLEE----LLDSYQG---TVLLVSHD 496
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-211 |
1.13e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.02 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAY-GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILF-KG--------EPVVwkGE 76
Cdd:TIGR03719 4 IYTMNRVSKVVpPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPqPGikvgylpqEPQL--DP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 77 SHHRRP------ADPKQVLRIRTNLSMVF----QQFN-LWAHMTILQNVMEApvtVLARDRGS-VEKAARGYlekvgigd 144
Cdd:TIGR03719 82 TKTVREnveegvAEIKDALDRFNEISAKYaepdADFDkLAAEQAELQEIIDA---ADAWDLDSqLEIAMDAL-------- 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 145 KC---DVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPE----LEQEvvkvIKDLAGegrTMIIVTHD 211
Cdd:TIGR03719 151 RCppwDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAEsvawLERH----LQEYPG---TVVAVTHD 217
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
6-185 |
1.40e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 58.21 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 6 PVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKST---LLrcCNLLEDSQqGEILFKGEPVvwkgeshhrrp 82
Cdd:NF033858 265 PAIEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTtmkML--TGLLPASE-GEAWLFGQPV----------- 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 83 aDPKQvLRIRTNLSMVFQQFNLWAHMTILQN-VMEAPVTVLARDRgsVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRA 161
Cdd:NF033858 331 -DAGD-IATRRRVGYMSQAFSLYGELTVRQNlELHARLFHLPAAE--IAARVAEMLERFDLADVADALPDSLPLGIRQRL 406
|
170 180
....*....|....*....|....
gi 114544175 162 AIARALCMEPEALLFDEPTSALDP 185
Cdd:NF033858 407 SLAVAVIHKPELLILDEPTSGVDP 430
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
23-215 |
1.63e-09 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 55.44 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLledsqqgeILFkgepvvwkGESHHRRPADPKQVLRIRTNLSMVFQQF 102
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGL--------ALG--------GAQSATRRRSGVKAGCIVAAVSAELIFT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 103 NLwahmtilqnvmeapvtvlardrgsvekaargylekvgigdkcdvypaQLSGGQQQRAAIARAL----CMEPEALLFDE 178
Cdd:cd03227 75 RL-----------------------------------------------QLSGGEKELSALALILalasLKPRPLYILDE 107
|
170 180 190
....*....|....*....|....*....|....*..
gi 114544175 179 PTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMA 215
Cdd:cd03227 108 IDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELA 144
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-230 |
2.15e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 57.37 E-value: 2.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 5 TPVIEIRNLhkaygSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEpvvwkgESHHRRPAD 84
Cdd:PRK15439 266 APVLTVEDL-----TGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGK------EINALSTAQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 85 pkqvlRIRTNLsmVF-----QQFNLWAHMTILQNVMEAPVTVL------ARDRGSVEkaarGYLEKVGIgdKCDvYPAQ- 152
Cdd:PRK15439 335 -----RLARGL--VYlpedrQSSGLYLDAPLAWNVCALTHNRRgfwikpARENAVLE----RYRRALNI--KFN-HAEQa 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 ---LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGL 229
Cdd:PRK15439 401 artLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480
|
.
