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Conserved domains on  [gi|149063979|gb|EDM14249|]
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ring finger protein 31 (predicted), isoform CRA_b [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
E3_UbLigase_RBR super family cl39486
E3 Ubiquitin Ligase RBR C-terminal domain; This is the C-terminal domain of HOIP present in ...
 1-81 1.34e-35

E3 Ubiquitin Ligase RBR C-terminal domain; This is the C-terminal domain of HOIP present in Homo sapiens. HOIP synthesize the linear ubiquitin chains that help control innate immunity and inflammation. This region has an RBR domain which catalyzes the transfer of ubiquitin onto a substrate.


The actual alignment was detected with superfamily member pfam18091:

Pssm-ID: 436265  Cd Length: 92  Bit Score: 117.47  E-value: 1.34e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149063979    1 MFNTEPPAGtRAVPGGGCRVMEQKEVPSGFRDEACGKETPPGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETATA 80
Cdd:pfam18091  13 PFDTEEPAG-PKCSTGTCGVMEQKETPSGVKDEACGRDVLPGHAGLCELHYKEYLVELINENKLDPVVLFTIDELRTELQ 91


                  .
gi 149063979   81 R 81
Cdd:pfam18091  92 R 92
 
Name Accession Description Interval E-value
E3_UbLigase_RBR pfam18091
E3 Ubiquitin Ligase RBR C-terminal domain; This is the C-terminal domain of HOIP present in ...
 1-81 1.34e-35

E3 Ubiquitin Ligase RBR C-terminal domain; This is the C-terminal domain of HOIP present in Homo sapiens. HOIP synthesize the linear ubiquitin chains that help control innate immunity and inflammation. This region has an RBR domain which catalyzes the transfer of ubiquitin onto a substrate.


Pssm-ID: 436265  Cd Length: 92  Bit Score: 117.47  E-value: 1.34e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149063979    1 MFNTEPPAGtRAVPGGGCRVMEQKEVPSGFRDEACGKETPPGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETATA 80
Cdd:pfam18091  13 PFDTEEPAG-PKCSTGTCGVMEQKETPSGVKDEACGRDVLPGHAGLCELHYKEYLVELINENKLDPVVLFTIDELRTELQ 91


                  .
gi 149063979   81 R 81
Cdd:pfam18091  92 R 92
 
Name Accession Description Interval E-value
E3_UbLigase_RBR pfam18091
E3 Ubiquitin Ligase RBR C-terminal domain; This is the C-terminal domain of HOIP present in ...
 1-81 1.34e-35

E3 Ubiquitin Ligase RBR C-terminal domain; This is the C-terminal domain of HOIP present in Homo sapiens. HOIP synthesize the linear ubiquitin chains that help control innate immunity and inflammation. This region has an RBR domain which catalyzes the transfer of ubiquitin onto a substrate.


Pssm-ID: 436265  Cd Length: 92  Bit Score: 117.47  E-value: 1.34e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149063979    1 MFNTEPPAGtRAVPGGGCRVMEQKEVPSGFRDEACGKETPPGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETATA 80
Cdd:pfam18091  13 PFDTEEPAG-PKCSTGTCGVMEQKETPSGVKDEACGRDVLPGHAGLCELHYKEYLVELINENKLDPVVLFTIDELRTELQ 91


                  .
gi 149063979   81 R 81
Cdd:pfam18091  92 R 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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