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Conserved domains on  [gi|136988797|gb|EBR57912|]
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hypothetical protein GOS_7575579, partial [marine metagenome]

Protein Classification

phosphoglycerate dehydrogenase( domain architecture ID 10617841)

phosphoglycerate dehydrogenase catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, the first step in serine biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ACT_6 pfam13740
ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains.
8-60 2.37e-15

ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains.


:

Pssm-ID: 433446 [Multi-domain]  Cd Length: 76  Bit Score: 62.96  E-value: 2.37e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 136988797   8 SIFLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSED 60
Cdd:pfam13740  1 EILLITATGPDRPGLTASLTAVLAEHGCNILDSGQAVIHNRLSLGLLVSGPWD 53
 
Name Accession Description Interval E-value
ACT_6 pfam13740
ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains.
8-60 2.37e-15

ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains.


Pssm-ID: 433446 [Multi-domain]  Cd Length: 76  Bit Score: 62.96  E-value: 2.37e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 136988797   8 SIFLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSED 60
Cdd:pfam13740  1 EILLITATGPDRPGLTASLTAVLAEHGCNILDSGQAVIHNRLSLGLLVSGPWD 53
ACT_PSP_1 cd04870
CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB); The ACT_PSP_1 CD ...
11-62 8.46e-15

CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB); The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153142  Cd Length: 75  Bit Score: 61.49  E-value: 8.46e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 136988797 11 LVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSEDVD 62
Cdd:cd04870   1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD 52
ACT COG3830
ACT domain, binds amino acids and other small ligands [Signal transduction mechanisms];
7-62 3.66e-11

ACT domain, binds amino acids and other small ligands [Signal transduction mechanisms];


Pssm-ID: 443042 [Multi-domain]  Cd Length: 212  Bit Score: 55.09  E-value: 3.66e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 136988797   7 DSIFLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSEDVD 62
Cdd:COG3830    2 SMKALITVTGKDRPGITAAVSGVLAEHGVNILDISQTVIHGYFTMGMLVDLPESSA 57
PRK05092 PRK05092
PII uridylyl-transferase; Provisional
12-45 1.21e-03

PII uridylyl-transferase; Provisional


Pssm-ID: 235342 [Multi-domain]  Cd Length: 931  Bit Score: 34.84  E-value: 1.21e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 136988797  12 VSISGDDRPGLMTDLCAALSAHNadiLDIGQAII 45
Cdd:PRK05092 846 IEVNGRDRPGLLYDLTRALSDLN---LNIASAHI 876
 
Name Accession Description Interval E-value
ACT_6 pfam13740
ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains.
8-60 2.37e-15

ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains.


Pssm-ID: 433446 [Multi-domain]  Cd Length: 76  Bit Score: 62.96  E-value: 2.37e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 136988797   8 SIFLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSED 60
Cdd:pfam13740  1 EILLITATGPDRPGLTASLTAVLAEHGCNILDSGQAVIHNRLSLGLLVSGPWD 53
ACT_PSP_1 cd04870
CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB); The ACT_PSP_1 CD ...
11-62 8.46e-15

CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB); The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153142  Cd Length: 75  Bit Score: 61.49  E-value: 8.46e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 136988797 11 LVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSEDVD 62
Cdd:cd04870   1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD 52
ACT COG3830
ACT domain, binds amino acids and other small ligands [Signal transduction mechanisms];
7-62 3.66e-11

ACT domain, binds amino acids and other small ligands [Signal transduction mechanisms];


Pssm-ID: 443042 [Multi-domain]  Cd Length: 212  Bit Score: 55.09  E-value: 3.66e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 136988797   7 DSIFLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSEDVD 62
Cdd:COG3830    2 SMKALITVTGKDRPGITAAVSGVLAEHGVNILDISQTVIHGYFTMGMLVDLPESSA 57
GcvR COG2716
Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];
10-60 5.36e-06

Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];


Pssm-ID: 442029 [Multi-domain]  Cd Length: 174  Bit Score: 40.97  E-value: 5.36e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 136988797  10 FLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSED 60
Cdd:COG2716    4 LVITAIGPDRPGIVAALARAVSEHGCNILDSRMARLGGEFAGILLVSGPWD 54
ACT cd02116
ACT domains are commonly involved in specifically binding an amino acid or other small ligand ...
12-62 7.70e-05

ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times.


Pssm-ID: 153139 [Multi-domain]  Cd Length: 60  Bit Score: 36.12  E-value: 7.70e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 136988797 12 VSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSEDVD 62
Cdd:cd02116   1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD 51
ACT_UUR-ACR-like cd04873
ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) ...
11-39 3.02e-04

ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153145 [Multi-domain]  Cd Length: 70  Bit Score: 34.83  E-value: 3.02e-04
                        10        20
                ....*....|....*....|....*....
gi 136988797 11 LVSISGDDRPGLMTDLCAALSAHNADILD 39
Cdd:cd04873   2 VVEVYAPDRPGLLADITRVLADLGLNIHD 30
GlnD COG2844
UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, ...
12-47 9.72e-04

UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms];


Pssm-ID: 442092 [Multi-domain]  Cd Length: 864  Bit Score: 34.73  E-value: 9.72e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 136988797  12 VSISGDDRPGLMTDLCAALSAHNADILDigqAIIHS 47
Cdd:COG2844  682 VFVYTPDRPGLFARIAGALAALGLNILD---ARIHT 714
PRK05092 PRK05092
PII uridylyl-transferase; Provisional
12-45 1.21e-03

PII uridylyl-transferase; Provisional


Pssm-ID: 235342 [Multi-domain]  Cd Length: 931  Bit Score: 34.84  E-value: 1.21e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 136988797  12 VSISGDDRPGLMTDLCAALSAHNadiLDIGQAII 45
Cdd:PRK05092 846 IEVNGRDRPGLLYDLTRALSDLN---LNIASAHI 876
ACT_1ZPV cd04872
ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain ...
11-45 1.69e-03

ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein; This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153144 [Multi-domain]  Cd Length: 88  Bit Score: 32.97  E-value: 1.69e-03
                        10        20        30
                ....*....|....*....|....*....|....*
gi 136988797 11 LVSISGDDRPGLMTDLCAALSAHNADILDIGQAII 45
Cdd:cd04872   3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM 37
ACT_UUR-like_1 cd04900
ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the ...
12-39 2.05e-03

ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153172 [Multi-domain]  Cd Length: 73  Bit Score: 32.45  E-value: 2.05e-03
                        10        20
                ....*....|....*....|....*...
gi 136988797 12 VSISGDDRPGLMTDLCAALSAHNADILD 39
Cdd:cd04900   4 VFIYTPDRPGLFARIAGALDQLGLNILD 31
GcvR COG2716
Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];
10-40 2.07e-03

Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];


Pssm-ID: 442029 [Multi-domain]  Cd Length: 174  Bit Score: 33.66  E-value: 2.07e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 136988797  10 FLVSISGDDRPGLMTDLCAALSAHNADILDI 40
Cdd:COG2716   91 YVVEVVGNDRPGIVAEVTQFLAERGINIEDL 121
PRK00194 PRK00194
ACT domain-containing protein;
8-59 6.59e-03

ACT domain-containing protein;


Pssm-ID: 178923 [Multi-domain]  Cd Length: 90  Bit Score: 31.70  E-value: 6.59e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 136988797  8 SIFLVSISGDDRPGLMTDLCAALSAHNADILDIGQAIIHSELALGLLVRVSE 59
Cdd:PRK00194  2 MKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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