gi 114544175 230 I 230
Cdd:PRK15439 481 I 481
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
153-230 |
2.77e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 57.05 E-value: 2.77e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLI 230
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1-210 |
7.94e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 55.41 E-value: 7.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 1 MPNPTPVIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLE-DSQQGE----ILF-----KGEp 70
Cdd:PRK10938 254 LPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL---SLITgDHPQGYsndlTLFgrrrgSGE- 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 71 VVWKGESH-----------HRRPADPKQVLrirtnLSMVFQQFNLWahmtilQNVMEApvtvlardrgsVEKAARGYLEK 139
Cdd:PRK10938 330 TIWDIKKHigyvssslhldYRVSTSVRNVI-----LSGFFDSIGIY------QAVSDR-----------QQKLAQQWLDI 387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 140 VGIGDKCDVYPAQ-LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRT-MIIVTH 210
Cdd:PRK10938 388 LGIDKRTADAPFHsLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETqLLFVSH 460
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
22-228 |
2.57e-08 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 53.32 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccnlledsqqgeILFKGEPVVWKGESHHRRpadpkqvlriRTNLSmvfQQ 101
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLL-------------MLILGELEPSEGKIKHSG----------RISFS---SQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 FNLWAHMTILQNVMeAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQ----LSGGQQQRAAIARALCMEPEALLFD 177
Cdd:cd03291 106 FSWIMPGTIKENII-FGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEggitLSGGQRARISLARAVYKDADLYLLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 114544175 178 EPTSALDPELEQEVVK--VIKDLAgeGRTMIIVTHdmKMAH-DVSDHVVFLHQG 228
Cdd:cd03291 185 SPFGYLDVFTEKEIFEscVCKLMA--NKTRILVTS--KMEHlKKADKILILHEG 234
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
8-240 |
3.58e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.83 E-value: 3.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRR---- 81
Cdd:PLN03232 1235 IKFEDVHLRYrpGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRvlsi 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 82 -PADPkqVL---RIRTNLSmVFQQFN---LWAHMTilqnvmeapvtvLARDRGSVEKAARGYLEKVGIGDKcdvypaQLS 154
Cdd:PLN03232 1315 iPQSP--VLfsgTVRFNID-PFSEHNdadLWEALE------------RAHIKDVIDRNPFGLDAEVSEGGE------NFS 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 155 GGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlagEGR--TMIIVTHDMKMAHDVsDHVVFLHQGLIEE 232
Cdd:PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE---EFKscTMLVIAHRLNTIIDC-DKILVLSSGQVLE 1449
|
....*...
gi 114544175 233 QGPPETLF 240
Cdd:PLN03232 1450 YDSPQELL 1457
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
151-214 |
3.79e-08 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 54.06 E-value: 3.79e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 151 AQLSGGQQQRAAIARALCMEPEALLF--DEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKM 214
Cdd:PRK00635 475 ATLSGGEQERTALAKHLGAELIGITYilDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQM 540
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
22-228 |
7.55e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 52.99 E-value: 7.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccnlledsqqgeILFKGEPVVWKGE-SHHRRPADPKQVL-----RIRTNL 95
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLL-------------MMIMGELEPSEGKiKHSGRISFSPQTSwimpgTIKDNI 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 96 --SMVFQQFNLWAHMTILQnvMEAPVTVLARDRGSVekaargyLEKVGIgdkcdvypaQLSGGQQQRAAIARALCMEPEA 173
Cdd:TIGR01271 508 ifGLSYDEYRYTSVIKACQ--LEEDIALFPEKDKTV-------LGEGGI---------TLSGGQRARISLARAVYKDADL 569
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 174 LLFDEPTSALDPELEQEVVK--VIKDLAgeGRTMIIVTHdmKMAH-DVSDHVVFLHQG 228
Cdd:TIGR01271 570 YLLDSPFTHLDVVTEKEIFEscLCKLMS--NKTRILVTS--KLEHlKKADKILLLHEG 623
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
151-211 |
8.47e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 52.43 E-value: 8.47e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 151 AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPE----LEQEvvkvIKDLAGegrTMIIVTHD 211
Cdd:PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAEsvawLEQF----LHDYPG---TVVAVTHD 219
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
152-254 |
1.05e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 52.55 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPE----LEQEVVKVIKdlagegrTMIIVTHDMKMAHDVSDHVVFLH- 226
Cdd:PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHavlwLETYLLKWPK-------TFIVVSHAREFLNTVVTDILHLHg 416
|
90 100
....*....|....*....|....*...
