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Conserved domains on  [gi|149067646|gb|EDM17198|]
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integrin alpha M [Rattus norvegicus]

Protein Classification

integrin alpha( domain architecture ID 11546373)

integrin alpha forms a heterodimer with integrin beta to mediate cell-extracellular matrix and cell-cell interactions; integrin alpha is a component of integrin, a cell adhesion molecule that mediates cell-extracellular matrix and cell-cell interactions

Gene Ontology:  GO:0007155|GO:0008305|GO:0005178|GO:0046872
PubMed:  3028640|2199285|12297042|12826403|14689578|12361595|12234368

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 149-324 1.01e-79

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


:

Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 258.44  E-value: 1.01e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  149 SDIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQK--SKTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTK 226
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIgpTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEKFGDPLNyEDVIPEAEEAGIIRYVIGVGNAFHKPQSRRELDTIASK 306
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159

                         170
                  ....*....|....*...
gi 149067646  307 PAGDHVFQVDNFEALNTI 324
Cdd:cd01469   160 PPEEHFFNVTDFAALKDI 177
Integrin_alpha2 super family cl26747
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 615-1031 1.69e-32

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


The actual alignment was detected with superfamily member pfam08441:

Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 132.44  E-value: 1.69e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   615 QPVLRLEATMEFSPKNLARSVFACQEEVVKNkdagevrVCLHVR---KNTKDRLREGDIqsTVTYDLALDPGR---SVVR 688
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLTGTPV-------SCFTVRacfSYTGKPIPNPSL--VLNYELELDRQKkkgLPPR 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   689 AFFDETKNGILRRiRVFGLTQK---CETLKLILPDCVDNSVSPIILRLNYTLVGEPL--RSSRDLRPVLAMEAQRIFTAM 763
Cdd:pfam08441   72 VLFLDSQQPSLTG-TLVLLSQGrkvCRTTKAYLRDEFRDKLSPIVISLNYSLRVDPRapSDLPGLKPILDQNQPSTVQEQ 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   764 FPFEKNCGNDTICQDDLSITVSSIRV---NTLVVGDSRDFDVSVTLRNDGEDSYGTKVTCYYPSGLSYRKVsasQNQFSK 840
Cdd:pfam08441  151 ANFLKDCGEDNVCVPDLQLSAKFDSResdEPLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGV---RREGSE 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   841 KPwrVIAEPSSSEGQGVLKStiwDINHPiFPANSEVTFNVTFDVDSDASLGNKLLLKVVVTSENNVSRTDKTESqLELPV 920
Cdd:pfam08441  228 KQ--LSCTAKKENSTRQVVC---DLGNP-MKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVS-LKVPV 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   921 KYA-------------IYMVVTSGESSIKYlnFTASEMTSKViQHQYQFNNLGQRSFPVSV--VFWiPVQIN-------- 977
Cdd:pfam08441  301 VAEaqlslsgvskpdqVVGGSVKGESAMKP--RSEEDIGPLV-EHTYEVINNGPSTVSGASleISW-PYELSngkwllyl 376

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 149067646   978 -KVTIWDPPQVTFSQN---------LSSVCRTEQKSPSH--SKFQDELERTPV------LNCSVAV-CKRIQC 1031
Cdd:pfam08441  377 lDVQGQGKGECSPQNEinplnltqsLESSKPLRTSRVHHvvKRRDVLKSEKATqtasvlLSCDSGArCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 516-569 3.09e-11

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 59.70  E-value: 3.09e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 149067646    516 PWGRFGAALTVLGDVNGDKLTDVAIGAPGEQENQ--GAVYIFHGASVASISTPHSQ 569
Cdd:smart00191    1 PGSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGetGAVYVYFGSSGGGNSIPLQN 56
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 453-509 5.79e-08

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 50.45  E-value: 5.79e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 149067646    453 IGSYFGASLCSV-DMDADGNTNLiLIGAPHHYEKTRGGQVSVCPLPRGRARWQCEAIL 509
Cdd:smart00191    1 PGSYFGYSVAGVgDVNGDGYPDL-LVGAPRANDAGETGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 581-605 7.54e-04

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 38.51  E-value: 7.54e-04
                            10        20
                    ....*....|....*....|....*
gi 149067646    581 QYFGQSLSGGKDLTMDGLMDLAVGA 605
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGA 27
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1128-1140 1.05e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


