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Conserved domains on  [gi|149068068|gb|EDM17620|]
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ubiquinol cytochrome c reductase core protein 2, isoform CRA_e [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Peptidase_M16 super family cl38004
Insulinase (Peptidase family M16);
47-109 9.74e-16

Insulinase (Peptidase family M16);


The actual alignment was detected with superfamily member pfam00675:

Pssm-ID: 425812 [Multi-domain]  Cd Length: 149  Bit Score: 68.10  E-value: 9.74e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149068068   47 VIASLEN-YAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKL 109
Cdd:pfam00675   1 RVASESDpPADTSTVGLWIDAGSRYEPDNNNGLAHFLEHMAFKGTKKYPSNELEEELEKLGGSL 64
 
Name Accession Description Interval E-value
Peptidase_M16 pfam00675
Insulinase (Peptidase family M16);
47-109 9.74e-16

Insulinase (Peptidase family M16);


Pssm-ID: 425812 [Multi-domain]  Cd Length: 149  Bit Score: 68.10  E-value: 9.74e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149068068   47 VIASLEN-YAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKL 109
Cdd:pfam00675   1 RVASESDpPADTSTVGLWIDAGSRYEPDNNNGLAHFLEHMAFKGTKKYPSNELEEELEKLGGSL 64
PqqL COG0612
Predicted Zn-dependent peptidase, M16 family [General function prediction only];
24-109 4.80e-09

Predicted Zn-dependent peptidase, M16 family [General function prediction only];


Pssm-ID: 440377 [Multi-domain]  Cd Length: 427  Bit Score: 52.23  E-value: 4.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149068068  24 TSAPGGVPLQPQELEFTKLPNGLVIASLEN-YAPLSRIGLFIKAGSRYENYNYLGTSHLlrLASTLT--TKGASSFKITR 100
Cdd:COG0612    2 APAAGAAPAAAPDVEEFTLPNGLRVILVPDpEAPVVSVRLWVRVGSRDEPPGKTGLAHF--LEHMLFkgTKKRSAGEIAE 79


                 ....*....
gi 149068068 101 GIEAVGGKL 109
Cdd:COG0612   80 ELEALGGSL 88
 
Name Accession Description Interval E-value
Peptidase_M16 pfam00675
Insulinase (Peptidase family M16);
47-109 9.74e-16

Insulinase (Peptidase family M16);


Pssm-ID: 425812 [Multi-domain]  Cd Length: 149  Bit Score: 68.10  E-value: 9.74e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149068068   47 VIASLEN-YAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKL 109
Cdd:pfam00675   1 RVASESDpPADTSTVGLWIDAGSRYEPDNNNGLAHFLEHMAFKGTKKYPSNELEEELEKLGGSL 64
PqqL COG0612
Predicted Zn-dependent peptidase, M16 family [General function prediction only];
24-109 4.80e-09

Predicted Zn-dependent peptidase, M16 family [General function prediction only];


Pssm-ID: 440377 [Multi-domain]  Cd Length: 427  Bit Score: 52.23  E-value: 4.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149068068  24 TSAPGGVPLQPQELEFTKLPNGLVIASLEN-YAPLSRIGLFIKAGSRYENYNYLGTSHLlrLASTLT--TKGASSFKITR 100
Cdd:COG0612    2 APAAGAAPAAAPDVEEFTLPNGLRVILVPDpEAPVVSVRLWVRVGSRDEPPGKTGLAHF--LEHMLFkgTKKRSAGEIAE 79


                 ....*....
gi 149068068 101 GIEAVGGKL 109
Cdd:COG0612   80 ELEALGGSL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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