gi 114544175 227 QGLIEEQGPPETlFGAPKSERLRGFLKS 254
Cdd:PLN03073 417 QKLVTYKGDYDT-FERTREEQLKNQQKA 443
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
153-223 |
1.20e-07 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 51.10 E-value: 1.20e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 153 LSGGQQQRAAIARALCMEPEALL--FDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMK-MAHdvSDHVV 223
Cdd:cd03270 138 LSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDtIRA--ADHVI 209
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-239 |
1.78e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.05 E-value: 1.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGESHHRR-----PADPkqVL---RIRT 93
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKvlgiiPQAP--VLfsgTVRF 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 94 NLSmVFQQFN---LW-----AHmtiLQNVmeapvtvlardrgsVEKAARGYLEKVGIGDKcdvypaQLSGGQQQRAAIAR 165
Cdd:PLN03130 1332 NLD-PFNEHNdadLWeslerAH---LKDV--------------IRRNSLGLDAEVSEAGE------NFSVGQRQLLSLAR 1387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 166 ALCMEPEALLFDEPTSALDPELEQEVVKVIKDlagEGR--TMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGPPETL 239
Cdd:PLN03130 1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIRE---EFKscTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENL 1459
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
22-245 |
2.57e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 51.32 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVWKGeshhrrpadpkqvLR-IRTNLSMVFQ 100
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG-------------LReLRRQFSMIPQ 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 101 QFNLWAHmTILQNV---MEA-PVTVLARDR--GSVEKAARgylEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEA- 173
Cdd:PTZ00243 1392 DPVLFDG-TVRQNVdpfLEAsSAEVWAALElvGLRERVAS---ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGf 1467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 174 LLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTHDMkmaHDVS--DHVVFLHQGLIEEQGPPETLFGAPKS 245
Cdd:PTZ00243 1468 ILMDEATANIDPALDRQIQATVMS-AFSAYTVITIAHRL---HTVAqyDKIIVMDHGAVAEMGSPRELVMNRQS 1537
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
7-211 |
4.31e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.50 E-value: 4.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFkGEPVVWKGESHHRRPADPK 86
Cdd:PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVKLAYVDQSRDALDPN 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QvlrirtnlsmvfqqfNLWAHMTILQNVMEApvtvlardrGSVEKAARGYL-----------EKVGigdkcdvypaQLSG 155
Cdd:PRK11819 403 K---------------TVWEEISGGLDIIKV---------GNREIPSRAYVgrfnfkggdqqKKVG----------VLSG 448
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 156 GQQQRAAIARALCMEPEALLFDEPTSALDPE----LEQevvkVIKDLAGegrTMIIVTHD 211
Cdd:PRK11819 449 GERNRLHLAKTLKQGGNVLLLDEPTNDLDVEtlraLEE----ALLEFPG---CAVVISHD 501
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
150-223 |
6.08e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 48.76 E-value: 6.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 PAQLSGGQQQ------RAAIARALCMEPEALLFDEPTSALDPE-LEQEVVKVIKDLAGEG-RTMIIVTHDMKMAhDVSDH 221
Cdd:cd03240 113 RGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEEnIEESLAEIIEERKSQKnFQLIVITHDEELV-DAADH 191
|
..
gi 114544175 222 VV 223
Cdd:cd03240 192 IY 193
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
23-253 |
7.38e-07 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 49.04 E-value: 7.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 23 LKGVDVTAHRGDVVSLIGSSGSGKSTLlrcCNLLEDS---QQGEILFKGEpvvwkgeshhrrpadpKQVLRIRTNLSmvf 99
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTL---SNIIGGSlspTVGKVDRNGE----------------VSVIAISAGLS--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 100 qqfnlwAHMTILQNVmEAPVTVLARDRGSVEKAARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEP 179
Cdd:PRK13546 98 ------GQLTGIENI-EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 180 TSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETLFgaPKSERlrgFLK 253
Cdd:PRK13546 171 LSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL--PKYEA---FLN 239
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
8-210 |
1.16e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 48.70 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAY--GSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRC-CNLLedSQQGEILFKGepVVWKGESHHR-RPA 83
Cdd:cd03289 3 MTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAfLRLL--NTEGDIQIDG--VSWNSVPLQKwRKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 ---DPKQVLRIRTNLSMVFQQFNLWAHMTILqnvmeapvtvlardrgsveKAArgylEKVGIGDKCDVYPAQL------- 153
Cdd:cd03289 79 fgvIPQKVFIFSGTFRKNLDPYGKWSDEEIW-------------------KVA----EEVGLKSVIEQFPGQLdfvlvdg 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 154 ----SGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTH 210
Cdd:cd03289 136 gcvlSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEH 195
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
