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Conserved domains on  [gi|140357317|gb|ECL21679|]
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hypothetical protein GOS_4257772, partial [marine metagenome]

Protein Classification

ribose-phosphate pyrophosphokinase-like domain-containing protein( domain architecture ID 10619030)

ribose-phosphate pyrophosphokinase-like domain-containing protein which contains the N-terminal domain of ribose-phosphate pyrophosphokinase and phosphoribosyl pyrophosphate synthetase-associated proteins, which play roles in 5-phospho-ribosyl-1(alpha)-pyrophosphate (PRPP) synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pribosyltran_N pfam13793
N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found ...
 1-114 2.08e-68

N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal to the Pribosyltran, pfam00156.


:

Pssm-ID: 433483 [Multi-domain]  Cd Length: 117  Bit Score: 200.72  E-value: 2.08e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317    1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:pfam13793   1 LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPVNDNLMELLIMIDALKRASAK 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 140357317   81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:pfam13793  81 RITAVIPYFGYARQDRKDKPREPITAKLVADLLE 114
 
Name Accession Description Interval E-value
Pribosyltran_N pfam13793
N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found ...
 1-114 2.08e-68

N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal to the Pribosyltran, pfam00156.


Pssm-ID: 433483 [Multi-domain]  Cd Length: 117  Bit Score: 200.72  E-value: 2.08e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317    1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:pfam13793   1 LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPVNDNLMELLIMIDALKRASAK 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 140357317   81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:pfam13793  81 RITAVIPYFGYARQDRKDKPREPITAKLVADLLE 114
PRK01259 PRK01259
ribose-phosphate diphosphokinase;
1-114 1.11e-67

ribose-phosphate diphosphokinase;


Pssm-ID: 234929 [Multi-domain]  Cd Length: 309  Bit Score: 205.74  E-value: 1.11e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:PRK01259   1 MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAG 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:PRK01259  81 RITAVIPYFGYARQDRKARSRVPITAKLVANLLE 114
PrsA COG0462
Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism]; ...
 1-114 5.19e-67

Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism]; Phosphoribosylpyrophosphate synthetase is part of the Pathway/BioSystem: Histidine biosynthesis, Purine biosynthesis


Pssm-ID: 440230 [Multi-domain]  Cd Length: 311  Bit Score: 203.75  E-value: 5.19e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:COG0462    4 LKIFSGNANPELAEEIAEYLGVPLGKAEVRRFSDGEIYVRIEESVRGRDVFVIQSTSPPVNDNLMELLIMIDALKRASAR 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:COG0462   84 RITAVIPYYGYARQDRKFRPREPITAKLVADLLE 117
ribP_PPkin TIGR01251
ribose-phosphate pyrophosphokinase; Alternate name: phosphoribosylpyrophosphate synthetase In ...
 1-114 9.84e-51

ribose-phosphate pyrophosphokinase; Alternate name: phosphoribosylpyrophosphate synthetase In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273523 [Multi-domain]  Cd Length: 308  Bit Score: 162.45  E-value: 9.84e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317    1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVI-QSTSNPANDNLMELLLVVDALKRSSA 79
Cdd:TIGR01251   1 MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIqQSTSAPVNDNLMELLIMIDALKRASA 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 140357317   80 KNVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:TIGR01251  81 KSITAVIPYYGYARQDKKFKSREPISAKLVANLLE 115
 
Name Accession Description Interval E-value
Pribosyltran_N pfam13793
N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found ...
 1-114 2.08e-68

N-terminal domain of ribose phosphate pyrophosphokinase; This family is frequently found N-terminal to the Pribosyltran, pfam00156.


Pssm-ID: 433483 [Multi-domain]  Cd Length: 117  Bit Score: 200.72  E-value: 2.08e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317    1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:pfam13793   1 LKIFSGNSNPELAEKIAKRLGIPLGKATVSRFSDGEIYVRIEESVRGKDVFIIQSTCPPVNDNLMELLIMIDALKRASAK 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 140357317   81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:pfam13793  81 RITAVIPYFGYARQDRKDKPREPITAKLVADLLE 114
PRK01259 PRK01259
ribose-phosphate diphosphokinase;
1-114 1.11e-67

ribose-phosphate diphosphokinase;


Pssm-ID: 234929 [Multi-domain]  Cd Length: 309  Bit Score: 205.74  E-value: 1.11e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:PRK01259   1 MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAG 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:PRK01259  81 RITAVIPYFGYARQDRKARSRVPITAKLVANLLE 114
PrsA COG0462
Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism]; ...
 1-114 5.19e-67

Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism]; Phosphoribosylpyrophosphate synthetase is part of the Pathway/BioSystem: Histidine biosynthesis, Purine biosynthesis


Pssm-ID: 440230 [Multi-domain]  Cd Length: 311  Bit Score: 203.75  E-value: 5.19e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:COG0462    4 LKIFSGNANPELAEEIAEYLGVPLGKAEVRRFSDGEIYVRIEESVRGRDVFVIQSTSPPVNDNLMELLIMIDALKRASAR 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:COG0462   84 RITAVIPYYGYARQDRKFRPREPITAKLVADLLE 117
ribP_PPkin TIGR01251
ribose-phosphate pyrophosphokinase; Alternate name: phosphoribosylpyrophosphate synthetase In ...
 1-114 9.84e-51

ribose-phosphate pyrophosphokinase; Alternate name: phosphoribosylpyrophosphate synthetase In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273523 [Multi-domain]  Cd Length: 308  Bit Score: 162.45  E-value: 9.84e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317    1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVI-QSTSNPANDNLMELLLVVDALKRSSA 79
Cdd:TIGR01251   1 MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIqQSTSAPVNDNLMELLIMIDALKRASA 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 140357317   80 KNVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:TIGR01251  81 KSITAVIPYYGYARQDKKFKSREPISAKLVANLLE 115
PRK02812 PRK02812
ribose-phosphate pyrophosphokinase; Provisional
 1-114 1.41e-48

ribose-phosphate pyrophosphokinase; Provisional


Pssm-ID: 235072 [Multi-domain]  Cd Length: 330  Bit Score: 157.60  E-value: 1.41e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:PRK02812  22 LRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASAR 101

                         90       100       110
                 ....*....|....*....|....*....|....
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:PRK02812 102 QITAVIPYYGYARADRKTAGRESITAKLVANLIT 135
PLN02369 PLN02369
ribose-phosphate pyrophosphokinase
 12-114 8.63e-48

ribose-phosphate pyrophosphokinase


Pssm-ID: 215209 [Multi-domain]  Cd Length: 302  Bit Score: 154.47  E-value: 8.63e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317  12 LSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAKNVTAVIPYFGY 91
Cdd:PLN02369   3 LSQEIACYLGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGY 82

                         90       100
                 ....*....|....*....|...
gi 140357317  92 ARQDRKVAPRTSISAKVVANLIT 114
Cdd:PLN02369  83 ARADRKTQGRESIAAKLVANLIT 105
PRK02269 PRK02269
ribose-phosphate diphosphokinase;
1-113 1.10e-43

ribose-phosphate diphosphokinase;


Pssm-ID: 167353 [Multi-domain]  Cd Length: 320  Bit Score: 144.55  E-value: 1.10e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:PRK02269   6 LKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAE 85

                         90       100       110
                 ....*....|....*....|....*....|...
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLI 113
Cdd:PRK02269  86 SINVVMPYYGYARQDRKARSREPITSKLVANML 118
PRK02458 PRK02458
ribose-phosphate pyrophosphokinase; Provisional
 1-114 1.34e-42

ribose-phosphate pyrophosphokinase; Provisional


Pssm-ID: 235039 [Multi-domain]  Cd Length: 323  Bit Score: 141.80  E-value: 1.34e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   1 MKILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAK 80
Cdd:PRK02458  10 IKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASAN 89

                         90       100       110
                 ....*....|....*....|....*....|....
gi 140357317  81 NVTAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:PRK02458  90 TVNVVLPYFGYARQDRIAKPREPITAKLVANMLV 123
PRK04923 PRK04923
ribose-phosphate diphosphokinase;
3-114 2.00e-40

ribose-phosphate diphosphokinase;


Pssm-ID: 179893 [Multi-domain]  Cd Length: 319  Bit Score: 136.21  E-value: 2.00e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   3 ILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAKNV 82
Cdd:PRK04923   9 VFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASV 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 140357317  83 TAVIPYFGYARQDRKV-APRTSISAKVVANLIT 114
Cdd:PRK04923  89 TAVIPYFGYSRQDRRMrSSRVPITAKVAAKMIS 121
PTZ00145 PTZ00145
phosphoribosylpyrophosphate synthetase; Provisional
 3-113 6.35e-40

phosphoribosylpyrophosphate synthetase; Provisional


Pssm-ID: 240290 [Multi-domain]  Cd Length: 439  Bit Score: 137.31  E-value: 6.35e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   3 ILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAKNV 82
Cdd:PTZ00145 122 LFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKI 201

