|
Name |
Accession |
Description |
Interval |
E-value |
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1272-1414 |
1.28e-32 |
|
Clathrin heavy chain repeat homology;
:
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.92 E-value: 1.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1272 LNIIVHADELGELISYYLVRGHFEPLIALLEAGLGLERAHMGLFTELAILYGRYQPEKMKEYLEMYWSRVNIPKVLRAAE 1351
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 163778989 1352 EAHLWPELVFLYDKYDEYDNAVITMMEHPSEAwhdKRFLEMIVKVANTELFYKAVDFYLSHKP 1414
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIEHLGNY---EKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1126-1265 |
3.17e-31 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 120.05 E-value: 3.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1126 YIKANDPSAVQGVVMAAKTHDKFEDLIRYLQMARKKSR--DAAIETELVFAYAKTNRLADMEEFITSQHIANVQEVGDRC 1203
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSreNPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 163778989 1204 YDEQLWEAAKILYSNASNFARLSSTLVHLKEYQAAVDAARKANSTRSWKEVCFACVDHQEFK 1265
Cdd:pfam00637 81 EKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
684-822 |
7.50e-30 |
|
Clathrin heavy chain repeat homology;
:
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 116.22 E-value: 7.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 684 ASKYHEQIGAAALIDLFESFKSAEGLFYFLGAVVNS-SEDPEVHFKYIEAACKTGQTKEVERICRTSNHYDPERVKNYLK 762
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLnSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 163778989 763 EAKLSDQLPLIIVCDrFDFVQDLVMYLYK-NDQRKFIEVYVTKVNPKRLPAVVGGLMDVDC 822
Cdd:smart00299 81 KAKLYEEAVELYKKD-GNFKDAIVTLIEHlGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
843-966 |
3.74e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 111.19 E-value: 3.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 843 LVAEVEKRNRLKMLLPWLEGRVQEGVTE-PATHNALAKIYIDSN--TNAERFLKENQYYDSAVVGKYCEKRDP-QMAFVV 918
Cdd:pfam00637 13 VVKLFEKAGLLEELISYLESALKEDSREnPALQTALIELYAKYDdpEELEEFLKKNNNYDLEKVAKLCEKADLyEEAVIL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 163778989 919 YERGNCDDQLIEICNANALHKNLARYLVRRKDSDLWARVLDESNDQRR 966
Cdd:pfam00637 93 YKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1421-1562 |
3.94e-27 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 108.50 E-value: 3.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1421 LTAVVGRIDHTRAVKLLKDRDVVAMAKPYLKTVQQN---DNVVVNEALNDVLIHEGDYEGLRTSIDGYKNFDNIALAQRL 1497
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 163778989 1498 EKHELLEFRRisaYLYKGNNRWKQSVDICKKDRLYKDAMQYAAESRDPEAAKALLDYFVEIDDKE 1562
Cdd:pfam00637 81 EKADLYEEAV---ILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
977-1114 |
3.80e-23 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 96.94 E-value: 3.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 977 LLEAQDPDEISVAVKAFIAADIPSELIELLEKLVMGESMfsKNSNLQNLLIVTAIK-ADGARVSEYINRLDDYDASTIAQ 1055
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKyDDPEELEEFLKKNNNYDLEKVAK 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 163778989 1056 VAIEHSQFEDAFAVFKKFEVHTEAVKvLINDIKNLDRAYEYAERVNNADVWSLLAGAQL 1114
Cdd:pfam00637 79 LCEKADLYEEAVILYKKIGNWKEAIS-LLKKLGDYKDAIEYAVKSSNPELWEELLEALL 136
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
534-676 |
4.09e-20 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 88.08 E-value: 4.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 534 LVKEDPPLaNINSIVDAFDEMKLVQPCTAFLLEVLKPNLPEQGDLQTRLLEMNL-MQAPQVADAILGqgMLTHFDKQRVA 612
Cdd:pfam00637 1 LIESTDPI-DVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAkYDDPEELEEFLK--KNNNYDLEKVA 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 613 QLCEQCGLTQRALENYTDLYDIKRAI---IHTQMLDRNWlvQYFSTLSVDDSIECLREMLSKNIRQN 676
Cdd:pfam00637 78 KLCEKADLYEEAVILYKKIGNWKEAIsllKKLGDYKDAI--EYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin_H_link super family |
cl16430 |
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
354-419 |
3.99e-10 |
|
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268.