148-211 |
1.29e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 48.54 E-value: 1.29e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114544175 148 VYPAQLSGGQQQ---RAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHD 211
Cdd:pfam13304 232 LPAFELSDGTKRllaLLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHS 298
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
7-212 |
2.05e-06 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 48.25 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNL---HKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRccNLLEDSQ----QGEILFKGEPVvwkgeshh 79
Cdd:NF040905 257 VFEVKNWtvyHPLHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAM--SVFGRSYgrniSGTVFKDGKEV-------- 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 80 rrpaDPKQVLR-IRTNLSMVFQ---QFNLWAHMTILQNVMEAPVTVLAR----DRGSVEKAARGYLEKVGIgdKC-DVYP 150
Cdd:NF040905 327 ----DVSTVSDaIDAGLAYVTEdrkGYGLNLIDDIKRNITLANLGKVSRrgviDENEEIKVAEEYRKKMNI--KTpSVFQ 400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114544175 151 --AQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDM 212
Cdd:NF040905 401 kvGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSEL 464
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
22-210 |
2.24e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.57 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCcnlLEDSQQGEILFKGEPVVwkgeshHRRPADpKQVLRIrtnlSMVFQQ 101
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGVITGGDRLV------NGRPLD-SSFQRS----IGYVQQ 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 fnlwahmtilQNVMEAPVTVlardRGSVEKAAR-------------GYLEKV-----------------GIGdkcdvypa 151
Cdd:TIGR00956 844 ----------QDLHLPTSTV----RESLRFSAYlrqpksvsksekmEYVEEVikllemesyadavvgvpGEG-------- 901
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 152 qLSGGQQQRAAIARALCMEPEALLF-DEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:TIGR00956 902 -LNVEQRKRLTIGVELVAKPKLLLFlDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
8-211 |
2.41e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.96 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCcnLLEDSQQGEilfkGEpVVWkGESHH--RRPADP 85
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRT--LVGELEPDS----GT-VKW-SENANigYYAQDH 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLsmvFQQFNLWahmtilqnvmeapvtvlaRDRGSVEKAARGYLEKV-----GIGDKCDVypaqLSGGQQQR 160
Cdd:PRK15064 392 AYDFENDLTL---FDWMSQW------------------RQEGDDEQAVRGTLGRLlfsqdDIKKSVKV----LSGGEKGR 446
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGegrTMIIVTHD 211
Cdd:PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEG---TLIFVSHD 494
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
27-239 |
2.77e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 47.70 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 27 DVTAHRGDVVSLIGSSGSGKSTLLRccnlledSQQGE-ILFKGEPvvwkgESHHRRPAdpkqvlrirtNLSmvFQQfnlw 105
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALAR-------ALAGElPLLSGER-----QSQFSHIT----------RLS--FEQ---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 106 ahmtiLQNVMEAP--------VTVLARDRG---------SVEKAAR--GYLEKVGIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:PRK10938 75 -----LQKLVSDEwqrnntdmLSPGEDDTGrttaeiiqdEVKDPARceQLAQQFGITALLDRRFKYLSTGETRKTLLCQA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHDVSDHVVFLHQGLIEEQGPPETL 239
Cdd:PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
8-211 |
2.80e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 46.93 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSLEVlkgvDVTAHrgdVVSLIGSSGSGKSTLLRCCNLL-------EDSQQGEILFKGEPVVW------- 73
Cdd:COG0419 5 LRLENFRSYRDTETI----DFDDG---LNLIVGPNGAGKSTILEAIRYAlygkarsRSKLRSDLINVGSEEASvelefeh 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 74 ----------KGESHHRRPADPKQVLRIrtnlsmVFQQFNLWAHMTILQNVME--APVTVLARDRGSVEKAARGYLEKV- 140
Cdd:COG0419 78 ggkryrierrQGEFAEFLEAKPSERKEA------LKRLLGLEIYEELKERLKEleEALESALEELAELQKLKQEILAQLs 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114544175 141 GIGDkcdvyPAQLSGGQQQRAAIARALcmepeALLFDepTSALDPELEQEVVKVIKDLAgegrtmiIVTHD 211
Cdd:COG0419 152 GLDP-----IETLSGGERLRLALADLL-----SLILD--FGSLDEERLERLLDALEELA-------IITHV 203
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
8-240 |
8.40e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 45.67 E-value: 8.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 8 IEIRNLHKAYGSL--EVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVVwkgeshhrrpADP 85
Cdd:cd03288 20 IKIHDLCVRYENNlkPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS----------KLP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRtnLSMVFQ---------QFNLWAHMTILQNVMEAPVTVlARDRGSVEKAARGYLEKVGIGDKcdvypaQLSGG 156
Cdd:cd03288 90 LHTLRSR--LSIILQdpilfsgsiRFNLDPECKCTDDRLWEALEI-AQLKNMVKSLPGGLDAVVTEGGE------NFSVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 157 QQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDlAGEGRTMIIVTHDMKMAHDvSDHVVFLHQGLIEEQGPP 236
Cdd:cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTP 238
|
....