:

Pssm-ID: 459778  Cd Length: 15  Bit Score: 37.48  E-value: 1.05e-03
                           10
                   ....*....|...
gi 149067646  1128 KLGFFKRQYKDMM 1140
Cdd:pfam00357    1 KCGFFKRNYPPQE 13
 
Name Accession Description Interval E-value
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 149-324 1.01e-79

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 258.44  E-value: 1.01e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  149 SDIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQK--SKTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTK 226
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIgpTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEKFGDPLNyEDVIPEAEEAGIIRYVIGVGNAFHKPQSRRELDTIASK 306
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159

                         170
                  ....*....|....*...
gi 149067646  307 PAGDHVFQVDNFEALNTI 324
Cdd:cd01469   160 PPEEHFFNVTDFAALKDI 177
VWA pfam00092
von Willebrand factor type A domain;
150-327 1.99e-49

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 172.84  E-value: 1.99e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTK- 226
Cdd:pfam00092    1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGpdGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEK-FGDPlnyEDVIPEAEEAGIIRYVIGVGNAfhkpqSRRELDTIAS 305
Cdd:pfam00092   81 TGKALKYALENLFSSAAGARPGAPKVVVLLTDGRSqDGDP---EEVARELKSAGVTVFAVGVGNA-----DDEELRKIAS 152

                          170       180
                   ....*....|....*....|..
gi 149067646   306 KPAGDHVFQVDNFEALNTIRNQ 327
Cdd:pfam00092  153 EPGEGHVFTVSDFEALEDLQDQ 174
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 150-321 5.88e-42

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 151.45  E-value: 5.88e-42
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646    150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIR-QLNGRTK 226
Cdd:smart00327    1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGpdGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSyKLGGGTN 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646    227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAFhkpqSRRELDTIASK 306
Cdd:smart00327   81 LGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDGPKDLLKAAKELKRSGVKVFVVGVGNDV----DEEELKKLASA 156

                           170
                    ....*....|....*
gi 149067646    307 PAGDHVFQVDNFEAL 321
Cdd:smart00327  157 PGGVYVFLPELLDLL 171
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 615-1031 1.69e-32

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 132.44  E-value: 1.69e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   615 QPVLRLEATMEFSPKNLARSVFACQEEVVKNkdagevrVCLHVR---KNTKDRLREGDIqsTVTYDLALDPGR---SVVR 688
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLTGTPV-------SCFTVRacfSYTGKPIPNPSL--VLNYELELDRQKkkgLPPR 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   689 AFFDETKNGILRRiRVFGLTQK---CETLKLILPDCVDNSVSPIILRLNYTLVGEPL--RSSRDLRPVLAMEAQRIFTAM 763
Cdd:pfam08441   72 VLFLDSQQPSLTG-TLVLLSQGrkvCRTTKAYLRDEFRDKLSPIVISLNYSLRVDPRapSDLPGLKPILDQNQPSTVQEQ 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   764 FPFEKNCGNDTICQDDLSITVSSIRV---NTLVVGDSRDFDVSVTLRNDGEDSYGTKVTCYYPSGLSYRKVsasQNQFSK 840
Cdd:pfam08441  151 ANFLKDCGEDNVCVPDLQLSAKFDSResdEPLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGV---RREGSE 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   841 KPwrVIAEPSSSEGQGVLKStiwDINHPiFPANSEVTFNVTFDVDSDASLGNKLLLKVVVTSENNVSRTDKTESqLELPV 920
Cdd:pfam08441  228 KQ--LSCTAKKENSTRQVVC---DLGNP-MKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVS-LKVPV 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   921 KYA-------------IYMVVTSGESSIKYlnFTASEMTSKViQHQYQFNNLGQRSFPVSV--VFWiPVQIN-------- 977
Cdd:pfam08441  301 VAEaqlslsgvskpdqVVGGSVKGESAMKP--RSEEDIGPLV-EHTYEVINNGPSTVSGASleISW-PYELSngkwllyl 376

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 149067646   978 -KVTIWDPPQVTFSQN---------LSSVCRTEQKSPSH--SKFQDELERTPV------LNCSVAV-CKRIQC 1031
Cdd:pfam08441  377 lDVQGQGKGECSPQNEinplnltqsLESSKPLRTSRVHHvvKRRDVLKSEKATqtasvlLSCDSGArCVVIRC 449
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 145-328 3.19e-13