The actual alignment was detected with superfamily member pfam13838:
Pssm-ID: 463995 Cd Length: 66 Bit Score: 57.22 E-value: 3.99e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163778989 354 DLPGAEDTFVQQFNHLYGQGQFAAAAKVAAEAPRGILRNQDTIQKLQQAPQQPGQQPPILQYFSTL 419
Cdd:pfam13838 1 GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPILQYFGTL 66
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
146-185 |
5.07e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
:
Pssm-ID: 460192 Cd Length: 37 Bit Score: 38.94 E-value: 5.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 163778989 146 LNGTQIINYRTDAAKQWLILIGISardNRVVGSMQLYSVE 185
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAIN---GTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
196-232 |
4.93e-03 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
:
Pssm-ID: 460192 Cd Length: 37 Bit Score: 36.24 E-value: 4.93e-03
10 20 30
....*....|....*....|....*....|....*..
gi 163778989 196 AACFTQFKMPGNPHPSNVLCMANRGAAGAKIHVIEVG 232
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
18-54 |
7.75e-03 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
:
Pssm-ID: 460192 Cd Length: 37 Bit Score: 35.47 E-value: 7.75e-03
10 20 30
....*....|....*....|....*....|....*...
gi 163778989 18 GIDAASISFNTLTMESEKYICVRE-AKAGKteLVIVDV 54
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINgTKKGQ--VQIVDV 36
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1272-1414 |
1.28e-32 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.92 E-value: 1.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1272 LNIIVHADELGELISYYLVRGHFEPLIALLEAGLGLERAHMGLFTELAILYGRYQPEKMKEYLEMYWSRVNIPKVLRAAE 1351
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 163778989 1352 EAHLWPELVFLYDKYDEYDNAVITMMEHPSEAwhdKRFLEMIVKVANTELFYKAVDFYLSHKP 1414
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIEHLGNY---EKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1126-1265 |
3.17e-31 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 120.05 E-value: 3.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1126 YIKANDPSAVQGVVMAAKTHDKFEDLIRYLQMARKKSR--DAAIETELVFAYAKTNRLADMEEFITSQHIANVQEVGDRC 1203
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSreNPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 163778989 1204 YDEQLWEAAKILYSNASNFARLSSTLVHLKEYQAAVDAARKANSTRSWKEVCFACVDHQEFK 1265
Cdd:pfam00637 81 EKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
684-822 |
7.50e-30 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 116.22 E-value: 7.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 684 ASKYHEQIGAAALIDLFESFKSAEGLFYFLGAVVNS-SEDPEVHFKYIEAACKTGQTKEVERICRTSNHYDPERVKNYLK 762
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLnSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 163778989 763 EAKLSDQLPLIIVCDrFDFVQDLVMYLYK-NDQRKFIEVYVTKVNPKRLPAVVGGLMDVDC 822
Cdd:smart00299 81 KAKLYEEAVELYKKD-GNFKDAIVTLIEHlGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
843-966 |
3.74e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 111.19 E-value: 3.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 843 LVAEVEKRNRLKMLLPWLEGRVQEGVTE-PATHNALAKIYIDSN--TNAERFLKENQYYDSAVVGKYCEKRDP-QMAFVV 918
Cdd:pfam00637 13 VVKLFEKAGLLEELISYLESALKEDSREnPALQTALIELYAKYDdpEELEEFLKKNNNYDLEKVAKLCEKADLyEEAVIL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 163778989 919 YERGNCDDQLIEICNANALHKNLARYLVRRKDSDLWARVLDESNDQRR 966
Cdd:pfam00637 93 YKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1421-1562 |
3.94e-27 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 108.50 E-value: 3.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1421 LTAVVGRIDHTRAVKLLKDRDVVAMAKPYLKTVQQN---DNVVVNEALNDVLIHEGDYEGLRTSIDGYKNFDNIALAQRL 1497
