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Conserved domains on  [gi|148666879|gb|EDK99295|]
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fibulin 2, isoform CRA_b [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
420-479 3.46e-09

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


:

Pssm-ID: 237984  Cd Length: 70  Bit Score: 54.39  E-value: 3.46e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148666879  420 PRGDLDGSTKD-LIETCCAAGQQWAIDNDECQEIPENGAQSDICRIAQRQCCISYLKEKSC 479
Cdd:cd00017     1 KNSEKAAQYKDkELRKCCLDGMRENPMGQTCEERAAYITDGKECRKAFLECCVYAEELRDE 61
EGF_CA pfam07645
Calcium-binding EGF domain;
754-789 1.45e-08

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 51.47  E-value: 1.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   754 DVDECVTGTHNCQAGFSCQNTKGSFYCqarqRCMDG 789
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFEC----RCPDG 32
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
505-553 2.47e-07

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


:

Pssm-ID: 237984  Cd Length: 70  Bit Score: 48.99  E-value: 2.47e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148666879  505 YKQCCDCCGLGLRVRAEGQSCESNP---NLGYPCNHVMLSCCEGEEPLIVPE 553
Cdd:cd00017    11 DKELRKCCLDGMRENPMGQTCEERAayiTDGKECRKAFLECCVYAEELRDEE 62
EGF_CA pfam07645
Calcium-binding EGF domain;
1015-1049 3.85e-07

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 47.23  E-value: 3.85e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 148666879  1015 DLDECALGTHNCSEAETCHNIQGSFRCLrfdCPPN 1049
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
848-890 6.19e-07

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 46.86  E-value: 6.19e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    848 DVNECETGvHRCGEGQLCYNLPGSYRCDCKPGFQRdafGRTCI 890
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYTD---GRNCE 39
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
606-634 1.03e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.08  E-value: 1.03e-06
                           10        20
                   ....*....|....*....|....*....
gi 148666879   606 CQHLCINTVGSYRCACFPGFELQGDGRTC 634
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
903-931 3.72e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 3.72e-06
                           10        20
                   ....*....|....*....|....*....
gi 148666879   903 CQHTCENTPGSYRCSCAAGFLLAADGKHC 931
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
PHA03247 super family cl33720
large tegument protein UL36; Provisional
287-422 9.37e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 9.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  287 PPTAGSPGRLDSLPTRSPA-RPGFP-VQEKEAEAKAGPEENLiPDAQVTPRSVMQEGAAPLPrsglaalspsLATDSSSE 364
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPApRPSEPaVTSRARRPDAPPQSAR-PRAPVDDRGDPRGPAPPSP----------LPPDTHAP 2624
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 148666879  365 DPVKPSDHPTLSTLPPDRAQVSPSPETPEEIPQHPQLLPRFRAEEDIDPNSVHSVPRG 422
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
942-970 5.16e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 41.46  E-value: 5.16e-05
                           10        20
                   ....*....|....*....|....*....
gi 148666879   942 CSQECANIYGSYQCYCRQGYQLAEDGHTC 970
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
800-838 6.94e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 6.94e-05
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 148666879    800 DINECTSLlEPCRSGFSCINTVGSYTCQrnplvCGRGYH 838
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCE-----CPPGYT 33
EGF_CA pfam07645
Calcium-binding EGF domain;
709-744 2.33e-04

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.53  E-value: 2.33e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   709 DINECVTDLHTCTRAEHCVNTPGSFQCykalTCEPG 744
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFEC----RCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
972-1014 6.28e-04

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.38  E-value: 6.28e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    972 DIDECAQGAGILCTFRCVNVPGSYQCACPEqGYTmmaNGRSCK 1014
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPP-GYT---DGRNCE 39
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
692-712 5.76e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


:

Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.46  E-value: 5.76e-03
                           10        20
                   ....*....|....*....|.
gi 148666879   692 CSCFPGYAIMADGVSCEDINE 712
Cdd:pfam12662    2 CSCPPGYQLDPDGRTCVDIDE 22
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
675-707 7.05e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 35.30  E-value: 7.05e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 148666879   675 DNGPCRQVCRVVGDTAMCSCFPGYAIMADGVSC 707
Cdd:pfam14670    4 NNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
420-479 3.46e-09

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 54.39  E-value: 3.46e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148666879  420 PRGDLDGSTKD-LIETCCAAGQQWAIDNDECQEIPENGAQSDICRIAQRQCCISYLKEKSC 479
Cdd:cd00017     1 KNSEKAAQYKDkELRKCCLDGMRENPMGQTCEERAAYITDGKECRKAFLECCVYAEELRDE 61
EGF_CA pfam07645
Calcium-binding EGF domain;
754-789 1.45e-08

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 51.47  E-value: 1.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   754 DVDECVTGTHNCQAGFSCQNTKGSFYCqarqRCMDG 789
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFEC----RCPDG 32
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
505-553 2.47e-07

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 48.99  E-value: 2.47e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148666879  505 YKQCCDCCGLGLRVRAEGQSCESNP---NLGYPCNHVMLSCCEGEEPLIVPE 553
Cdd:cd00017    11 DKELRKCCLDGMRENPMGQTCEERAayiTDGKECRKAFLECCVYAEELRDEE 62
EGF_CA pfam07645
Calcium-binding EGF domain;
1015-1049 3.85e-07

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 47.23  E-value: 3.85e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 148666879  1015 DLDECALGTHNCSEAETCHNIQGSFRCLrfdCPPN 1049
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
848-890 6.19e-07

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 46.86  E-value: 6.19e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    848 DVNECETGvHRCGEGQLCYNLPGSYRCDCKPGFQRdafGRTCI 890
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYTD---GRNCE 39
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
606-634 1.03e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.08  E-value: 1.03e-06
                           10        20
                   ....*....|....*....|....*....
gi 148666879   606 CQHLCINTVGSYRCACFPGFELQGDGRTC 634
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
848-890 1.94e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 45.32  E-value: 1.94e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 148666879  848 DVNECETGvHRCGEGQLCYNLPGSYRCDCKPGFQrdafGRTCI 890
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT----GRNCE 38
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
903-931 3.72e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 3.72e-06
                           10        20
                   ....*....|....*....|....*....
gi 148666879   903 CQHTCENTPGSYRCSCAAGFLLAADGKHC 931
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
891-932 5.57e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 44.16  E-value: 5.57e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 148666879    891 DVNECwvSPGRLCQH--TCENTPGSYRCSCAAGFLlaaDGKHCE 932
Cdd:smart00179    1 DIDEC--ASGNPCQNggTCVNTVGSYRCECPPGYT---DGRNCE 39
PHA03247 PHA03247
large tegument protein UL36; Provisional
287-422 9.37e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 9.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  287 PPTAGSPGRLDSLPTRSPA-RPGFP-VQEKEAEAKAGPEENLiPDAQVTPRSVMQEGAAPLPrsglaalspsLATDSSSE 364
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPApRPSEPaVTSRARRPDAPPQSAR-PRAPVDDRGDPRGPAPPSP----------LPPDTHAP 2624
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 148666879  365 DPVKPSDHPTLSTLPPDRAQVSPSPETPEEIPQHPQLLPRFRAEEDIDPNSVHSVPRG 422
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682
ANATO smart00104
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
435-470 1.26e-05