gi 114544175 237 ETLF 240
Cdd:cd03288 239 ENLL 242
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
32-213 |
1.16e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.29 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 32 RGDVVSLIGSSGSGKSTLLRC-CNLLEDSQQGEILFKGEPvvwkgeshhrrpadpkqvlrirtnlsmvfqqfnlwahmti 110
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARAlARELGPPGGGVIYIDGED---------------------------------------- 40
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 111 lqnvmeapvtvlardrgsvekaARGYLEKVGIGDKCDVYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQE 190
Cdd:smart00382 41 ----------------------ILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL 98
|
170 180
....*....|....*....|....*....
gi 114544175 191 VVKVIKDLAG------EGRTMIIVTHDMK 213
Cdd:smart00382 99 LLLLEELRLLlllkseKNLTVILTTNDEK 127
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
153-255 |
1.36e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 45.98 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCM---EPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAhDVSDHVVflhqgl 229
Cdd:PRK00635 810 LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVL------ 882
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 114544175 230 ieEQGP--------------PETLF--GAPKSERLRGFLKST 255
Cdd:PRK00635 883 --ELGPeggnlggyllascsPEELIhlHTPTAKALRPYLSSP 922
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
153-210 |
1.42e-05 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 45.90 E-value: 1.42e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLageGRTMIIVTH 210
Cdd:TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSH 637
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-185 |
1.92e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.50 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLrccNLLEDS---QQGEILFKGEPVvwkGESHHRRPA 83
Cdd:NF033858 1 VARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLL---SLIAGArkiQQGRVEVLGGDM---ADARHRRAV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 84 DPK-----QVL-RirtnlsmvfqqfNLWAHMTILQNvmeapVTVLAR----DRGsvEKAAR--GYLEKVGIGDKCDvYPA 151
Cdd:NF033858 75 CPRiaympQGLgK------------NLYPTLSVFEN-----LDFFGRlfgqDAA--ERRRRidELLRATGLAPFAD-RPA 134
|
170 180 190
....*....|....*....|....*....|....*
gi 114544175 152 -QLSGGQQQRAAIARALCMEPEALLFDEPTSALDP 185
Cdd:NF033858 135 gKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDP 169
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
153-239 |
2.14e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.39 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCME---PEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMkmahDV---SDHVVFL- 225
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNL----DViktADYIIDLg 905
|
90
....*....|....*....
gi 114544175 226 -----HQGLIEEQGPPETL 239
Cdd:TIGR00630 906 peggdGGGTVVASGTPEEV 924
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
7-221 |
3.17e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 43.79 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 7 VIEIRNLHKAYGSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGEPVvwkgeshhrrpadPK 86
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-------------KK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 87 QVLRIRTNLSMVFQQFNLWAHMTILQNVMEApvtvLARDRGSVEKAARGYLEKvgIGDKCDVYPAQLSGGQQQRAAIARA 166
Cdd:PRK13540 68 DLCTYQKQLCFVGHRSGINPYLTLRENCLYD----IHFSPGAVGITELCRLFS--LEHLIDYPCGLLSSGQKRQVALLRL 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 114544175 167 LCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDmKMAHDVSDH 221
Cdd:PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ-DLPLNKADY 195
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
153-245 |
3.55e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 44.62 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLF--DEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMKMAHdVSDHVVFL----- 225
Cdd:TIGR00630 489 LSGGEAQRIRLATQIGSGLTGVLYvlDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHDEDTIR-AADYVIDIgpgag 567
|
90 100
....*....|....*....|.
