NCBI Conserved Domain Search

NCBI

3D Macromolecular Structures

Conserved Domains

Conserved domains on [gi|148695987|gb|EDL27934|]

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mCG6533 [Mus musculus]

Protein Classification

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List of domain hits

Name

Accession

Description

Interval

E-value

KNL1_NTD

N-terminal domain found in kinetochore scaffold 1 (KNL1) and similar proteins; Kinetochore ...

20-75

2.20e-21

N-terminal domain found in kinetochore scaffold 1 (KNL1) and similar proteins; Kinetochore scaffold 1 (KNL1), also called ALL1-fused gene from chromosome 15q14 protein (AF15q14), Bub-linking kinetochore protein (Blinkin), cancer susceptibility candidate gene 5 protein (CASC5), cancer/testis antigen 29 (CT29), kinetochore-null protein 1, or protein D40/AF15q14, plays crucial roles during mitosis. It is essential for spindle-assembly checkpoint (SAC) signaling and for correct chromosome alignment. It is required for attachment of the kinetochores to the spindle microtubules. KNL1 directly links BUB1 and BUB1B to kinetochores. It is part of the MIS12 complex, which may be fundamental for kinetochore formation and proper chromosome segregation during mitosis. KNL1 also acts in coordination with CENPK to recruit the NDC80 complex to the outer kinetochore. This model corresponds to a small conserved region at the N-terminus of KNL1, which is responsible for the binding of protein phosphatase 1 (PP1). PP1 regulates SAC silencing and mitotic exit, and is targeted to kinetochores, in part, by KNL1.

:

Pssm-ID: 439316 Cd Length: 56 Bit Score: 88.94 E-value: 2.20e-21

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 148695987   20 RRQHSSILKPPRSPLQDLKCGNQTNQEPNPPRKRKSSRRVSFADTIKVFQTESHMK 75
Cdd:cd21853     1 KRRRSSILKPPRSPLLDLDEGNEQNQDLNKKKKRRSSRRVSFADTIQVKEFEKDAK 56

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

1002-1026

1.44e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 43.19 E-value: 1.44e-05

                           10        20
                   ....*....|....*....|....*
gi 148695987  1002 PMDKTVMFVDNFGDLDVTRSHTVFI 1026
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

804-826

3.70e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 42.04 E-value: 3.70e-05

                           10        20
                   ....*....|....*....|...
gi 148695987   804 DKTMMSIDDHEELDMTKSHTVFI 826
Cdd:pfam19221    3 DKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

721-746

5.80e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 41.27 E-value: 5.80e-05

                           10        20
                   ....*....|....*....|....*.
gi 148695987   721 KIDKTILFSEgNEGDMDITKSCTVKI 746
Cdd:pfam19221    1 PGDKTVVFSS-DANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

115-137

3.20e-04

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 39.34 E-value: 3.20e-04

                           10        20
                   ....*....|....*....|....
gi 148695987   115 NDQTVIF-SDENQMDLTASHTVMI 137
Cdd:pfam19221    2 GDKTVVFsSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

451-472

2.37e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 36.65 E-value: 2.37e-03

                           10        20
                   ....*....|....*....|....
gi 148695987   451 REKTIYL--EEDSMDITKSHTIAI 472
Cdd:pfam19221    2 GDKTVVFssDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

245-269

2.56e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 36.65 E-value: 2.56e-03

                           10        20
                   ....*....|....*....|....*
gi 148695987   245 SSNRTRIFREQDDGMNLTQCHTACI 269
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

619-643

5.89e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

:

Pssm-ID: 466004 Cd Length: 25 Bit Score: 35.87 E-value: 5.89e-03

                           10        20
                   ....*....|....*....|....*
gi 148695987   619 CSHHKIMYSEELQTMDLTKSHTIVI 643
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

Name

Accession

Description

Interval

E-value

KNL1_NTD

N-terminal domain found in kinetochore scaffold 1 (KNL1) and similar proteins; Kinetochore ...

20-75

2.20e-21

N-terminal domain found in kinetochore scaffold 1 (KNL1) and similar proteins; Kinetochore scaffold 1 (KNL1), also called ALL1-fused gene from chromosome 15q14 protein (AF15q14), Bub-linking kinetochore protein (Blinkin), cancer susceptibility candidate gene 5 protein (CASC5), cancer/testis antigen 29 (CT29), kinetochore-null protein 1, or protein D40/AF15q14, plays crucial roles during mitosis. It is essential for spindle-assembly checkpoint (SAC) signaling and for correct chromosome alignment. It is required for attachment of the kinetochores to the spindle microtubules. KNL1 directly links BUB1 and BUB1B to kinetochores. It is part of the MIS12 complex, which may be fundamental for kinetochore formation and proper chromosome segregation during mitosis. KNL1 also acts in coordination with CENPK to recruit the NDC80 complex to the outer kinetochore. This model corresponds to a small conserved region at the N-terminus of KNL1, which is responsible for the binding of protein phosphatase 1 (PP1). PP1 regulates SAC silencing and mitotic exit, and is targeted to kinetochores, in part, by KNL1.