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 197517  Cd Length: 35  Bit Score: 43.09  E-value: 1.26e-05
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 148666879    435 CCAAGQQWAIDNDECQEIPENGAQSDiCRIAQRQCC 470
Cdd:smart00104    1 CCADGMRLAPMGETCEERAARINSGD-CRKAFLQCC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
942-970 5.16e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 41.46  E-value: 5.16e-05
                           10        20
                   ....*....|....*....|....*....
gi 148666879   942 CSQECANIYGSYQCYCRQGYQLAEDGHTC 970
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
800-838 6.94e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 6.94e-05
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 148666879    800 DINECTSLlEPCRSGFSCINTVGSYTCQrnplvCGRGYH 838
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCE-----CPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
891-932 9.55e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 40.70  E-value: 9.55e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 148666879  891 DVNECwvSPGRLCQH--TCENTPGSYRCSCAAGFLlaadGKHCE 932
Cdd:cd00054     1 DIDEC--ASGNPCQNggTCVNTVGSYRCSCPPGYT----GRNCE 38
EGF_CA pfam07645
Calcium-binding EGF domain;
709-744 2.33e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.53  E-value: 2.33e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   709 DINECVTDLHTCTRAEHCVNTPGSFQCykalTCEPG 744
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFEC----RCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
594-634 2.49e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.54  E-value: 2.49e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    594 DQDECLMlpGELCQH--LCINTVGSYRCACFPGFElqgDGRTC 634
Cdd:smart00179    1 DIDECAS--GNPCQNggTCVNTVGSYRCECPPGYT---DGRNC 38
EGF_CA pfam07645
Calcium-binding EGF domain;
848-879 3.09e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.14  E-value: 3.09e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 148666879   848 DVNECETGVHRCGEGQLCYNLPGSYRCDCKPG 879
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
972-1014 6.28e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.38  E-value: 6.28e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    972 DIDECAQGAGILCTFRCVNVPGSYQCACPEqGYTmmaNGRSCK 1014
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPP-GYT---DGRNCE 39
EGF_CA pfam07645
Calcium-binding EGF domain;
800-827 6.93e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 37.99  E-value: 6.93e-04
                           10        20
                   ....*....|....*....|....*...
gi 148666879   800 DINECTSLLEPCRSGFSCINTVGSYTCQ 827
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECR 28
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
800-838 7.03e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 7.03e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 148666879  800 DINECTSLlEPCRSGFSCINTVGSYTCQrnplvCGRGYH 838
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCS-----CPPGYT 33
ANATO pfam01821
Anaphylotoxin-like domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated ...
435-470 8.47e-04

Anaphylotoxin-like domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 460347  Cd Length: 36  Bit Score: 38.03  E-value: 8.47e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   435 CCAAGQQWAIDNDECQEIPENGAQSDICRIAQRQCC 470
Cdd:pfam01821    1 CCLDGMKRNPMGRSCEQRAARIKEGPRCRKAFLQCC 36
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
287-420 9.66e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 43.60  E-value: 9.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879   287 PPTAGSPGRLDSLPTRSPARPGFPVQEKEAEAKAGPEENLIPDAQVTPRSVMQEGAAPLPRSGLAALS------------ 354
Cdd:pfam03154  312 GPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSgpspfqmnsnlp 391
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 148666879   355 --PSLATDSSSEDPVKPSDHPTLSTLPPDRAQVSPSPETPEEIPQHPQLLPrfRAEEDIDPNSVHSVP 420
Cdd:pfam03154  392 ppPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPP--PAASHPPTSGLHQVP 457
EGF_CA smart00179
Calcium-binding EGF-like domain;
709-745 1.16e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.61  E-value: 1.16e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 148666879    709 DINECVTDlHTCTRAEHCVNTPGSFQCykalTCEPGY 745
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRC----ECPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
754-790 1.49e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.23  E-value: 1.49e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 148666879    754 DVDECVTGtHNCQAGFSCQNTKGSFYCQarqrCMDGF 790
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCE----CPPGY 32
ANATO smart00104
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
511-543 1.93e-03

