heterochromatin protein 1, binding protein 3, isoform CRA_e [Rattus norvegicus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
180-264 | 2.58e-23 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber : Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 94.23 E-value: 2.58e-23
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
365-432 | 2.89e-20 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. : Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 84.88 E-value: 2.89e-20
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
289-349 | 4.46e-11 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. : Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 58.69 E-value: 4.46e-11
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PRK13808 super family | cl31642 | adenylate kinase; Provisional |
494-568 | 8.19e-04 | |||
adenylate kinase; Provisional The actual alignment was detected with superfamily member PRK13808: Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 41.80 E-value: 8.19e-04
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
180-264 | 2.58e-23 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 94.23 E-value: 2.58e-23
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
183-253 | 7.02e-22 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 89.51 E-value: 7.02e-22
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
365-432 | 2.89e-20 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 84.88 E-value: 2.89e-20
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H15 | smart00526 | Domain in histone families 1 and 5; |
180-246 | 1.61e-15 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 71.07 E-value: 1.61e-15
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
289-349 | 4.46e-11 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 58.69 E-value: 4.46e-11
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H15 | smart00526 | Domain in histone families 1 and 5; |
369-425 | 1.03e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 57.59 E-value: 1.03e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
276-342 | 1.57e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 56.82 E-value: 1.57e-10
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H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
369-435 | 1.18e-06 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 46.85 E-value: 1.18e-06
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
494-568 | 8.19e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 41.80 E-value: 8.19e-04
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
180-264 | 2.58e-23 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 94.23 E-value: 2.58e-23
|
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
183-253 | 7.02e-22 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 89.51 E-value: 7.02e-22
|
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
365-432 | 2.89e-20 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 84.88 E-value: 2.89e-20
|
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H15 | smart00526 | Domain in histone families 1 and 5; |
180-246 | 1.61e-15 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 71.07 E-value: 1.61e-15
|
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
289-349 | 4.46e-11 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 58.69 E-value: 4.46e-11
|
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H15 | smart00526 | Domain in histone families 1 and 5; |
369-425 | 1.03e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 57.59 E-value: 1.03e-10
|
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H15 | smart00526 | Domain in histone families 1 and 5; |
276-342 | 1.57e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 56.82 E-value: 1.57e-10
|
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H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
369-435 | 1.18e-06 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 46.85 E-value: 1.18e-06
|
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
494-568 | 8.19e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 41.80 E-value: 8.19e-04
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valS | PRK14900 | valyl-tRNA synthetase; Provisional |
479-555 | 1.76e-03 | |||
valyl-tRNA synthetase; Provisional Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 41.52 E-value: 1.76e-03
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
477-568 | 2.57e-03 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 40.26 E-value: 2.57e-03
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
476-568 | 8.17e-03 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 38.72 E-value: 8.17e-03
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Blast search parameters | ||||
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