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 71.12  E-value: 3.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  145 PQQESDIAFLIDGSGSINSID-FQKMKEFVSTVMDQFQKsKTLFSLMQYSDEFRTHFTFndfkrnpdPKSHVRPIRQLN- 222
Cdd:COG1240    89 PQRGRDVVLVVDASGSMAAENrLEAAKGALLDFLDDYRP-RDRVGLVAFGGEAEVLLPL--------TRDREALKRALDe 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  223 ----GRTKTASGIRKVVRELfqkiNGARDNAAKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAfhkPQSRR 298
Cdd:COG1240   160 lppgGGTPLGDALALALELL----KRADPARRKVIVLLTDGRDNAGRIDPLEAAELAAAAGIRIYTIGVGTE---AVDEG 232

                         170       180       190
                  ....*....|....*....|....*....|
gi 149067646  299 ELDTIASKpAGDHVFQVDNFEALNTIRNQL 328
Cdd:COG1240   233 LLREIAEA-TGGRYFRADDLSELAAIYREI 261
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 516-569 3.09e-11

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 59.70  E-value: 3.09e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 149067646    516 PWGRFGAALTVLGDVNGDKLTDVAIGAPGEQENQ--GAVYIFHGASVASISTPHSQ 569
Cdd:smart00191    1 PGSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGetGAVYVYFGSSGGGNSIPLQN 56
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 520-555 5.00e-08

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 49.82  E-value: 5.00e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 149067646   520 FGAALTVlGDVNGDKLTDVAIGAPGE-QENQGAVYIF 555
Cdd:pfam01839    1 FGYSVAV-GDLNGDGYADLAVGAPGEgGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 453-509 5.79e-08

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 50.45  E-value: 5.79e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 149067646    453 IGSYFGASLCSV-DMDADGNTNLiLIGAPHHYEKTRGGQVSVCPLPRGRARWQCEAIL 509
Cdd:smart00191    1 PGSYFGYSVAGVgDVNGDGYPDL-LVGAPRANDAGETGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 581-605 7.54e-04

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 38.51  E-value: 7.54e-04
                            10        20
                    ....*....|....*....|....*
gi 149067646    581 QYFGQSLSGGKDLTMDGLMDLAVGA 605
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGA 27
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1128-1140 1.05e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


Pssm-ID: 459778  Cd Length: 15  Bit Score: 37.48  E-value: 1.05e-03
                           10
                   ....*....|...
gi 149067646  1128 KLGFFKRQYKDMM 1140
Cdd:pfam00357    1 KCGFFKRNYPPQE 13
 
Name Accession Description Interval E-value
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 149-324 1.01e-79

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 258.44  E-value: 1.01e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  149 SDIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQK--SKTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTK 226
Cdd:cd01469     1 MDIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIgpTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEKFGDPLNyEDVIPEAEEAGIIRYVIGVGNAFHKPQSRRELDTIASK 306
Cdd:cd01469    81 TATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159

                         170
                  ....*....|....*...
gi 149067646  307 PAGDHVFQVDNFEALNTI 324
Cdd:cd01469   160 PPEEHFFNVTDFAALKDI 177
VWA pfam00092
von Willebrand factor type A domain;
150-327 1.99e-49

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 172.84  E-value: 1.99e-49
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTK- 226
Cdd:pfam00092    1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGpdGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTTn 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEK-FGDPlnyEDVIPEAEEAGIIRYVIGVGNAfhkpqSRRELDTIAS 305
Cdd:pfam00092   81 TGKALKYALENLFSSAAGARPGAPKVVVLLTDGRSqDGDP---EEVARELKSAGVTVFAVGVGNA-----DDEELRKIAS 152

                          170       180
                   ....*....|....*....|..
gi 149067646   306 KPAGDHVFQVDNFEALNTIRNQ 327
Cdd:pfam00092  153 EPGEGHVFTVSDFEALEDLQDQ 174
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 150-321 5.88e-42

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 151.45  E-value: 5.88e-42
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646    150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIR-QLNGRTK 226
Cdd:smart00327    1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGpdGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSyKLGGGTN 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646    227 TASGIRKVVRELFQKINGARDNAAKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAFhkpqSRRELDTIASK 306
Cdd:smart00327   81 LGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDGPKDLLKAAKELKRSGVKVFVVGVGNDV----DEEELKKLASA 156