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 197517  Cd Length: 35  Bit Score: 36.93  E-value: 1.93e-03
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 148666879    511 CCGLGLRVRAEGQSCESNPNLGY--PCNHVMLSCC 543
Cdd:smart00104    1 CCADGMRLAPMGETCEERAARINsgDCRKAFLQCC 35
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
594-634 2.34e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.85  E-value: 2.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 148666879  594 DQDECLMLPGELCQHLCINTVGSYRCACFPGFElqgdGRTC 634
Cdd:cd00054     1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNC 37
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
972-1014 4.34e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.08  E-value: 4.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 148666879  972 DIDECAQGAGILCTFRCVNVPGSYQCACPEqGYTmmanGRSCK 1014
Cdd:cd00054     1 DIDECASGNPCQNGGTCVNTVGSYRCSCPP-GYT----GRNCE 38
EGF_CA smart00179
Calcium-binding EGF-like domain;
1015-1050 4.73e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.07  E-value: 4.73e-03
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 148666879   1015 DLDECALGtHNCSEAETCHNIQGSFRClrfDCPPNY 1050
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRC---ECPPGY 32
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
692-712 5.76e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.46  E-value: 5.76e-03
                           10        20
                   ....*....|....*....|.
gi 148666879   692 CSCFPGYAIMADGVSCEDINE 712
Cdd:pfam12662    2 CSCPPGYQLDPDGRTCVDIDE 22
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
754-790 6.19e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 35.69  E-value: 6.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 148666879  754 DVDECVTGtHNCQAGFSCQNTKGSFYCQarqrCMDGF 790
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCS----CPPGY 32
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
675-707 7.05e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 35.30  E-value: 7.05e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 148666879   675 DNGPCRQVCRVVGDTAMCSCFPGYAIMADGVSC 707
Cdd:pfam14670    4 NNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
420-479 3.46e-09

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 54.39  E-value: 3.46e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148666879  420 PRGDLDGSTKD-LIETCCAAGQQWAIDNDECQEIPENGAQSDICRIAQRQCCISYLKEKSC 479
Cdd:cd00017     1 KNSEKAAQYKDkELRKCCLDGMRENPMGQTCEERAAYITDGKECRKAFLECCVYAEELRDE 61
EGF_CA pfam07645
Calcium-binding EGF domain;
754-789 1.45e-08

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 51.47  E-value: 1.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   754 DVDECVTGTHNCQAGFSCQNTKGSFYCqarqRCMDG 789
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFEC----RCPDG 32
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
505-553 2.47e-07

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 48.99  E-value: 2.47e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 148666879  505 YKQCCDCCGLGLRVRAEGQSCESNP---NLGYPCNHVMLSCCEGEEPLIVPE 553
Cdd:cd00017    11 DKELRKCCLDGMRENPMGQTCEERAayiTDGKECRKAFLECCVYAEELRDEE 62
EGF_CA pfam07645
Calcium-binding EGF domain;
1015-1049 3.85e-07

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 47.23  E-value: 3.85e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 148666879  1015 DLDECALGTHNCSEAETCHNIQGSFRCLrfdCPPN 1049
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
848-890 6.19e-07

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 46.86  E-value: 6.19e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    848 DVNECETGvHRCGEGQLCYNLPGSYRCDCKPGFQRdafGRTCI 890
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYTD---GRNCE 39
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
606-634 1.03e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 46.08  E-value: 1.03e-06
                           10        20
                   ....*....|....*....|....*....
gi 148666879   606 CQHLCINTVGSYRCACFPGFELQGDGRTC 634
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
848-890 1.94e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 45.32  E-value: 1.94e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 148666879  848 DVNECETGvHRCGEGQLCYNLPGSYRCDCKPGFQrdafGRTCI 890
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT----GRNCE 38
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
903-931 3.72e-06