gi 114544175 226 -HQGLIEEQGPPETLFGAPKS 245
Cdd:TIGR00630 568 eHGGEVVASGTPEEILANPDS 588
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
22-186 |
4.88e-05 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 43.30 E-value: 4.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 22 VLKGVDVTAHRGDVVSLIGSSGSGKSTLLRCCNLLEDSQQGEILFKGepvvwkgesHHRRPADPKQVLRIRTNLSmvfqq 101
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG---------KTATRGDRSRFMAYLGHLP----- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 102 fNLWAHMTILQNVMeapvtVLARDRGSVEKAARG-YLEKVGIGDKCDVYPAQLSGGQQQRAAIARaLCMEPEAL-LFDEP 179
Cdd:PRK13543 92 -GLKADLSTLENLH-----FLCGLHGRRAKQMPGsALAIVGLAGYEDTLVRQLSAGQKKRLALAR-LWLSPAPLwLLDEP 164
|
....*..
gi 114544175 180 TSALDPE 186
Cdd:PRK13543 165 YANLDLE 171
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
17-232 |
5.62e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 44.01 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 17 YGSLEVLKGVDV-------TAHRGDVVSLIGSSGSGKSTLLrccNLLED---SQQGEILFKGE-PVVWkgeSHHRRPADP 85
Cdd:PRK10636 4 FSSLQIRRGVRVlldnataTINPGQKVGLVGKNGCGKSTLL---ALLKNeisADGGSYTFPGNwQLAW---VNQETPALP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 86 KQVLRIRTNLSMVFQQFNLWAHMTILQNVMEAPVTVLAR----DRGSVEKAARGYLEKVGIGDKCDVYPAQ-LSGGQQQR 160
Cdd:PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKldaiDAWTIRSRAASLLHGLGFSNEQLERPVSdFSGGWRMR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 161 AAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGegrTMIIVTHDMKMAHDVSDHVVFLHQGLIEE 232
Cdd:PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG---TLILISHDRDFLDPIVDKIIHIEQQSLFE 226
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
153-236 |
1.12e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 42.60 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 153 LSGGQQQRAAIARALCME---PEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHDMkmahDV---SDHVVFL- 225
Cdd:cd03271 170 LSGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL----DVikcADWIIDLg 245
|
90
....*....|....*.
gi 114544175 226 -----HQGLIEEQGPP 236
Cdd:cd03271 246 peggdGGGQVVASGTP 261
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
150-223 |
1.78e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 150 PAQLSGGQQQ------RAAIAR--ALCMEPEA----LLFDEPTSALDPELEQEVVKVIKDLAGEG-RTMIIVTHDMKMAh 216
Cdd:PRK02224 779 PEQLSGGERAlfnlslRCAIYRllAEGIEGDAplppLILDEPTVFLDSGHVSQLVDLVESMRRLGvEQIVVVSHDDELV- 857
|
....*..