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 163778989 1498 EKHELLEFRRisaYLYKGNNRWKQSVDICKKDRLYKDAMQYAAESRDPEAAKALLDYFVEIDDKE 1562
Cdd:pfam00637 81 EKADLYEEAV---ILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1126-1263 |
2.55e-26 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 105.82 E-value: 2.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1126 YIKANDPSAVQGVVMAAKTHDKFEDLIRYLQMARKKSR-DAAIETELVFAYAKTNRLADMEEFITSQHIANVQEVGDRCY 1204
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSeNPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1205 DEQLWEAAKILYSNASNFARLSSTLV-HLKEYQAAVDAARKANSTRSWKEVCFACVDHQE 1263
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIeHLGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1272-1416 |
8.17e-26 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.65 E-value: 8.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1272 LNIIVHADELGELISYYLVRGHFEPLIALLEAGLGL-ERAHMGLFTELAILYGRY-QPEKMKEYLEMYWSrVNIPKVLRA 1349
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdSRENPALQTALIELYAKYdDPEELEEFLKKNNN-YDLEKVAKL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 1350 AEEAHLWPELVFLYDKYDEYDNAVitMMEHPSEAWhdKRFLEMIVKVANTELFYKAVDFYLSHKPLL 1416
Cdd:pfam00637 80 CEKADLYEEAVILYKKIGNWKEAI--SLLKKLGDY--KDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
831-966 |
8.97e-26 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 104.28 E-value: 8.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 831 IMVVRGEFSTDDLVAEVEKRNRLKMLLPWLEGRVQEGVTEPATHNALAKIYIDSNTNA--ERFLKENQYYDSAVVGKYCE 908
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKeiERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 909 KRDP-QMAFVVYERGNCDDQLIEICNANA-LHKNLARYLVRRKDSDLWARVLDESNDQRR 966
Cdd:smart00299 81 KAKLyEEAVELYKKDGNFKDAIVTLIEHLgNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
686-824 |
1.19e-25 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.26 E-value: 1.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 686 KYHEQIGAAALIDLFESFKSAEGLFYFLGAVV--NSSEDPEVHFKYIEAACKTGQTKEVERICRTSNHYDPERVKNYLKE 763
Cdd:pfam00637 3 ESTDPIDVSRVVKLFEKAGLLEELISYLESALkeDSRENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 163778989 764 AKLSDQLPLIIVCdrFDFVQDLV-MYLYKNDQRKFIEVYVTKVNPKRLPAVVGGLMDVDCSE 824
Cdd:pfam00637 83 ADLYEEAVILYKK--IGNWKEAIsLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
977-1114 |
3.80e-23 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 96.94 E-value: 3.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 977 LLEAQDPDEISVAVKAFIAADIPSELIELLEKLVMGESMfsKNSNLQNLLIVTAIK-ADGARVSEYINRLDDYDASTIAQ 1055
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKyDDPEELEEFLKKNNNYDLEKVAK 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 163778989 1056 VAIEHSQFEDAFAVFKKFEVHTEAVKvLINDIKNLDRAYEYAERVNNADVWSLLAGAQL 1114
Cdd:pfam00637 79 LCEKADLYEEAVILYKKIGNWKEAIS-LLKKLGDYKDAIEYAVKSSNPELWEELLEALL 136
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
977-1114 |
5.60e-22 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 93.49 E-value: 5.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 977 LLEAQDPDEISVAVKAFIAADIPSELIELLEKLVMGESmfsKNSNLQNLLIVTAIKADGARVSEYI-NRLDDYDASTIAQ 1055
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDPQKEIERLdNKSNHYDIEKVGK 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 163778989 1056 VAIEHSQFEDAFAVFKKFEVHTEAVKVLINDIKNLDRAYEYAERVNNADVWSLLAGAQL 1114
Cdd:smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
534-676 |