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.54  E-value: 3.72e-06
                           10        20
                   ....*....|....*....|....*....
gi 148666879   903 CQHTCENTPGSYRCSCAAGFLLAADGKHC 931
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF_CA smart00179
Calcium-binding EGF-like domain;
891-932 5.57e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 44.16  E-value: 5.57e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 148666879    891 DVNECwvSPGRLCQH--TCENTPGSYRCSCAAGFLlaaDGKHCE 932
Cdd:smart00179    1 DIDEC--ASGNPCQNggTCVNTVGSYRCECPPGYT---DGRNCE 39
PHA03247 PHA03247
large tegument protein UL36; Provisional
287-422 9.37e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 9.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  287 PPTAGSPGRLDSLPTRSPA-RPGFP-VQEKEAEAKAGPEENLiPDAQVTPRSVMQEGAAPLPrsglaalspsLATDSSSE 364
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPApRPSEPaVTSRARRPDAPPQSAR-PRAPVDDRGDPRGPAPPSP----------LPPDTHAP 2624
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 148666879  365 DPVKPSDHPTLSTLPPDRAQVSPSPETPEEIPQHPQLLPRFRAEEDIDPNSVHSVPRG 422
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682
ANATO smart00104
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
435-470 1.26e-05

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 197517  Cd Length: 35  Bit Score: 43.09  E-value: 1.26e-05
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 148666879    435 CCAAGQQWAIDNDECQEIPENGAQSDiCRIAQRQCC 470
Cdd:smart00104    1 CCADGMRLAPMGETCEERAARINSGD-CRKAFLQCC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
942-970 5.16e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 41.46  E-value: 5.16e-05
                           10        20
                   ....*....|....*....|....*....
gi 148666879   942 CSQECANIYGSYQCYCRQGYQLAEDGHTC 970
Cdd:pfam14670    8 CSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
954-975 5.26e-05

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 41.24  E-value: 5.26e-05
                           10        20
                   ....*....|....*....|..
gi 148666879   954 QCYCRQGYQLAEDGHTCTDIDE 975
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
EGF_CA smart00179
Calcium-binding EGF-like domain;
800-838 6.94e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 6.94e-05
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 148666879    800 DINECTSLlEPCRSGFSCINTVGSYTCQrnplvCGRGYH 838
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCE-----CPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
891-932 9.55e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 40.70  E-value: 9.55e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 148666879  891 DVNECwvSPGRLCQH--TCENTPGSYRCSCAAGFLlaadGKHCE 932
Cdd:cd00054     1 DIDEC--ASGNPCQNggTCVNTVGSYRCSCPPGYT----GRNCE 38
PHA03247 PHA03247
large tegument protein UL36; Provisional
202-400 9.66e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 9.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  202 VAEAEATTAIVNEVQAGAEGPPAALGGGNLPPSSIRVTPWPVALPRPTAAAALGPPAPvqAKARRVTLDTEEDEEEEEEE 281
Cdd:PHA03247 2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES--LPSPWDPADPPAAVLAPAAA 2817
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  282 TLVTEPPTAGSPGRLDSLPTrSPARPGFPVQEKEAeakagPEENLIPDAQV----TPRSVMQEGAAP--LPRSGLAALSP 355
Cdd:PHA03247 2818 LPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLP-----LGGSVAPGGDVrrrpPSRSPAAKPAAParPPVRRLARPAV 2891
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 148666879  356 SLATDSSSEDPVKPSDHPTLST----LPPDRAQVSPSPETPEEIPQHPQ 400
Cdd:PHA03247 2892 SRSTESFALPPDQPERPPQPQAppppQPQPQPPPPPQPQPPPPPPPRPQ 2940
EGF_CA pfam07645
Calcium-binding EGF domain;
709-744 2.33e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.53  E-value: 2.33e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   709 DINECVTDLHTCTRAEHCVNTPGSFQCykalTCEPG 744
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFEC----RCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
594-634 2.49e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.54  E-value: 2.49e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    594 DQDECLMlpGELCQH--LCINTVGSYRCACFPGFElqgDGRTC 634
Cdd:smart00179    1 DIDECAS--GNPCQNggTCVNTVGSYRCECPPGYT---DGRNC 38
EGF_CA pfam07645
Calcium-binding EGF domain;
848-879 3.09e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.14  E-value: 3.09e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 148666879   848 DVNECETGVHRCGEGQLCYNLPGSYRCDCKPG 879
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
886-929 3.22e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 43.53  E-value: 3.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 148666879  886 GRTCIDVNECWVSPgRLCQHTCENTPGSYRCSCAAGFLLAADGK 929
Cdd:cd01475   181 GKICVVPDLCATLS-HVCQQVCISTPGSYLCACTEGYALLEDNK 223
EGF_CA smart00179
Calcium-binding EGF-like domain;
972-1014 6.28e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 38.38  E-value: 6.28e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 148666879    972 DIDECAQGAGILCTFRCVNVPGSYQCACPEqGYTmmaNGRSCK 1014
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPP-GYT---DGRNCE 39
EGF_CA pfam07645
Calcium-binding EGF domain;
800-827 6.93e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 37.99  E-value: 6.93e-04
                           10        20
                   ....*....|....*....|....*...
gi 148666879   800 DINECTSLLEPCRSGFSCINTVGSYTCQ 827
Cdd:pfam07645    1 DVDECATGTHNCPANTVCVNTIGSFECR 28
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
800-838 7.03e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 7.03e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 148666879  800 DINECTSLlEPCRSGFSCINTVGSYTCQrnplvCGRGYH 838
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCS-----CPPGYT 33
ANATO pfam01821
Anaphylotoxin-like domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated ...
435-470 8.47e-04

