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Conserved domains on  [gi|149023312|gb|EDL80206|]
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similar to chromosome 20 open reading frame 116 (predicted) [Rattus norvegicus]

Protein Classification

DDRGK domain-containing protein( domain architecture ID 12101890)

DDRGK domain-containing protein similar to Homo sapiens DDRGK domain-containing protein 1 that is a component of the UFM1 ribosome E3 ligase (UREL) complex, a multiprotein complex that catalyzes ufmylation of endoplasmic reticulum-docked proteins

CATH:  1.10.10.10
Gene Ontology:  GO:0044389
SCOP:  4000147

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DDRGK pfam09756
DDRGK domain; This is a family of proteins of approximately 300 residues, found in plants and ...
140-328 1.18e-62

DDRGK domain; This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif.


:

Pssm-ID: 370664 [Multi-domain]  Cd Length: 188  Bit Score: 197.57  E-value: 1.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149023312  140 GKIGAKKLRKLEEKQARKAQREAEEAEREERKRLESQREAEWKKEEERLRLKEEQKEEEERKAREEQARREHEEYLKLKE 219
Cdd:pfam09756   1 KKLGAKKRAKLELKEAKRQQREAEEEEREEREKLEEKREEEYKEREEREEEAEKEKEEEERKQEEEQERKEQEEYEKLKS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149023312  220 AFVVEEEGVSETMTEEQSHsFLTEFINYIKQSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPE 299
Cdd:pfam09756  81 QFVVEEEGTDKLSAEDESQ-LLEDFINYIKLKKVVLLEELAAEFGLKTQDVIDRIQDLEEQGSLTGVIDDRGKYIYITDE 159
                         170       180
                  ....*....|....*....|....*....
gi 149023312  300 ELAAVASFIRQRGRVSITELAQASNSLIS 328
Cdd:pfam09756 160 ELEAVANYINSKGRVSISELAEESNRLIS 188
 
Name Accession Description Interval E-value
DDRGK pfam09756
DDRGK domain; This is a family of proteins of approximately 300 residues, found in plants and ...
140-328 1.18e-62

DDRGK domain; This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif.


Pssm-ID: 370664 [Multi-domain]  Cd Length: 188  Bit Score: 197.57  E-value: 1.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149023312  140 GKIGAKKLRKLEEKQARKAQREAEEAEREERKRLESQREAEWKKEEERLRLKEEQKEEEERKAREEQARREHEEYLKLKE 219
Cdd:pfam09756   1 KKLGAKKRAKLELKEAKRQQREAEEEEREEREKLEEKREEEYKEREEREEEAEKEKEEEERKQEEEQERKEQEEYEKLKS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149023312  220 AFVVEEEGVSETMTEEQSHsFLTEFINYIKQSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPE 299
Cdd:pfam09756  81 QFVVEEEGTDKLSAEDESQ-LLEDFINYIKLKKVVLLEELAAEFGLKTQDVIDRIQDLEEQGSLTGVIDDRGKYIYITDE 159
                         170       180
                  ....*....|....*....|....*....
gi 149023312  300 ELAAVASFIRQRGRVSITELAQASNSLIS 328
Cdd:pfam09756 160 ELEAVANYINSKGRVSISELAEESNRLIS 188
 
Name Accession Description Interval E-value
DDRGK pfam09756
DDRGK domain; This is a family of proteins of approximately 300 residues, found in plants and ...
140-328 1.18e-62

DDRGK domain; This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif.


Pssm-ID: 370664 [Multi-domain]  Cd Length: 188  Bit Score: 197.57  E-value: 1.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149023312  140 GKIGAKKLRKLEEKQARKAQREAEEAEREERKRLESQREAEWKKEEERLRLKEEQKEEEERKAREEQARREHEEYLKLKE 219
Cdd:pfam09756   1 KKLGAKKRAKLELKEAKRQQREAEEEEREEREKLEEKREEEYKEREEREEEAEKEKEEEERKQEEEQERKEQEEYEKLKS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149023312  220 AFVVEEEGVSETMTEEQSHsFLTEFINYIKQSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPE 299
Cdd:pfam09756  81 QFVVEEEGTDKLSAEDESQ-LLEDFINYIKLKKVVLLEELAAEFGLKTQDVIDRIQDLEEQGSLTGVIDDRGKYIYITDE 159
                         170       180
                  ....*....|....*....|....*....
gi 149023312  300 ELAAVASFIRQRGRVSITELAQASNSLIS 328
Cdd:pfam09756 160 ELEAVANYINSKGRVSISELAEESNRLIS 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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