4.09e-20 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 88.08 E-value: 4.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 534 LVKEDPPLaNINSIVDAFDEMKLVQPCTAFLLEVLKPNLPEQGDLQTRLLEMNL-MQAPQVADAILGqgMLTHFDKQRVA 612
Cdd:pfam00637 1 LIESTDPI-DVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAkYDDPEELEEFLK--KNNNYDLEKVA 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 613 QLCEQCGLTQRALENYTDLYDIKRAI---IHTQMLDRNWlvQYFSTLSVDDSIECLREMLSKNIRQN 676
Cdd:pfam00637 78 KLCEKADLYEEAVILYKKIGNWKEAIsllKKLGDYKDAI--EYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
540-672 |
6.04e-19 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 85.02 E-value: 6.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 540 PLANINSIVDAFDEMKLVQPCTAFLLEVLKPNlPEQGDLQTRLLEMNLMQAPQVADAILGqGMLTHFDKQRVAQLCEQCG 619
Cdd:smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLD-NKSNHYDIEKVGKLCEKAK 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 163778989 620 LTQRALENYTDLYDIKRAIIHTQMLDRN--WLVQYFST-LSVDDSIECLREMLSKN 672
Cdd:smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEHLGNyeKAIEYFVKqNNPELWAEVLKALLDKP 139
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1421-1576 |
5.70e-18 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 81.94 E-value: 5.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1421 LTAVVGRIDHTRAVKLLKDRDVVAMAKPYLKTVQQNDNVvvNEALNDVLIHEGDYEGLRTSIDGYKNFdnialaqrlekH 1500
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYDPQKEIERLDNK-----------S 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 1501 ELLEFRRISAYLYKGNNrWKQSVDICKKDRLYKDAMQ-YAAESRDPEAAKallDYFVEIDDKECFAACCFACYDLLR 1576
Cdd:smart00299 68 NHYDIEKVGKLCEKAKL-YEEAVELYKKDGNFKDAIVtLIEHLGNYEKAI---EYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin_H_link |
pfam13838 |
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
354-419 |
3.99e-10 |
|
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268.
Pssm-ID: 463995 Cd Length: 66 Bit Score: 57.22 E-value: 3.99e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163778989 354 DLPGAEDTFVQQFNHLYGQGQFAAAAKVAAEAPRGILRNQDTIQKLQQAPQQPGQQPPILQYFSTL 419
Cdd:pfam13838 1 GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPILQYFGTL 66
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
976-1245 |
4.55e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.95 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 976 ALLEAQDPDEisvAVKAFI-AADIPSELIELLEKLVmgeSMFSKNSNLQNLLIV--TAIKADGARVSEYINrlddydast 1052
Cdd:COG2956 17 NYLLNGQPDK---AIDLLEeALELDPETVEAHLALG---NLYRRRGEYDRAIRIhqKLLERDPDRAEALLE--------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1053 IAQVAIEHSQFEDAFAVFKKF----EVHTEAVKVLIN---DIKNLDRAYEYAERV-----NNADVWSLLAGAQLRDGMIK 1120
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLleldPDDAEALRLLAEiyeQEGDWEKAIEVLERLlklgpENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1121 EAIDSYIKA--NDPSAVQGVVMAAKTH---DKFEDLIRYLQ-MARKKSRDAAIETELVFAYAKTNRLADMEEFItsqhia 1194
Cdd:COG2956 162 EAIEALEKAlkLDPDCARALLLLAELYleqGDYEEAIAALErALEQDPDYLPALPRLAELYEKLGDPEEALELL------ 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 163778989 1195 nvqevgdrcydeqlwEAAKILYSNASNFARLSSTLVHLKEYQAAVDAARKA 1245
Cdd:COG2956 236 ---------------RKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
146-185 |
5.07e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 38.94 E-value: 5.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 163778989 146 LNGTQIINYRTDAAKQWLILIGISardNRVVGSMQLYSVE 185
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAIN---GTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
196-232 |
4.93e-03 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 36.24 E-value: 4.93e-03
10 20 30
....*....|....*....|....*....|....*..