Anaphylotoxin-like domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 460347  Cd Length: 36  Bit Score: 38.03  E-value: 8.47e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 148666879   435 CCAAGQQWAIDNDECQEIPENGAQSDICRIAQRQCC 470
Cdd:pfam01821    1 CCLDGMKRNPMGRSCEQRAARIKEGPRCRKAFLQCC 36
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
915-936 9.38e-04

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 37.39  E-value: 9.38e-04
                           10        20
                   ....*....|....*....|..
gi 148666879   915 RCSCAAGFLLAADGKHCEDVNE 936
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
287-420 9.66e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 43.60  E-value: 9.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879   287 PPTAGSPGRLDSLPTRSPARPGFPVQEKEAEAKAGPEENLIPDAQVTPRSVMQEGAAPLPRSGLAALS------------ 354
Cdd:pfam03154  312 GPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSgpspfqmnsnlp 391
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 148666879   355 --PSLATDSSSEDPVKPSDHPTLSTLPPDRAQVSPSPETPEEIPQHPQLLPrfRAEEDIDPNSVHSVP 420
Cdd:pfam03154  392 ppPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPP--PAASHPPTSGLHQVP 457
EGF_CA smart00179
Calcium-binding EGF-like domain;
709-745 1.16e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.61  E-value: 1.16e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 148666879    709 DINECVTDlHTCTRAEHCVNTPGSFQCykalTCEPGY 745
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRC----ECPPGY 32
PHA03247 PHA03247
large tegument protein UL36; Provisional
290-424 1.16e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  290 AGSPGRLDSLPTRSPARPGFPVQEKEAEAKAGPEEnliPDAQVTPRSVMQEGAAPLPRSGLAALSPSLATDSSSEDPvkp 369
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG---PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP--- 2804
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  370 SDHPTL-----STLPPDRAQVSPSPETPEEIPQHPQLLPRFRAEEDIDPNSVhsVPRGDL 424
Cdd:PHA03247 2805 ADPPAAvlapaAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV--APGGDV 2862
EGF_CA smart00179
Calcium-binding EGF-like domain;
754-790 1.49e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.23  E-value: 1.49e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 148666879    754 DVDECVTGtHNCQAGFSCQNTKGSFYCQarqrCMDGF 790
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRCE----CPPGY 32
ANATO smart00104
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
511-543 1.93e-03