gi 114544175 217 DVSDHVV 223
Cdd:PRK02224 858 GAADDLV 864
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
9-235 |
2.83e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 42.02 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 9 EIRNLHKAYgSLEVLKGVDVTAHRGDVVSLIGSSGSGKSTLLR--CCNL-----LEDSQ-------QGEIL--FKGEpVV 72
Cdd:TIGR00956 64 KLKKFRDTK-TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKtiASNTdgfhiGVEGVitydgitPEEIKkhYRGD-VV 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 73 WKGESHHRRPadpkqvlrirtNLSmVFQQFNLWAHMTILQN-VMEAPVTVLARDRGSVEKAARG----YLEKVGigdkcD 147
Cdd:TIGR00956 142 YNAETDVHFP-----------HLT-VGETLDFAARCKTPQNrPDGVSREEYAKHIADVYMATYGlshtRNTKVG-----N 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 148 VYPAQLSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVT--HDMKMAHDVSDHVVFL 225
Cdd:TIGR00956 205 DFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAiyQCSQDAYELFDKVIVL 284
|
250
....*....|
gi 114544175 226 HQGLIEEQGP 235
Cdd:TIGR00956 285 YEGYQIYFGP 294
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
153-210 |
4.05e-04 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 41.37 E-value: 4.05e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 114544175 153 LSGGQQQRAAIARALCMEPEALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
160-211 |
7.58e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 40.26 E-value: 7.58e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 114544175 160 RAAIARALCMEPEALLFDEPTSALDPE----LEQEvvkvikdLAGEGRTMIIVTHD 211
Cdd:PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINtirwLEDV-------LNERNSTMIIISHD 211
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
127-211 |
1.39e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 39.84 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 127 GSVEKAARGYLEKVGIGDKCDVYPA-QLSGGQQQRAAIARALCMEPEALLFDEPTSALDPEleqEVVKVIKDLAGEGRTM 205
Cdd:PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD---AVEALIQGLVLFQGGV 677
|
....*.
gi 114544175 206 IIVTHD 211
Cdd:PLN03073 678 LMVSHD 683
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
153-211 |
2.00e-03 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 38.40 E-value: 2.00e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 114544175 153 LSGGQQQRAAIARALCMEP----------EALLFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTHD 211
Cdd:cd03279 124 LSGGETFLASLSLALALSEvlqnrggarlEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192
|
|
| ABC_SMC3_euk |
cd03272 |
ATP-binding cassette domain of eukaryotic SMC3 proteins; The structural maintenance of ... |
152-209 |
3.53e-03 |
|
ATP-binding cassette domain of eukaryotic SMC3 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213239 [Multi-domain] Cd Length: 243 Bit Score: 38.01 E-value: 3.53e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114544175 152 QLSGGQQQRAAIARALCM---EPEAL-LFDEPTSALDPELEQEVVKVIKDLAGEgrTMIIVT 209
Cdd:cd03272 158 QLSGGQKSLVALALIFAIqkcDPAPFyLFDEIDAALDAQYRTAVANMIKELSDG--AQFITT 217
|
|
| COG3910 |
COG3910 |
Predicted ATPase [General function prediction only]; |
169-210 |
3.57e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 37.82 E-value: 3.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 114544175 169 MEPEAL-LFDEPTSALDPELEQEVVKVIKDLAGEGRTMIIVTH 210
Cdd:COG3910 150 FRGNGLyLLDEPEAALSPSRQLALLALIHDLVREGSQFIIATH 192
|
|
| ABC_ATPase |
pfam09818 |
ATPase of the ABC class; This is the C-terminal ATPase domain from bacterial ABC class ATPases. ... |
154-227 |
4.04e-03 |
|
ATPase of the ABC class; This is the C-terminal ATPase domain from bacterial ABC class ATPases. This entry also includes MRB1590 from Trypanosoma brucei brucei has a central ATPase domain homologous to this domain.
Pssm-ID: 462914 Cd Length: 282 Bit Score: 37.96 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114544175 154 SGGQQQRAAIARALCMEPEALLFDEPTSA--------LDPEL---EQEVVKVIKDLAGE-----GRTMIIVTHDMKMAHD 217
Cdd:pfam09818 159 SGSTSQAANIMEALEAGASLLLIDEDTSAtnfmirdeRMQALvskDKEPITPFVDRVRSlyddlGVSTILVVGGSGDYLD 238
|
90
....*....|
gi 114544175 218 VSDHVVFLHQ 227
Cdd:pfam09818 239 VADTVILMDE 248
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
25-50 |
5.93e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 34.50 E-value: 5.93e-03
10 20
....*....|....*....|....*.
gi 114544175 25 GVDVTAHRGDVVSLIGSSGSGKSTLL 50
Cdd:pfam13555 14 GHTIPIDPRGNTLLTGPSGSGKSTLL 39
|
|
| |
