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Conserved domains on  [gi|197721166|gb|EDY65074|]
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sugar transport system permease [Streptomyces pristinaespiralis ATCC 25486]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
25-293 7.88e-84

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 255.06  E-value: 7.88e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  25 ASAHGTPQRRGRTLRRITPWMFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSPDRNFTGVDNYSQIFTRPELFRVFFVS 104
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 105 FYYLAAS-AVQIVVALYFATVLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQ-DGGTLDSVLSWFGADTdRAWLGD 182
Cdd:COG1175   82 LLFTVVSvPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALLGALGLEP-INWLGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 183 PTSANTSLAGVSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIP 262
Cdd:COG1175  161 PSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLV 240

                        250       260       270
                 ....*....|....*....|....*....|...
gi 197721166 263 YIMTGGATG--TSTFVIQTVKLAFQFNKTGLAS 293
Cdd:COG1175  241 YVLTGGGPGnsTTTLVLYIYQTAFQQFDFGYAS 273
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
25-293 7.88e-84

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 255.06  E-value: 7.88e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  25 ASAHGTPQRRGRTLRRITPWMFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSPDRNFTGVDNYSQIFTRPELFRVFFVS 104
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 105 FYYLAAS-AVQIVVALYFATVLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQ-DGGTLDSVLSWFGADTdRAWLGD 182
Cdd:COG1175   82 LLFTVVSvPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALLGALGLEP-INWLGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 183 PTSANTSLAGVSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIP 262
Cdd:COG1175  161 PSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLV 240

                        250       260       270
                 ....*....|....*....|....*....|...
gi 197721166 263 YIMTGGATG--TSTFVIQTVKLAFQFNKTGLAS 293
Cdd:COG1175  241 YVLTGGGPGnsTTTLVLYIYQTAFQQFDFGYAS 273
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
45-243 1.47e-16

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 78.33  E-value: 1.47e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  45 MFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSPDRNFTGVDNYSQIFTRPELFRVFFVSFYYLAASAVQ-IVVALYFAT 123
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSgLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 124 VLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDG-GTLDSVLSWFGADTDRAWLGDPTSANTSLAgvSVWRFTGLN 202
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGrGLITHFLAEFGYDWNHAQNSGQAMFLVVFA--SVWKQISYN 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 197721166 203 FVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPV 243
Cdd:PRK10561 159 FLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPV 199
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 108-272 1.79e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.30  E-value: 1.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 108 LAASAVQIVVALYFATVL-SFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTldsvlswfgadtdraWLGDPTSA 186
Cdd:cd06261    9 LIATLLALVLGLLLGIILaRKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG---------------WGILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 187 NTSLAGVSVWrFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMT 266
Cdd:cd06261   74 LPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152


                 ....*.
gi 197721166 267 GGATGT 272
Cdd:cd06261  153 GGEAPG 158
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 44-268 2.56e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.23  E-value: 2.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166   44 WMFLAVPLALLITFTYVPVGNMIYYSFTDWDGvspdrNFTGVDNYSQIFTRPELFRVFFVSFYyLAASAVQIVVALYFAT 123
Cdd:TIGR03262   4 RLLLAGMILALLLFLLLPLLALLTKSVYDSDG-----DFIGLANFAEYFATPGLLQSLGNSLT-VSAIVTAIVVPLAFAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  124 VLSFD---LRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSvlsWFGADTDRAWLGdptsantSLAGVSVWRFTG 200
Cdd:TIGR03262  78 AYALTrsrIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKG---LLGGFSIYGFWG-------IVIGEVFYTFPH 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197721166  201 LnFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGG 268
Cdd:TIGR03262 148 A-LMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 114-277 2.39e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.77  E-value: 2.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  114 QIVVALYFATVLSFdlRFRNLFKGILFFPYLINGVAIGFVFLYFFqdggtldsvlswfgadtdraWLGDPTSANTSLAGV 193
Cdd:pfam00528   1 GIPLGIIAALRRGR--RLDRLLRPLIDLLQALPSFVLAILLVVIA--------------------ILSILGHGILPAIIL 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  194 SVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGGATGTS 273
Cdd:pfam00528  59 ALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL 138