                           170
                    ....*....|....*
gi 149067646    307 PAGDHVFQVDNFEAL 321
Cdd:smart00327  157 PGGVYVFLPELLDLL 171
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 150-313 1.60e-34

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 129.72  E-value: 1.60e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGR-TK 226
Cdd:cd01450     2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGpdKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGGgTN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQKINgARDNAAKILVVITDGEKFGDPlNYEDVIPEAEEAGIIRYVIGVGNAfhkpqSRRELDTIASK 306
Cdd:cd01450    82 TGKALQYALEQLFSESN-ARENVPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGIKVFVVGVGPA-----DEEELREIASC 154


                  ....*..
gi 149067646  307 PAGDHVF 313
Cdd:cd01450   155 PSERHVF 161
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 150-318 6.37e-33

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 125.09  E-value: 6.37e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQ--KSKTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTKT 227
Cdd:cd01482     2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEigPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  228 ASGIRKVVRELFQKINGARDNAAKILVVITDGeKFGDplNYEDVIPEAEEAGIIRYVIGVGNAfhkpqSRRELDTIASKP 307
Cdd:cd01482    82 GKALTHVREKNFTPDAGARPGVPKVVILITDG-KSQD--DVELPARVLRNLGVNVFAVGVKDA-----DESELKMIASKP 153

                         170
                  ....*....|.
gi 149067646  308 AGDHVFQVDNF 318
Cdd:cd01482   154 SETHVFNVADF 164
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 615-1031 1.69e-32

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 132.44  E-value: 1.69e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   615 QPVLRLEATMEFSPKNLARSVFACQEEVVKNkdagevrVCLHVR---KNTKDRLREGDIqsTVTYDLALDPGR---SVVR 688
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLTGTPV-------SCFTVRacfSYTGKPIPNPSL--VLNYELELDRQKkkgLPPR 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   689 AFFDETKNGILRRiRVFGLTQK---CETLKLILPDCVDNSVSPIILRLNYTLVGEPL--RSSRDLRPVLAMEAQRIFTAM 763
Cdd:pfam08441   72 VLFLDSQQPSLTG-TLVLLSQGrkvCRTTKAYLRDEFRDKLSPIVISLNYSLRVDPRapSDLPGLKPILDQNQPSTVQEQ 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   764 FPFEKNCGNDTICQDDLSITVSSIRV---NTLVVGDSRDFDVSVTLRNDGEDSYGTKVTCYYPSGLSYRKVsasQNQFSK 840
Cdd:pfam08441  151 ANFLKDCGEDNVCVPDLQLSAKFDSResdEPLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGV---RREGSE 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   841 KPwrVIAEPSSSEGQGVLKStiwDINHPiFPANSEVTFNVTFDVDSDASLGNKLLLKVVVTSENNVSRTDKTESqLELPV 920
Cdd:pfam08441  228 KQ--LSCTAKKENSTRQVVC---DLGNP-MKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVS-LKVPV 300

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   921 KYA-------------IYMVVTSGESSIKYlnFTASEMTSKViQHQYQFNNLGQRSFPVSV--VFWiPVQIN-------- 977
Cdd:pfam08441  301 VAEaqlslsgvskpdqVVGGSVKGESAMKP--RSEEDIGPLV-EHTYEVINNGPSTVSGASleISW-PYELSngkwllyl 376

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 149067646   978 -KVTIWDPPQVTFSQN---------LSSVCRTEQKSPSH--SKFQDELERTPV------LNCSVAV-CKRIQC 1031
Cdd:pfam08441  377 lDVQGQGKGECSPQNEinplnltqsLESSKPLRTSRVHHvvKRRDVLKSEKATqtasvlLSCDSGArCVVIRC 449
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 150-318 1.10e-30

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 118.87  E-value: 1.10e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTKT 227
Cdd:cd01472     2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGpdGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  228 ASGIRKVVRELFQKINGARDNAAKILVVITDGEkfgdplNYEDVIPEAEE---AGIIRYVIGVGNAfhkpqSRRELDTIA 304
Cdd:cd01472    82 GKALKYVRENLFTEASGSREGVPKVLVVITDGK------SQDDVEEPAVElkqAGIEVFAVGVKNA-----DEEELKQIA 150