gi 163778989 196 AACFTQFKMPGNPHPSNVLCMANRGAAGAKIHVIEVG 232
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
18-54 |
7.75e-03 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 35.47 E-value: 7.75e-03
10 20 30
....*....|....*....|....*....|....*...
gi 163778989 18 GIDAASISFNTLTMESEKYICVRE-AKAGKteLVIVDV 54
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINgTKKGQ--VQIVDV 36
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1272-1414 |
1.28e-32 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.92 E-value: 1.28e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1272 LNIIVHADELGELISYYLVRGHFEPLIALLEAGLGLERAHMGLFTELAILYGRYQPEKMKEYLEMYWSRVNIPKVLRAAE 1351
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 163778989 1352 EAHLWPELVFLYDKYDEYDNAVITMMEHPSEAwhdKRFLEMIVKVANTELFYKAVDFYLSHKP 1414
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIEHLGNY---EKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1126-1265 |
3.17e-31 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 120.05 E-value: 3.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1126 YIKANDPSAVQGVVMAAKTHDKFEDLIRYLQMARKKSR--DAAIETELVFAYAKTNRLADMEEFITSQHIANVQEVGDRC 1203
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSreNPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 163778989 1204 YDEQLWEAAKILYSNASNFARLSSTLVHLKEYQAAVDAARKANSTRSWKEVCFACVDHQEFK 1265
Cdd:pfam00637 81 EKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
684-822 |
7.50e-30 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 116.22 E-value: 7.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 684 ASKYHEQIGAAALIDLFESFKSAEGLFYFLGAVVNS-SEDPEVHFKYIEAACKTGQTKEVERICRTSNHYDPERVKNYLK 762
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLnSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 163778989 763 EAKLSDQLPLIIVCDrFDFVQDLVMYLYK-NDQRKFIEVYVTKVNPKRLPAVVGGLMDVDC 822
Cdd:smart00299 81 KAKLYEEAVELYKKD-GNFKDAIVTLIEHlGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
843-966 |
3.74e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 111.19 E-value: 3.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 843 LVAEVEKRNRLKMLLPWLEGRVQEGVTE-PATHNALAKIYIDSN--TNAERFLKENQYYDSAVVGKYCEKRDP-QMAFVV 918
Cdd:pfam00637 13 VVKLFEKAGLLEELISYLESALKEDSREnPALQTALIELYAKYDdpEELEEFLKKNNNYDLEKVAKLCEKADLyEEAVIL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 163778989 919 YERGNCDDQLIEICNANALHKNLARYLVRRKDSDLWARVLDESNDQRR 966
Cdd:pfam00637 93 YKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1421-1562 |
3.94e-27 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 108.50 E-value: 3.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1421 LTAVVGRIDHTRAVKLLKDRDVVAMAKPYLKTVQQN---DNVVVNEALNDVLIHEGDYEGLRTSIDGYKNFDNIALAQRL 1497
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 163778989 1498 EKHELLEFRRisaYLYKGNNRWKQSVDICKKDRLYKDAMQYAAESRDPEAAKALLDYFVEIDDKE 1562
Cdd:pfam00637 81 EKADLYEEAV---ILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1126-1263 |
2.55e-26 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 105.82 E-value: 2.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1126 YIKANDPSAVQGVVMAAKTHDKFEDLIRYLQMARKKSR-DAAIETELVFAYAKTNRLADMEEFITSQHIANVQEVGDRCY 1204
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSeNPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1205 DEQLWEAAKILYSNASNFARLSSTLV-HLKEYQAAVDAARKANSTRSWKEVCFACVDHQE 1263
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIeHLGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1272-1416 |