                  ....
gi 197721166  274 TFVI 277
Cdd:pfam00528 139 LLIE 142
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
25-293 7.88e-84

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 255.06  E-value: 7.88e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  25 ASAHGTPQRRGRTLRRITPWMFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSPDRNFTGVDNYSQIFTRPELFRVFFVS 104
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 105 FYYLAAS-AVQIVVALYFATVLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQ-DGGTLDSVLSWFGADTdRAWLGD 182
Cdd:COG1175   82 LLFTVVSvPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALLGALGLEP-INWLGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 183 PTSANTSLAGVSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIP 262
Cdd:COG1175  161 PSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLV 240

                        250       260       270
                 ....*....|....*....|....*....|...
gi 197721166 263 YIMTGGATG--TSTFVIQTVKLAFQFNKTGLAS 293
Cdd:COG1175  241 YVLTGGGPGnsTTTLVLYIYQTAFQQFDFGYAS 273
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 1-279 6.23e-34

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 126.36  E-value: 6.23e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166   1 MTETTKTAAARPPRPGTSWRRTgtasahgtpqrrgrtLRRITPWMFLAVP-LALLITFTYVP-VGNMI-YYSFTDWDGV- 76
Cdd:COG4209    1 MSTTAAKAKRKKKKRKKSFLKR---------------LKRDWQLYLMLLPgLIYLLIFSYLPmYGIVIaFKDYNPFKGIf 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  77 -SPdrnFTGVDNYSQIFTRPELFRVFF----VSFYYLAAS-AVQIVVALYFATVLSfdLRFRNLFKGILFFPYLINGVAI 150
Cdd:COG4209   66 gSP---WVGLKNFKFLFSSPDFWRVLRntllISLLKLVFGfPLPIILALLLNELRS--KRFKKTVQTISYLPHFLSWVVV 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 151 GFVFLYFF-QDGGTLDSVLSWFGADTdRAWLGDPTSANTSLAGVSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRW 229
Cdd:COG4209  141 AGIVYQFLsPDTGLVNQLLRALGGEP-INFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRW 219

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 197721166 230 QQFRHIIAPSIKPVLSLSIILAVSGSLSV-FEIPYIMTGGATGTSTFVIQT 279
Cdd:COG4209  220 QQIWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLYNPLNYSTSDVIDT 270
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 39-270 8.95e-26

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 103.69  E-value: 8.95e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  39 RRITPWMFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSPDRNFTGVDNYSQIFTRPELFRVFFVSFYY-LAASAVQIVV 117
Cdd:COG1176    7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIaLLTTLICLLL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 118 ALYFATVLSF-DLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSWFG-ADTDRAWLGDPtsanTSLAGVSV 195
Cdd:COG1176   87 GYPIAYFLARaPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGlIDEPLRLLYTE----FAVVIGLV 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197721166 196 WRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGGAT 270
Cdd:COG1176  163 YVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKV 237
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
36-287 1.11e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 95.23  E-value: 1.11e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  36 RTLRRITPWMFLAVPLALLITFTYVPVGNMIYYSFTDwdgvspdrnftGVDNYSQIFTRPELFRVFFVSFYYLAASAV-Q 114
Cdd:COG1178    2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTD-----------GLANFWALLSDPYLWRALGNTLLLALLVTLlS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 115 IVVALYFATVLS-FDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLswfgadtdRAWLGDPTSANTSLAG- 192
Cdd:COG1178   71 LLLGVPLAWLLArTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLL--------RALFGLEPPDIYGLGGi 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 193 --VSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGGAT 270
Cdd:COG1178  143 ilVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT 222

                        250
                 ....*....|....*..
gi 197721166 271 GTSTFVIQTVKLAFQFN 287
Cdd:COG1178  223 TLTTAIYQAWLGDFDLG 239
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 44-278 9.46e-17