                         170
                  ....*....|....
gi 149067646  305 SKPAGDHVFQVDNF 318
Cdd:cd01472   151 SDPKELYVFNVADF 164
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 150-332 1.43e-29

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 117.87  E-value: 1.43e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKSK--TLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTKT 227
Cdd:cd01475     4 DLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPdaTRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETGTMT 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  228 ASGIRKVVRELFQKINGAR---DNAAKILVVITDGEkfgdPLNY-EDVIPEAEEAGIIRYVIGVGNAfhkpqSRRELDTI 303
Cdd:cd01475    84 GLAIQYAMNNAFSEAEGARpgsERVPRVGIVVTDGR----PQDDvSEVAAKARALGIEMFAVGVGRA-----DEEELREI 154

                         170       180
                  ....*....|....*....|....*....
gi 149067646  304 ASKPAGDHVFQVDNFEALNTIRNQLQEKI 332
Cdd:cd01475   155 ASEPLADHVFYVEDFSTIEELTKKFQGKI 183
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 150-313 6.78e-26

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 104.96  E-value: 6.78e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKS--KTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIR-QLNGRTK 226
Cdd:cd00198     2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASppGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKkGLGGGTN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQkinGARDNAAKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNafhkPQSRRELDTIASK 306
Cdd:cd00198    82 IGAALRLALELLKS---AKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD----DANEDELKEIADK 154


                  ....*..
gi 149067646  307 PAGDHVF 313
Cdd:cd00198   155 TTGGAVF 161
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 150-318 3.26e-18

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 83.14  E-value: 3.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQ--KSKTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGR-TK 226
Cdd:cd01481     2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDvgPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGGSqLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQKINGAR--DNAAKILVVITDGEKFGDplnYEDVIPEAEEAGIIRYVIGVGNAfhkpqSRRELDTIA 304
Cdd:cd01481    82 TGSALDYVVKNLFTKSAGSRieEGVPQFLVLITGGKSQDD---VERPAVALKRAGIVPFAIGARNA-----DLAELQQIA 153

                         170
                  ....*....|....
gi 149067646  305 SKPagDHVFQVDNF 318
Cdd:cd01481   154 FDP--SFVFQVSDF 165
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 149-313 1.43e-15

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 75.51  E-value: 1.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  149 SDIAFLIDGSGSINSIdFQKMKEFVSTVMDQFQ--KSKTLFSLMQYSDEFRTHFTFNdFKRNPDPKSHVRPI---RQLNG 223
Cdd:cd01476     1 LDLLFVLDSSGSVRGK-FEKYKKYIERIVEGLEigPTATRVALITYSGRGRQRVRFN-LPKHNDGEELLEKVdnlRFIGG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  224 RTKTASGIRKVVrELFQKINGARDNAAKILVVITDGEKFGDPLNYEDVIpeAEEAGIIRYVIGVGnaFHKPQSRRELDTI 303
Cdd:cd01476    79 TTATGAAIEVAL-QQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARIL--RAVPNIETFAVGTG--DPGTVDTEELHSI 153

                         170
                  ....*....|
gi 149067646  304 ASkpAGDHVF 313
Cdd:cd01476   154 TG--NEDHIF 161
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 145-328 3.19e-13

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 71.12  E-value: 3.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  145 PQQESDIAFLIDGSGSINSID-FQKMKEFVSTVMDQFQKsKTLFSLMQYSDEFRTHFTFndfkrnpdPKSHVRPIRQLN- 222
Cdd:COG1240    89 PQRGRDVVLVVDASGSMAAENrLEAAKGALLDFLDDYRP-RDRVGLVAFGGEAEVLLPL--------TRDREALKRALDe 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  223 ----GRTKTASGIRKVVRELfqkiNGARDNAAKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAfhkPQSRR 298
Cdd:COG1240   160 lppgGGTPLGDALALALELL----KRADPARRKVIVLLTDGRDNAGRIDPLEAAELAAAAGIRIYTIGVGTE---AVDEG 232

                         170       180       190
                  ....*....|....*....|....*....|
gi 149067646  299 ELDTIASKpAGDHVFQVDNFEALNTIRNQL 328
Cdd:COG1240   233 LLREIAEA-TGGRYFRADDLSELAAIYREI 261
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 150-288 4.13e-12