                         90       100       110
                 ....*....|....*....|....*....|.
gi 140357317  83 TAVIPYFGYARQDRKVAPRTSISAKVVANLI 113
Cdd:PTZ00145 202 TAVIPYYGYARQDRKLSSRVPISAADVARMI 232
PRK03092 PRK03092
ribose-phosphate diphosphokinase;
12-113 3.17e-38

ribose-phosphate diphosphokinase;


Pssm-ID: 179535 [Multi-domain]  Cd Length: 304  Bit Score: 130.07  E-value: 3.17e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317  12 LSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAKNVTAVIPYFGY 91
Cdd:PRK03092   1 LAEEVAKELGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPY 80

                         90       100
                 ....*....|....*....|..
gi 140357317  92 ARQDRKVAPRTSISAKVVANLI 113
Cdd:PRK03092  81 ARQDKKHRGREPISARLVADLF 102
PRK00553 PRK00553
ribose-phosphate pyrophosphokinase; Provisional
 3-114 5.45e-37

ribose-phosphate pyrophosphokinase; Provisional


Pssm-ID: 179062 [Multi-domain]  Cd Length: 332  Bit Score: 127.73  E-value: 5.45e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   3 ILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPANDNLMELLLVVDALKRSSAKNV 82
Cdd:PRK00553  12 IFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSI 91

                         90       100       110
                 ....*....|....*....|....*....|..
gi 140357317  83 TAVIPYFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:PRK00553  92 TAILPYYGYARQDRKTAGREPITSKLVADLLT 123
PRK00934 PRK00934
ribose-phosphate pyrophosphokinase; Provisional
 2-113 1.30e-35

ribose-phosphate pyrophosphokinase; Provisional


Pssm-ID: 234868 [Multi-domain]  Cd Length: 285  Bit Score: 122.71  E-value: 1.30e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   2 KILSGTSNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTsNPANDNLMELLLVVDALKRSSAKN 81
Cdd:PRK00934   1 MIIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTT-YPQDENLVELLLLIDALRDEGAKS 79

                         90       100       110
                 ....*....|....*....|....*....|..
gi 140357317  82 VTAVIPYFGYARQDRKVAPRTSISAKVVANLI 113
Cdd:PRK00934  80 ITLVIPYLGYARQDKRFKPGEPISARAIAKII 111
PRK07199 PRK07199
ribose-phosphate diphosphokinase;
8-114 7.71e-17

ribose-phosphate diphosphokinase;


Pssm-ID: 235960 [Multi-domain]  Cd Length: 301  Bit Score: 73.82  E-value: 7.71e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317   8 SNLKLSKDISKKLKLKLVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPaNDNLMELLLVVDALKRSSAKNVTAVIP 87
Cdd:PRK07199  10 GNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGARRVGLVAP 88

                         90       100
                 ....*....|....*....|....*..
gi 140357317  88 YFGYARQDRKVAPRTSISAKVVANLIT 114
Cdd:PRK07199  89 YLAYMRQDIAFHPGEAISQRHFARLLS 115
PRK06827 PRK06827
phosphoribosylpyrophosphate synthetase; Provisional
 24-97 3.56e-10

phosphoribosylpyrophosphate synthetase; Provisional


Pssm-ID: 180714 [Multi-domain]  Cd Length: 382  Bit Score: 55.34  E-value: 3.56e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 140357317  24 LVNTNIRRFADGEIYIEINENIRGNSVFVIQSTSNPA--------------NDNLMELLLVVDALkRSSAKNVTAVIPYF 89
Cdd:PRK06827  54 LIPAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSvtynmfgeknhmspDDHFQDLKRTIDAI-RGKARRITVIMPFL 132


                 ....*...
gi 140357317  90 GYARQDRK 97
Cdd:PRK06827 133 YESRQHKR 140
PLN02297 PLN02297
ribose-phosphate pyrophosphokinase
 27-89 2.75e-04

ribose-phosphate pyrophosphokinase


Pssm-ID: 177934 [Multi-domain]  Cd Length: 326  Bit Score: 38.52  E-value: 2.75e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 140357317  27 TNIRRFADGEIYIEIN--ENIRGNSVFVIQSTSNPanDNLMELLLVVDALKRSSAKNVTAVIPYF 89
Cdd:PLN02297  44 INWRKFPDGFPNLFINnaHGIRGQHVAFLASFSSP--AVIFEQLSVIYALPKLFVASFTLVLPFF 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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