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 197517  Cd Length: 35  Bit Score: 36.93  E-value: 1.93e-03
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 148666879    511 CCGLGLRVRAEGQSCESNPNLGY--PCNHVMLSCC 543
Cdd:smart00104    1 CCADGMRLAPMGETCEERAARINsgDCRKAFLQCC 35
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
594-634 2.34e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.85  E-value: 2.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 148666879  594 DQDECLMLPGELCQHLCINTVGSYRCACFPGFElqgdGRTC 634
Cdd:cd00054     1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNC 37
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
216-413 3.95e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  216 QAGAEGPPAALGGGNLPPSSIRVTPWPVALPRPTAAAALGPPAPVQAKArrvtldteedeeeeeeetlvtePPTAGSPGR 295
Cdd:PRK12323  368 SGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAA----------------------RAVAAAPAR 425
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  296 ldslptRSPARPGFPVQEKEAEAKAGPEENLIPDAQVTPRSVMQEGAAPLPRSGLAALSPSLATDSSSEDPVKPSDHPTL 375
Cdd:PRK12323  426 ------RSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW 499
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 148666879  376 STLPPDRAQVSPSPETPEEIPQHPQLLPRFRAEEDIDP 413
Cdd:PRK12323  500 EELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDA 537
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
972-1014 4.34e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.08  E-value: 4.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 148666879  972 DIDECAQGAGILCTFRCVNVPGSYQCACPEqGYTmmanGRSCK 1014
Cdd:cd00054     1 DIDECASGNPCQNGGTCVNTVGSYRCSCPP-GYT----GRNCE 38
EGF_CA smart00179
Calcium-binding EGF-like domain;
1015-1050 4.73e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.07  E-value: 4.73e-03
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 148666879   1015 DLDECALGtHNCSEAETCHNIQGSFRClrfDCPPNY 1050
Cdd:smart00179    1 DIDECASG-NPCQNGGTCVNTVGSYRC---ECPPGY 32
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
692-712 5.76e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.46  E-value: 5.76e-03
                           10        20
                   ....*....|....*....|.
gi 148666879   692 CSCFPGYAIMADGVSCEDINE 712
Cdd:pfam12662    2 CSCPPGYQLDPDGRTCVDIDE 22
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
842-880 5.85e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 39.68  E-value: 5.85e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 148666879  842 EGSECVDVNECETGVHRCGegQLCYNLPGSYRCDCKPGF 880
Cdd:cd01475   180 QGKICVVPDLCATLSHVCQ--QVCISTPGSYLCACTEGY 216
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
754-790 6.19e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 35.69  E-value: 6.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 148666879  754 DVDECVTGtHNCQAGFSCQNTKGSFYCQarqrCMDGF 790
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCS----CPPGY 32
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
675-707 7.05e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 35.30  E-value: 7.05e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 148666879   675 DNGPCRQVCRVVGDTAMCSCFPGYAIMADGVSC 707
Cdd:pfam14670    4 NNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
851-883 8.47e-03

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 35.15  E-value: 8.47e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 148666879  851 ECETGvHRCGEGQLCYNLPGSYRCDCKPGFQRD 883
Cdd:cd00053     1 ECAAS-NPCSNGGTCVNTPGSYRCVCPPGYTGD 32
PHA03247 PHA03247
large tegument protein UL36; Provisional
288-421 9.60e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 9.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  288 PTAGSPGRLDSLPTRSPAR----PGFPVQ-EKEAEAKAGPEENLIPDAQVTPRSVMQEGAAPLPRSGL-------AALSP 355
Cdd:PHA03247 2866 PPSRSPAAKPAAPARPPVRrlarPAVSRStESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPpppprpqPPLAP 2945
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148666879  356 SLATDSSSEdPVKPSDHPTLSTLPPDRAQV----SPSPETPEEIPQHPQllprfraeediDPNSVHSVPR 421
Cdd:PHA03247 2946 TTDPAGAGE-PSGAVPQPWLGALVPGRVAVprfrVPQPAPSREAPASST-----------PPLTGHSLSR 3003
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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