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 78.61  E-value: 9.46e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  44 WMFLAVPLALLITFTYVPVGNMIYYSFTD-WDGVSPDRNFTgVDNYSQIFTRPELFRVFFVSFYY-LAASAVQIVVALYF 121
Cdd:COG1177    6 RLLLRLFLALVLLFLYLPILVLVLYSFNDsWFLTFPPEGFT-LRWYAELFSDPRLLDALLNSLLIaLLSTLLATVLGTPA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 122 ATVLS-FDLRFRNLFKGILFFPYLINGVAIGFVFLYFFqdgGTLDSVLSWFGAdtdrawlgdptsantsLAGVSVWrftG 200
Cdd:COG1177   85 ALALArYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF---SALGLSGGLWGL----------------ILAHVVF---T 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 201 LNFVLF--LGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGGatGTSTFVIQ 278
Cdd:COG1177  143 LPFVVLvvLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGP--GVTTLPVY 220
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 30-278 1.38e-16

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 78.21  E-value: 1.38e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  30 TPQRRGRTLRRITPWMFLAVpLALLITFtyvPVGNMIYYSFTDWDGVSPD------RNFTgVDNYSQIFTRPELFRVFFV 103
Cdd:COG0395    4 TARRRRRRLGRILLYLLLIL-LALLFLF---PLYWMVVTSFKPPAEIFSGppsllpSEFT-LENYRAAFTDGPFGRYLLN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 104 SFYY-LAASAVQIVVALYFATVLS-FDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSwfgadtdrAWLg 181
Cdd:COG0395   79 SLIVaVVSTVLSLLLSSLAAYALArFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWG--------LIL- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 182 dPTSANTSlaGVSVWrftglnfvLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEI 261
Cdd:COG0395  150 -PYLAFGL--PFGIF--------LLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLW 218

                        250
                 ....*....|....*..
gi 197721166 262 PYIMTggaTGTSTFVIQ 278
Cdd:COG0395  219 PLILL---TSPDLRTLP 232
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
45-243 1.47e-16

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 78.33  E-value: 1.47e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  45 MFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSPDRNFTGVDNYSQIFTRPELFRVFFVSFYYLAASAVQ-IVVALYFAT 123
Cdd:PRK10561   1 LLVAPQLIITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSgLLVSLFFAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 124 VLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDG-GTLDSVLSWFGADTDRAWLGDPTSANTSLAgvSVWRFTGLN 202
Cdd:PRK10561  81 LVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGrGLITHFLAEFGYDWNHAQNSGQAMFLVVFA--SVWKQISYN 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 197721166 203 FVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPV 243
Cdd:PRK10561 159 FLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPV 199
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
20-251 2.84e-12

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 67.11  E-value: 2.84e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  20 RRTGTASAHGTPQRRGRTLRRITPWMFLAVPLALLITFtyVPVGNMIYYSFTDWdgvsPDRNFTgVDNYSQIFTRPELFR 99
Cdd:COG1178  266 RRYATVGGRARRPRRVKLGRWRWLALALCLLLVLLGLL--LPLLALLLWSLTKA----LDDNLT-LDNYRFVLLDPSLLR 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 100 VFFVSFYYLAASAVqIVVALYFATVLS---FDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSWFgadtd 176
Cdd:COG1178  339 ALLNSLLLALLAAL-LAVLLALLLAYLvrrRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTLA----- 412

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 197721166 177 rawlgdptsantSLAGVSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILA 251
Cdd:COG1178  413 ------------ILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLV 475
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 46-259 1.21e-11

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 64.00  E-value: 1.21e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  46 FLAVPLALLITFTYVPVGNMIYYSFTdwdgvspdrnfTGVDNYSQIFTRPELFRVFFVSFYY-LAASAVQIVVALYFATV 124
Cdd:COG0555   12 TLGLTLLYLSLIVLLPLAALVLKAAG-----------LGWAEFWAVLTSPRVLAALKLSLGTaLIAALINLVFGLPLAWV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 125 LS-FDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSWFGADTdrawlgdptsANTSLAGVSVWRFTGLNF 203
Cdd:COG0555   81 LVrYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKV----------AFTPLGIVLAQTFVSLPF 150

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 197721166 204 VL--FLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVF 259
Cdd:COG0555  151 VVrtVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 108-272 1.79e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.30  E-value: 1.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 108 LAASAVQIVVALYFATVL-SFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTldsvlswfgadtdraWLGDPTSA 186
Cdd:cd06261    9 LIATLLALVLGLLLGIILaRKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG---------------WGILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 187 NTSLAGVSVWrFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMT 266
Cdd:cd06261   74 LPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152