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 66.25  E-value: 4.13e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKSKTL--------FSLMQYSDEFRTHFTFNDFKRNPDP-KSHVRPIRQ 220
Cdd:cd01480     4 DITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRkdpagswrVGVVQYSDQQEVEAGFLRDIRNYTSlKEAVDNLEY 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 149067646  221 LNGRTKTASGIRKVVRELFQkinGARDNAAKILVVITDGEKFGDPLN-YEDVIPEAEEAGIIRYVIGVG 288
Cdd:cd01480    84 IGGGTFTDCALKYATEQLLE---GSHQKENKFLLVITDGHSDGSPDGgIEKAVNEADHLGIKIFFVAVG 149
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 516-569 3.09e-11

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 59.70  E-value: 3.09e-11
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 149067646    516 PWGRFGAALTVLGDVNGDKLTDVAIGAPGEQENQ--GAVYIFHGASVASISTPHSQ 569
Cdd:smart00191    1 PGSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGetGAVYVYFGSSGGGNSIPLQN 56
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 150-288 3.63e-11

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 63.17  E-value: 3.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSIN-SIDFQKMKEFVSTVMDQFQKSK--TLFSLMQYSDEFRTHFTFND-FKRNPDPK----SHVRPIRQL 221
Cdd:cd01471     2 DLYLLVDGSGSIGySNWVTHVVPFLHTFVQNLNISPdeINLYLVTFSTNAKELIRLSSpNSTNKDLAlnaiRALLSLYYP 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  222 NGRTKTASGIrKVVRELFQKINGARDNAAKILVVITDGEkfgdPLNYEDVIPEAE---EAGIIRYVIGVG 288
Cdd:cd01471    82 NGSTNTTSAL-LVVEKHLFDTRGNRENAPQLVIIMTDGI----PDSKFRTLKEARklrERGVIIAVLGVG 146
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 150-331 4.26e-11

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 63.30  E-value: 4.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  150 DIAFLIDGSGSINSiDFQKMKEFVSTVMDQFQKSKTLFSLMQYSDEFRTHFTFNDfkrnpDPKSHVRPIRQLN-----GR 224
Cdd:cd01474     6 DLYFVLDKSGSVAA-NWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD-----DSSAIIKGLEVLKkvtpsGQ 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  225 TKTASGIRKVVRELFQKINGARDnAAKILVVITDGEKFGDPLNY-EDVIPEAEEAGIIRYVIGVgnafhKPQSRRELDTI 303
Cdd:cd01474    80 TYIHEGLENANEQIFNRNGGGRE-TVSVIIALTDGQLLLNGHKYpEHEAKLSRKLGAIVYCVGV-----TDFLKSQLINI 153

                         170       180
                  ....*....|....*....|....*....
gi 149067646  304 ASKPagDHVFQVDN-FEALNTIRNQLQEK 331
Cdd:cd01474   154 ADSK--EYVFPVTSgFQALSGIIESVVKK 180
VWA_2 pfam13519
von Willebrand factor type A domain;
151-256 6.11e-10

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 57.30  E-value: 6.11e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646   151 IAFLIDGSGSINSID-----FQKMKEFVSTVMDQFQKSKtlFSLMQYSDEFRTHFTFNDfkrnpDPKSHVRPIRQL---N 222
Cdd:pfam13519    1 LVFVLDTSGSMRNGDygptrLEAAKDAVLALLKSLPGDR--VGLVTFGDGPEVLIPLTK-----DRAKILRALRRLepkG 73

                           90       100       110
                   ....*....|....*....|....*....|....
gi 149067646   223 GRTKTASGIRKVVRELFQKingaRDNAAKILVVI 256
Cdd:pfam13519   74 GGTNLAAALQLARAALKHR----RKNQPRRIVLI 103
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 520-555 5.00e-08

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 49.82  E-value: 5.00e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 149067646   520 FGAALTVlGDVNGDKLTDVAIGAPGE-QENQGAVYIF 555
Cdd:pfam01839    1 FGYSVAV-GDLNGDGYADLAVGAPGEgGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 453-509 5.79e-08

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 50.45  E-value: 5.79e-08
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*...
gi 149067646    453 IGSYFGASLCSV-DMDADGNTNLiLIGAPHHYEKTRGGQVSVCPLPRGRARWQCEAIL 509
Cdd:smart00191    1 PGSYFGYSVAGVgDVNGDGYPDL-LVGAPRANDAGETGAVYVYFGSSGGGNSIPLQNL 57
YfbK COG2304
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ...
 149-342 3.14e-06

Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];


Pssm-ID: 441879 [Multi-domain]  Cd Length: 289  Bit Score: 50.49  E-value: 3.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  149 SDIAFLIDGSGSINSIDFQKMKEFVSTVMDQFqKSKTLFSLMQYSDEFRTHFtfnDFKRNPDPKSHVRPIRQL--NGRTK 226
Cdd:COG2304    92 LNLVFVIDVSGSMSGDKLELAKEAAKLLVDQL-RPGDRVSIVTFAGDARVLL---PPTPATDRAKILAAIDRLqaGGGTA 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  227 TASGIRKVVRELFQkinGARDNAAKILVVITDGE---KFGDPLNYEDVIPEAEEAGIIRYVIGVGNAFHkpqsRRELDTI 303
Cdd:COG2304   168 LGAGLELAYELARK---HFIPGRVNRVILLTDGDanvGITDPEELLKLAEEAREEGITLTTLGVGSDYN----EDLLERL 240

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 149067646  304 ASKPAGDHVFqVDNFEALntirnqlqEKIFAIEGTQTGS 342
Cdd:COG2304   241 ADAGGGNYYY-IDDPEEA--------EKVFVREFSRIGY 270
ViaA COG2425
Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain ...
 138-290 7.94e-06

Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain [Function unknown];


Pssm-ID: 441973 [Multi-domain]  Cd Length: 263  Bit Score: 48.91  E-value: 7.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  138 PEALRGCPQQESDIAFLIDGSGSINSIDFQKMKEFVSTVMDQFQKSKTlFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRP 217
Cdd:COG2425   108 APASAAVPLLEGPVVLCVDTSGSMAGSKEAAAKAAALALLRALRPNRR-FGVILFDTEVVEDLPLTADDGLEDAIEFLSG 186

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 149067646  218 IrQLNGRTKTASGIRKVVRELfqkinGARDNAAKILVVITDGEkfgDPLNYEDVIPE--AEEAGIIRYVIGVGNA 290
Cdd:COG2425   187 L-FAGGGTDIAPALRAALELL-----EEPDYRNADIVLITDGE---AGVSPEELLREvrAKESGVRLFTVAIGDA 252
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 581-605 7.54e-04

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 38.51  E-value: 7.54e-04
                            10        20
                    ....*....|....*....|....*
gi 149067646    581 QYFGQSLSGGKDLTMDGLMDLAVGA 605
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGA 27
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1128-1140 1.05e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


Pssm-ID: 459778  Cd Length: 15  Bit Score: 37.48  E-value: 1.05e-03
                           10
                   ....*....|...
gi 149067646  1128 KLGFFKRQYKDMM 1140
Cdd:pfam00357    1 KCGFFKRNYPPQE 13
TerY COG4245
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
142-289 1.36e-03

Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];


Pssm-ID: 443387 [Multi-domain]  Cd Length: 196  Bit Score: 41.06  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  142 RGCPqqesdIAFLIDGSGSINSIDFQKMKE----FVSTVMDQFQKSKTL-FSLMQYSDEFRTHFTF---NDFKrnpdpks 213
Cdd:COG4245     4 RRLP-----VYLLLDTSGSMSGEPIEALNEglqaLIDELRQDPYALETVeVSVITFDGEAKVLLPLtdlEDFQ------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067646  214 hvrpIRQL--NGRTKTASGIRKVVREL-----FQKINGARDNaAKILVVITDGEkfgdP--LNYEDVIPEAEEA----GI 280
Cdd:COG4245    72 ----PPDLsaSGGTPLGAALELLLDLIerrvqKYTAEGKGDW-RPVVFLITDGE----PtdSDWEAALQRLKDGeaakKA 142


                  ....*....
gi 149067646  281 IRYVIGVGN 289
Cdd:COG4245   143 NIFAIGVGP 151
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
 251-319 2.66e-03

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 40.01  E-value: 2.66e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149067646  251 KILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAFHKP-------QSRRELDTIASKPAGDHVFQVDNFE 319
Cdd:cd01467   104 RVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPkpdgstiLDEDSLVEIADKTGGRIFRALDGFE 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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