8.17e-26 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.65 E-value: 8.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1272 LNIIVHADELGELISYYLVRGHFEPLIALLEAGLGL-ERAHMGLFTELAILYGRY-QPEKMKEYLEMYWSrVNIPKVLRA 1349
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdSRENPALQTALIELYAKYdDPEELEEFLKKNNN-YDLEKVAKL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 1350 AEEAHLWPELVFLYDKYDEYDNAVitMMEHPSEAWhdKRFLEMIVKVANTELFYKAVDFYLSHKPLL 1416
Cdd:pfam00637 80 CEKADLYEEAVILYKKIGNWKEAI--SLLKKLGDY--KDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
831-966 |
8.97e-26 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 104.28 E-value: 8.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 831 IMVVRGEFSTDDLVAEVEKRNRLKMLLPWLEGRVQEGVTEPATHNALAKIYIDSNTNA--ERFLKENQYYDSAVVGKYCE 908
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKeiERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 909 KRDP-QMAFVVYERGNCDDQLIEICNANA-LHKNLARYLVRRKDSDLWARVLDESNDQRR 966
Cdd:smart00299 81 KAKLyEEAVELYKKDGNFKDAIVTLIEHLgNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
686-824 |
1.19e-25 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.26 E-value: 1.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 686 KYHEQIGAAALIDLFESFKSAEGLFYFLGAVV--NSSEDPEVHFKYIEAACKTGQTKEVERICRTSNHYDPERVKNYLKE 763
Cdd:pfam00637 3 ESTDPIDVSRVVKLFEKAGLLEELISYLESALkeDSRENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 163778989 764 AKLSDQLPLIIVCdrFDFVQDLV-MYLYKNDQRKFIEVYVTKVNPKRLPAVVGGLMDVDCSE 824
Cdd:pfam00637 83 ADLYEEAVILYKK--IGNWKEAIsLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
977-1114 |
3.80e-23 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 96.94 E-value: 3.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 977 LLEAQDPDEISVAVKAFIAADIPSELIELLEKLVMGESMfsKNSNLQNLLIVTAIK-ADGARVSEYINRLDDYDASTIAQ 1055
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKyDDPEELEEFLKKNNNYDLEKVAK 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 163778989 1056 VAIEHSQFEDAFAVFKKFEVHTEAVKvLINDIKNLDRAYEYAERVNNADVWSLLAGAQL 1114
Cdd:pfam00637 79 LCEKADLYEEAVILYKKIGNWKEAIS-LLKKLGDYKDAIEYAVKSSNPELWEELLEALL 136
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
977-1114 |
5.60e-22 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 93.49 E-value: 5.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 977 LLEAQDPDEISVAVKAFIAADIPSELIELLEKLVMGESmfsKNSNLQNLLIVTAIKADGARVSEYI-NRLDDYDASTIAQ 1055
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDPQKEIERLdNKSNHYDIEKVGK 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 163778989 1056 VAIEHSQFEDAFAVFKKFEVHTEAVKVLINDIKNLDRAYEYAERVNNADVWSLLAGAQL 1114
Cdd:smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
534-676 |
4.09e-20 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 88.08 E-value: 4.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 534 LVKEDPPLaNINSIVDAFDEMKLVQPCTAFLLEVLKPNLPEQGDLQTRLLEMNL-MQAPQVADAILGqgMLTHFDKQRVA 612
Cdd:pfam00637 1 LIESTDPI-DVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAkYDDPEELEEFLK--KNNNYDLEKVA 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 613 QLCEQCGLTQRALENYTDLYDIKRAI---IHTQMLDRNWlvQYFSTLSVDDSIECLREMLSKNIRQN 676
Cdd:pfam00637 78 KLCEKADLYEEAVILYKKIGNWKEAIsllKKLGDYKDAI--EYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
540-672 |