                 ....*.
gi 197721166 267 GGATGT 272
Cdd:cd06261  153 GGEAPG 158
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 44-268 2.56e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 61.23  E-value: 2.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166   44 WMFLAVPLALLITFTYVPVGNMIYYSFTDWDGvspdrNFTGVDNYSQIFTRPELFRVFFVSFYyLAASAVQIVVALYFAT 123
Cdd:TIGR03262   4 RLLLAGMILALLLFLLLPLLALLTKSVYDSDG-----DFIGLANFAEYFATPGLLQSLGNSLT-VSAIVTAIVVPLAFAF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  124 VLSFD---LRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSvlsWFGADTDRAWLGdptsantSLAGVSVWRFTG 200
Cdd:TIGR03262  78 AYALTrsrIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKG---LLGGFSIYGFWG-------IVIGEVFYTFPH 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197721166  201 LnFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGG 268
Cdd:TIGR03262 148 A-LMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGD 214
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 114-277 2.39e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.77  E-value: 2.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  114 QIVVALYFATVLSFdlRFRNLFKGILFFPYLINGVAIGFVFLYFFqdggtldsvlswfgadtdraWLGDPTSANTSLAGV 193
Cdd:pfam00528   1 GIPLGIIAALRRGR--RLDRLLRPLIDLLQALPSFVLAILLVVIA--------------------ILSILGHGILPAIIL 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  194 SVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIMTGGATGTS 273
Cdd:pfam00528  59 ALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL 138


                  ....
gi 197721166  274 TFVI 277
Cdd:pfam00528 139 LLIE 142
malF PRK10999
maltose ABC transporter permease MalF;
59-248 3.46e-08

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 54.58  E-value: 3.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  59 YVPVGNMIYYSFTDWDG------VSPD-RNFTGVDNYSQIFTRPELFRVFFVSFYYLAASAVQIV-----VALYFATVLS 126
Cdd:PRK10999 234 YRPNNDIGFYQSINADGnwggekLSPGfTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVvltvaVGMVLACLVQ 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 127 FD-LRFRNLFKGILFFPYLINGVAIGFVFLYFF-QDGGTLDSVLS-WFGADTdrAWLGDPTSANTSLAGVSVWrftgLNF 203
Cdd:PRK10999 314 WEaLKGKAVYRVLLILPYAVPSFISILIFKGLFnQSFGEINMMLSaLFGIKP--AWFSDPTLAKTMILIVNTW----LGY 387

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 197721166 204 ----VLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPS-IKPVLSLSI 248
Cdd:PRK10999 388 pymmILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLlIKPLTPLMI 437
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 200-265 8.54e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 52.46  E-value: 8.54e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 197721166 200 GLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFEIPYIM 265
Cdd:COG3833  156 PFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVL 221
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 108-259 7.07e-07

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 49.16  E-value: 7.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  108 LAASAVQIVVALYF--ATVLSF-DLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSWFGADTDRAWLGdpt 184
Cdd:TIGR02141   6 VAVIATLLLLPLGIpvAWLLARsRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTFTG--- 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 197721166  185 sanTSLAGVSVwrftGLNFVL--FLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVF 259
Cdd:TIGR02141  83 ---AVLASVIV----SFPLMVqpIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEF 152
malG PRK10998
maltose ABC transporter permease MalG;
208-262 3.95e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 47.78  E-value: 3.95e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 197721166 208 GAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSvfEIP 262
Cdd:PRK10998 179 GYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAIT--EVP 231
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
88-259 1.02e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 46.29  E-value: 1.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  88 YSQIFTRPELFRVFFVSFyyLAASAVQIVVALyFATVLSFDL---RF--RNLFKGILFFPYLINGVAIGFVFlyffqdgG 162
Cdd:PRK10971  47 YWEVITNPQVVAAYKVTL--LSAFVASIFNAV-FGLLMAWILtryRFpgRTLLDALMDLPFALPTAVAGLTL-------A 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 163 TLDSVLSWFGAdtdraWLG--DPTSANTSLAGVSVWRFTGLNFVLflGAIQSIPGEL----YEAAQLDGASRWQQFRHII 236
Cdd:PRK10971 117 SLFSVNGWYGE-----WLAkfDIKVTYTWLGIAVAMAFTSIPFVV--RTVQPVLEELgpeyEEAAETLGATRWQSFRKVV 189