Pssm-ID: 439316 Cd Length: 56 Bit Score: 88.94 E-value: 2.20e-21

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 148695987   20 RRQHSSILKPPRSPLQDLKCGNQTNQEPNPPRKRKSSRRVSFADTIKVFQTESHMK 75
Cdd:cd21853     1 KRRRSSILKPPRSPLLDLDEGNEQNQDLNKKKKRRSSRRVSFADTIQVKEFEKDAK 56

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

1002-1026

1.44e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 43.19 E-value: 1.44e-05

                           10        20
                   ....*....|....*....|....*
gi 148695987  1002 PMDKTVMFVDNFGDLDVTRSHTVFI 1026
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

804-826

3.70e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 42.04 E-value: 3.70e-05

                           10        20
                   ....*....|....*....|...
gi 148695987   804 DKTMMSIDDHEELDMTKSHTVFI 826
Cdd:pfam19221    3 DKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

721-746

5.80e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 41.27 E-value: 5.80e-05

                           10        20
                   ....*....|....*....|....*.
gi 148695987   721 KIDKTILFSEgNEGDMDITKSCTVKI 746
Cdd:pfam19221    1 PGDKTVVFSS-DANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

115-137

3.20e-04

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 39.34 E-value: 3.20e-04

                           10        20
                   ....*....|....*....|....
gi 148695987   115 NDQTVIF-SDENQMDLTASHTVMI 137
Cdd:pfam19221    2 GDKTVVFsSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

451-472

2.37e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 36.65 E-value: 2.37e-03

                           10        20
                   ....*....|....*....|....
gi 148695987   451 REKTIYL--EEDSMDITKSHTIAI 472
Cdd:pfam19221    2 GDKTVVFssDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

245-269

2.56e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 36.65 E-value: 2.56e-03

                           10        20
                   ....*....|....*....|....*
gi 148695987   245 SSNRTRIFREQDDGMNLTQCHTACI 269
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

619-643

5.89e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 35.87 E-value: 5.89e-03

                           10        20
                   ....*....|....*....|....*
gi 148695987   619 CSHHKIMYSEELQTMDLTKSHTIVI 643
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

Name

Accession

Description

Interval

E-value

KNL1_NTD

N-terminal domain found in kinetochore scaffold 1 (KNL1) and similar proteins; Kinetochore ...

20-75

2.20e-21

N-terminal domain found in kinetochore scaffold 1 (KNL1) and similar proteins; Kinetochore scaffold 1 (KNL1), also called ALL1-fused gene from chromosome 15q14 protein (AF15q14), Bub-linking kinetochore protein (Blinkin), cancer susceptibility candidate gene 5 protein (CASC5), cancer/testis antigen 29 (CT29), kinetochore-null protein 1, or protein D40/AF15q14, plays crucial roles during mitosis. It is essential for spindle-assembly checkpoint (SAC) signaling and for correct chromosome alignment. It is required for attachment of the kinetochores to the spindle microtubules. KNL1 directly links BUB1 and BUB1B to kinetochores. It is part of the MIS12 complex, which may be fundamental for kinetochore formation and proper chromosome segregation during mitosis. KNL1 also acts in coordination with CENPK to recruit the NDC80 complex to the outer kinetochore. This model corresponds to a small conserved region at the N-terminus of KNL1, which is responsible for the binding of protein phosphatase 1 (PP1). PP1 regulates SAC silencing and mitotic exit, and is targeted to kinetochores, in part, by KNL1.

Pssm-ID: 439316 Cd Length: 56 Bit Score: 88.94 E-value: 2.20e-21

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 148695987   20 RRQHSSILKPPRSPLQDLKCGNQTNQEPNPPRKRKSSRRVSFADTIKVFQTESHMK 75
Cdd:cd21853     1 KRRRSSILKPPRSPLLDLDEGNEQNQDLNKKKKRRSSRRVSFADTIQVKEFEKDAK 56

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

1002-1026

1.44e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 43.19 E-value: 1.44e-05

                           10        20
                   ....*....|....*....|....*
gi 148695987  1002 PMDKTVMFVDNFGDLDVTRSHTVFI 1026
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

804-826

3.70e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 42.04 E-value: 3.70e-05

                           10        20
                   ....*....|....*....|...
gi 148695987   804 DKTMMSIDDHEELDMTKSHTVFI 826
Cdd:pfam19221    3 DKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

721-746

5.80e-05

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 41.27 E-value: 5.80e-05

                           10        20
                   ....*....|....*....|....*.
gi 148695987   721 KIDKTILFSEgNEGDMDITKSCTVKI 746
Cdd:pfam19221    1 PGDKTVVFSS-DANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

115-137

3.20e-04

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 39.34 E-value: 3.20e-04

                           10        20
                   ....*....|....*....|....
gi 148695987   115 NDQTVIF-SDENQMDLTASHTVMI 137
Cdd:pfam19221    2 GDKTVVFsSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

451-472

2.37e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 36.65 E-value: 2.37e-03

                           10        20
                   ....*....|....*....|....
gi 148695987   451 REKTIYL--EEDSMDITKSHTIAI 472
Cdd:pfam19221    2 GDKTVVFssDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

245-269

2.56e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 36.65 E-value: 2.56e-03

                           10        20
                   ....*....|....*....|....*
gi 148695987   245 SSNRTRIFREQDDGMNLTQCHTACI 269
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

MELT

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome ...

619-643

5.89e-03

MELT motif; The outer kinetochore protein scaffold KNL1 is essential for error-free chromosome segregation during mitosis and meiosis. A critical feature of KNL1 is an array of repeats containing MELT-like motifs. When phosphorylated, these motifs form docking sites for the BUB1-BUB3 dimer that regulates chromosome biorientation and the spindle assembly checkpoint. This entry mainly represents vertebrate proteins although MELT motifs are found much more widely.

Pssm-ID: 466004 Cd Length: 25 Bit Score: 35.87 E-value: 5.89e-03

                           10        20
                   ....*....|....*....|....*
gi 148695987   619 CSHHKIMYSEELQTMDLTKSHTIVI 643
Cdd:pfam19221    1 PGDKTVVFSSDANDMDITKSHTVNI 25

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01

References:

Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

Functional characterization of the conserved domain architecture found on the query. Click here to see more details.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options