6.04e-19 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 85.02 E-value: 6.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 540 PLANINSIVDAFDEMKLVQPCTAFLLEVLKPNlPEQGDLQTRLLEMNLMQAPQVADAILGqGMLTHFDKQRVAQLCEQCG 619
Cdd:smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLD-NKSNHYDIEKVGKLCEKAK 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 163778989 620 LTQRALENYTDLYDIKRAIIHTQMLDRN--WLVQYFST-LSVDDSIECLREMLSKN 672
Cdd:smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEHLGNyeKAIEYFVKqNNPELWAEVLKALLDKP 139
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1421-1576 |
5.70e-18 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 81.94 E-value: 5.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1421 LTAVVGRIDHTRAVKLLKDRDVVAMAKPYLKTVQQNDNVvvNEALNDVLIHEGDYEGLRTSIDGYKNFdnialaqrlekH 1500
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYDPQKEIERLDNK-----------S 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 163778989 1501 ELLEFRRISAYLYKGNNrWKQSVDICKKDRLYKDAMQ-YAAESRDPEAAKallDYFVEIDDKECFAACCFACYDLLR 1576
Cdd:smart00299 68 NHYDIEKVGKLCEKAKL-YEEAVELYKKDGNFKDAIVtLIEHLGNYEKAI---EYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin_H_link |
pfam13838 |
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
354-419 |
3.99e-10 |
|
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268.
Pssm-ID: 463995 Cd Length: 66 Bit Score: 57.22 E-value: 3.99e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 163778989 354 DLPGAEDTFVQQFNHLYGQGQFAAAAKVAAEAPRGILRNQDTIQKLQQAPQQPGQQPPILQYFSTL 419
Cdd:pfam13838 1 GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPILQYFGTL 66
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
976-1245 |
4.55e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.95 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 976 ALLEAQDPDEisvAVKAFI-AADIPSELIELLEKLVmgeSMFSKNSNLQNLLIV--TAIKADGARVSEYINrlddydast 1052
Cdd:COG2956 17 NYLLNGQPDK---AIDLLEeALELDPETVEAHLALG---NLYRRRGEYDRAIRIhqKLLERDPDRAEALLE--------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1053 IAQVAIEHSQFEDAFAVFKKF----EVHTEAVKVLIN---DIKNLDRAYEYAERV-----NNADVWSLLAGAQLRDGMIK 1120
Cdd:COG2956 82 LAQDYLKAGLLDRAEELLEKLleldPDDAEALRLLAEiyeQEGDWEKAIEVLERLlklgpENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 163778989 1121 EAIDSYIKA--NDPSAVQGVVMAAKTH---DKFEDLIRYLQ-MARKKSRDAAIETELVFAYAKTNRLADMEEFItsqhia 1194
Cdd:COG2956 162 EAIEALEKAlkLDPDCARALLLLAELYleqGDYEEAIAALErALEQDPDYLPALPRLAELYEKLGDPEEALELL------ 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 163778989 1195 nvqevgdrcydeqlwEAAKILYSNASNFARLSSTLVHLKEYQAAVDAARKA 1245
Cdd:COG2956 236 ---------------RKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
146-185 |
5.07e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 38.94 E-value: 5.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 163778989 146 LNGTQIINYRTDAAKQWLILIGISardNRVVGSMQLYSVE 185
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAIN---GTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
196-232 |
4.93e-03 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 36.24 E-value: 4.93e-03
10 20 30
....*....|....*....|....*....|....*..
gi 163778989 196 AACFTQFKMPGNPHPSNVLCMANRGAAGAKIHVIEVG 232
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
18-54 |
7.75e-03 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 35.47 E-value: 7.75e-03
10 20 30
....*....|....*....|....*....|....*...
gi 163778989 18 GIDAASISFNTLTMESEKYICVRE-AKAGKteLVIVDV 54
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINgTKKGQ--VQIVDV 36
|
|
| |