                        170       180
                 ....*....|....*....|...
gi 197721166 237 APSIKPVLSLSIILAVSGSLSVF 259
Cdd:PRK10971 190 LPELSPALLAGVALSFTRSLGEF 212
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 20-244 1.06e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 46.15  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  20 RRTGTASAHGTPQRRGRtlrRITPWMFLAVPLALLITFTYVPVGNMIYYSFTDWDGVSpdrnftgVDNYSQIFTRPELFR 99
Cdd:PRK15050   4 RVRASAAAHAAAARRRR---RLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGEHGLG-------LATYRAVLGSPDFRG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 100 VFFVSFYYLAASAVQ-IVVALYFATVLSFD--------LRFRNLFkgiLFFPYLIngVAIGFVFLYFFQdgGTLDSVLSW 170
Cdd:PRK15050  74 ALLTTLQIAFASTAGcLVLGVLLALVLAFVpfpgaslvGRFIDTF---VAFPSFL--ITLAFTFLYGSA--GSVNIALQR 146

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 197721166 171 FGADTDRawlgdPTSANTSLAGV---SVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVL 244
Cdd:PRK15050 147 LFGLEAP-----PLDFLYSPGGVilaEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPAL 218
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 33-268 2.97e-04

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 41.71  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166  33 RRGRTLRRITPWMFLaVPLALLIT-FTYVPVGNMIYYSFTDWDGvspdrNFTgVDNYSQIFTrPELFRVFFVSFYYLAAS 111
Cdd:COG4132    4 ASRRRRRKWLAWLGL-LPFFLFVLlFLLLPTVWVVIGAFQDDDG-----GFT-LANYAELTS-PFYLQAFWNSIWLSLAS 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 112 AV-QIVVALY--FATVLSFDLRFRNLFkgILFFPYLIN--GVAIGFVFLYFFQDGGTLDSVLSWFGADTdrawlgdptsa 186
Cdd:COG4132   76 ALiGAVIGLLlaYALRRGGPGWLRRAV--LAFSGVASNfaGVPLAFAFIATLGRNGLVTLLLKQLGIDL----------- 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 187 ntsLAGVSVWRFTGLNFV-----------LFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGS 255
Cdd:COG4132  143 ---YDGFNLYSFWGLILVylyfqiplmvlLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANA 219

                        250
                 ....*....|...
gi 197721166 256 LSVFEIPYIMTGG 268
Cdd:COG4132  220 FGAYATAYALTGG 232
cysT CHL00187
sulfate transport protein; Provisional
 210-259 7.29e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 40.38  E-value: 7.29e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 197721166 210 IQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVF 259
Cdd:CHL00187 160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 203-258 7.51e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.52  E-value: 7.51e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 197721166 203 FVLFLGAIQSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSV 258
Cdd:COG0600  141 LLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIG 196
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 205-239 1.91e-03

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 38.92  E-value: 1.91e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 197721166 205 LFLGAIQSIP-GELyEAAQLDGASRWQQFRHIIAPS 239
Cdd:COG4160  113 IFRGAIRAVPkGEI-EAARALGMSRWQTFRRIILPS 147
modB PRK09421
molybdate ABC transporter permease subunit;
108-283 4.79e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.98  E-value: 4.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 108 LAASAVQIVVALYFATVLS-FDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVL-SWFGADTDRAWLGdpts 185
Cdd:PRK09421  19 SVAVLFSLPFGILVAWLLArCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLyEWFGISFAFSWRG---- 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197721166 186 anTSLAGVSVwrftglNFVLFLGAI----QSIPGELYEAAQLDGASRWQQFRHIIAPSIKPVLSLSIILAVSGSLSVFei 261
Cdd:PRK09421  95 --AALAAAVM------AFPLMVRAIrlslEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF-- 164

                        170       180
                 ....*....|....*....|....*...
gi 197721166 262 pyimtgGAtgTSTFV------IQTVKLA 283
Cdd:PRK09421 165 ------GA--TITFVsnipgeTQTIPSA 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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